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Removing deprecation label from aliquots CPT0187540007 and CPT0209110009
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* These were previously marked as deprecated because of an inconsistncy in the sample type at GDC
  * inconsistency described here: shiso:/Users/mwyczalk/Projects/CPTAC3/CPTAC3.Cases/20200501.find_duplicates/README.md
  * this inconsistency has since been resolved
* Details shiso:/Users/mwyczalk/Projects/CPTAC3/CPTAC3.Cases/20210325.LUAD_GBM_Confirmatory_Cases/README.md
* This renaming is manual right now, but the Catalog should update automatically on next discovery run
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mwyczalkowski committed Mar 30, 2021
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Showing 4 changed files with 15 additions and 17 deletions.
2 changes: 1 addition & 1 deletion BamMap/MGI.BamMap.dat
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Expand Up @@ -3277,7 +3277,7 @@ C3N-02289.WXS.T.hg38 C3N-02289 LSCC WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GD
C3N-02290.WXS.A.hg38 C3N-02290 LUAD WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/cc87aa40-2e4d-49b1-b6e5-22e222a3542c/871b29fb-3af5-4a09-abc0-f11504688d46_wxs_gdc_realn.bam 40756044421 BAM hg38 cc87aa40-2e4d-49b1-b6e5-22e222a3542c MGI
C3N-02290.WXS.N.hg38 C3N-02290 LUAD WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/dca076f4-1d01-45a0-b937-193cefeb4201/73ca30a6-3d6a-4c8b-96e5-991564146108_wxs_gdc_realn.bam 24224851770 BAM hg38 dca076f4-1d01-45a0-b937-193cefeb4201 MGI
C3N-02290.WXS.T.hg38 C3N-02290 LUAD WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/0b47cc59-7d97-433a-bfcd-67d71fd01d44/801d75b8-016b-4a06-9af7-6f00a9449d66_wxs_gdc_realn.bam 36846225684 BAM hg38 0b47cc59-7d97-433a-bfcd-67d71fd01d44 MGI
C3N-02295.WXS.A.hg38.deprecated C3N-02295 PDA WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/551a8d31-c8ba-43b3-8bad-a3ff4985bed5/d6caa3dd-afef-4946-af54-64a3357970bc_wxs_gdc_realn.bam 23536797529 BAM hg38 551a8d31-c8ba-43b3-8bad-a3ff4985bed5 MGI
C3N-02295.WXS.A.hg38 C3N-02295 PDA WXS tissue_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/551a8d31-c8ba-43b3-8bad-a3ff4985bed5/d6caa3dd-afef-4946-af54-64a3357970bc_wxs_gdc_realn.bam 23536797529 BAM hg38 551a8d31-c8ba-43b3-8bad-a3ff4985bed5 MGI
C3N-02295.WXS.N.hg38 C3N-02295 PDA WXS blood_normal /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/88e500c6-e2ce-4bc8-b6c6-aaffd157039d/2b52e0f0-76f7-450b-9111-2b3620ff77ae_wxs_gdc_realn.bam 33816832444 BAM hg38 88e500c6-e2ce-4bc8-b6c6-aaffd157039d MGI
C3N-02295.WXS.T.hg38.high_cov C3N-02295 PDA WXS tumor /gscmnt/gc2741/ding/CPTAC3-data/GDC_import/data/3acb49c1-b8a6-4c0e-8c98-d99c7e140617/7ce7f381-6602-4f47-86ab-125107c222cf_wxs_gdc_realn.bam 72687130302 BAM hg38 3acb49c1-b8a6-4c0e-8c98-d99c7e140617 MGI
C3N-02296.WXS.N.hg38 C3N-02296 UCEC WXS blood_normal /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/GDC_import/data/0dbdc7cc-21ca-4aa0-af91-419701c32f6a/38b1683f-1ef5-4461-9b87-8d56ab949bb5_wxs_gdc_realn.bam 40336658237 BAM hg38 0dbdc7cc-21ca-4aa0-af91-419701c32f6a MGI
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6 changes: 3 additions & 3 deletions BamMap/katmai.BamMap.dat
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Expand Up @@ -10727,9 +10727,9 @@ C3N-02290.RNA-Seq.R1.A C3N-02290 LUAD RNA-Seq tissue_normal /diskmnt/Projects/cp
C3N-02290.RNA-Seq.R1.T C3N-02290 LUAD RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/39d8f0b5-a3db-4a6b-b645-60b28ecdc6b9/190131_UNC32-K00270_0142_BH3LFYBBXY_ATCACG_S23_L007_R1_001.fastq.gz 4690579368 FASTQ NA 39d8f0b5-a3db-4a6b-b645-60b28ecdc6b9 katmai
C3N-02290.RNA-Seq.R2.A C3N-02290 LUAD RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/1a160126-dc86-454c-836f-0a8062bb21ea/190201_UNC31-K00269_0190_BH3LFKBBXY_CCGTCC_S16_L005_R2_001.fastq.gz 4678562004 FASTQ NA 1a160126-dc86-454c-836f-0a8062bb21ea katmai
C3N-02290.RNA-Seq.R2.T C3N-02290 LUAD RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ac88605a-47e9-408e-aca0-7ee694936066/190131_UNC32-K00270_0142_BH3LFYBBXY_ATCACG_S23_L007_R2_001.fastq.gz 4522792261 FASTQ NA ac88605a-47e9-408e-aca0-7ee694936066 katmai
C3N-02295.MethArray.Green.A.deprecated C3N-02295 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac/GDC_import/data/9d883bda-a03a-4515-9e30-38e4d7a6e8a7/203561450030_R07C01_Grn.idat 13676216 IDAT NA 9d883bda-a03a-4515-9e30-38e4d7a6e8a7 katmai
C3N-02295.MethArray.Green.A C3N-02295 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac/GDC_import/data/9d883bda-a03a-4515-9e30-38e4d7a6e8a7/203561450030_R07C01_Grn.idat 13676216 IDAT NA 9d883bda-a03a-4515-9e30-38e4d7a6e8a7 katmai
C3N-02295.MethArray.Green.T C3N-02295 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8d47a5db-d0a9-483c-a874-c90ac92c7c57/203561450084_R01C01_Grn.idat 13676210 IDAT NA 8d47a5db-d0a9-483c-a874-c90ac92c7c57 katmai
C3N-02295.MethArray.Red.A.deprecated C3N-02295 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac/GDC_import/data/0678b837-4f14-42e0-807b-a3097d30ea02/203561450030_R07C01_Red.idat 13676216 IDAT NA 0678b837-4f14-42e0-807b-a3097d30ea02 katmai
C3N-02295.MethArray.Red.A C3N-02295 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac/GDC_import/data/0678b837-4f14-42e0-807b-a3097d30ea02/203561450030_R07C01_Red.idat 13676216 IDAT NA 0678b837-4f14-42e0-807b-a3097d30ea02 katmai
C3N-02295.MethArray.Red.T C3N-02295 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/00db9834-8045-4784-b63d-719f94ac349b/203561450084_R01C01_Red.idat 13676210 IDAT NA 00db9834-8045-4784-b63d-719f94ac349b katmai
C3N-02295.miRNA-Seq.T C3N-02295 PDA miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b3e360a6-1aef-455d-9f51-ac8bcafbd0b1/190712_UNC32-K00270_0192_BH7HL3BBXY_TCGGCA_S48_L006_R1_001.unaln.bam 250372141 BAM NA b3e360a6-1aef-455d-9f51-ac8bcafbd0b1 katmai
C3N-02295.RNA-Seq.genomic.T.hg38 C3N-02295 PDA RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/6401b7b9-8871-42bb-ba8b-2bec0a89e359/a1e91af2-8b5d-4fb7-9519-1b17ed5b7d5f.rna_seq.genomic.gdc_realn.bam 9068778845 BAM hg38 6401b7b9-8871-42bb-ba8b-2bec0a89e359 katmai
Expand Down Expand Up @@ -12084,7 +12084,7 @@ C3N-03073.MethArray.Green.T C3N-03073 LUAD Methylation Array tumor /diskmnt/Proj
C3N-03073.MethArray.Red.A C3N-03073 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/45625f02-0c51-424b-aadf-7a35681153a0/203561450046_R02C01_Red.idat 13676211 IDAT NA 45625f02-0c51-424b-aadf-7a35681153a0 katmai
C3N-03073.MethArray.Red.T C3N-03073 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4fce9541-5697-4617-804d-7ab4b65e093a/203561450114_R04C01_Red.idat 13676226 IDAT NA 4fce9541-5697-4617-804d-7ab4b65e093a katmai
C3N-03073.miRNA-Seq.T C3N-03073 LUAD miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/18b12ad5-0a48-44b0-968f-591fb185fdd2/190722_UNC31-K00269_0234_AH7VGTBBXY_GATCAG_S5_L007_R1_001.unaln.bam 170217266 BAM NA 18b12ad5-0a48-44b0-968f-591fb185fdd2 katmai
C3N-03073.RNA-Seq.genomic.A.hg38.deprecated C3N-03073 LUAD RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/502ecb1d-0704-4c7c-8a43-745d6edde462/a4a5b2bf-bcaf-4a01-8c10-afda08bd5833.rna_seq.genomic.gdc_realn.bam 9932261725 BAM hg38 502ecb1d-0704-4c7c-8a43-745d6edde462 katmai
C3N-03073.RNA-Seq.genomic.A.hg38 C3N-03073 LUAD RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/502ecb1d-0704-4c7c-8a43-745d6edde462/a4a5b2bf-bcaf-4a01-8c10-afda08bd5833.rna_seq.genomic.gdc_realn.bam 9932261725 BAM hg38 502ecb1d-0704-4c7c-8a43-745d6edde462 katmai
C3N-03073.RNA-Seq.genomic.T.hg38 C3N-03073 LUAD RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/807a8856-820f-49c3-b544-c4e93ec0aca4/6b33c662-14e5-4798-a1a3-3e0b35c2a67a.rna_seq.genomic.gdc_realn.bam 11466419583 BAM hg38 807a8856-820f-49c3-b544-c4e93ec0aca4 katmai
C3N-03073.RNA-Seq.R1.T C3N-03073 LUAD RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/9d4ad6ac-66af-4216-8aa2-40531e6b3c32/190612_UNC31-K00269_0223_BH77CWBBXY_TGCGGCGT-CCTCGGTA_S7_L002_R1_001.fastq.gz 4110997799 FASTQ NA 9d4ad6ac-66af-4216-8aa2-40531e6b3c32 katmai
C3N-03073.RNA-Seq.R2.T C3N-03073 LUAD RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/7a4ecbb4-b7db-4bef-8933-bcee1d84a4d0/190612_UNC31-K00269_0223_BH77CWBBXY_TGCGGCGT-CCTCGGTA_S7_L002_R2_001.fastq.gz 4794736220 FASTQ NA 7a4ecbb4-b7db-4bef-8933-bcee1d84a4d0 katmai
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22 changes: 11 additions & 11 deletions CPTAC3.Catalog.dat
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Expand Up @@ -27325,9 +27325,9 @@ C3N-02290.WXS.N C3N-02290 LUAD WXS blood_normal CPT0187070002 CPT0187070002.Whol
C3N-02290.WXS.N.hg38 C3N-02290 LUAD WXS blood_normal CPT0187070002 73ca30a6-3d6a-4c8b-96e5-991564146108_wxs_gdc_realn.bam 24224851770 BAM NA dca076f4-1d01-45a0-b937-193cefeb4201 b7b13160551c01df000e2d6a046079d0 hg38 Blood Derived Normal C3N-02290-31
C3N-02290.WXS.T C3N-02290 LUAD WXS tumor CPT0187010006 CPT0187010006.WholeExome.RP-1303.bam 26472199775 BAM NA 8f34a887-9b82-46d4-9d3e-6526f8c8ea26 74641a0f06c781ae203232c55f7e4f54 hg19 Primary Tumor C3N-02290-01
C3N-02290.WXS.T.hg38 C3N-02290 LUAD WXS tumor CPT0187010006 801d75b8-016b-4a06-9af7-6f00a9449d66_wxs_gdc_realn.bam 36846225684 BAM NA 0b47cc59-7d97-433a-bfcd-67d71fd01d44 18ec090aa764602c7b330a2824cb12ef hg38 Primary Tumor C3N-02290-01
C3N-02295.MethArray.Green.A.deprecated C3N-02295 PDA Methylation Array tissue_normal CPT0187540007 203561450030_R07C01_Grn.idat 13676216 IDAT Green 9d883bda-a03a-4515-9e30-38e4d7a6e8a7 105d922c73e3bbb074b0d74962d5f308 NA Solid Tissue Normal C3N-02295-01 .deprecated
C3N-02295.MethArray.Green.A C3N-02295 PDA Methylation Array tissue_normal CPT0187540007 203561450030_R07C01_Grn.idat 13676216 IDAT Green 9d883bda-a03a-4515-9e30-38e4d7a6e8a7 105d922c73e3bbb074b0d74962d5f308 NA Solid Tissue Normal C3N-02295-01
C3N-02295.MethArray.Green.T C3N-02295 PDA Methylation Array tumor CPT0187550007 203561450084_R01C01_Grn.idat 13676210 IDAT Green 8d47a5db-d0a9-483c-a874-c90ac92c7c57 849cdba00af34836e48d135e7a1e06d0 NA Primary Tumor C3N-02295-04
C3N-02295.MethArray.Red.A.deprecated C3N-02295 PDA Methylation Array tissue_normal CPT0187540007 203561450030_R07C01_Red.idat 13676216 IDAT Red 0678b837-4f14-42e0-807b-a3097d30ea02 0df7673101881e91113e8434b51602d9 NA Solid Tissue Normal C3N-02295-01 .deprecated
C3N-02295.MethArray.Red.A C3N-02295 PDA Methylation Array tissue_normal CPT0187540007 203561450030_R07C01_Red.idat 13676216 IDAT Red 0678b837-4f14-42e0-807b-a3097d30ea02 0df7673101881e91113e8434b51602d9 NA Solid Tissue Normal C3N-02295-01
C3N-02295.MethArray.Red.T C3N-02295 PDA Methylation Array tumor CPT0187550007 203561450084_R01C01_Red.idat 13676210 IDAT Red 00db9834-8045-4784-b63d-719f94ac349b 56fe3e0945c9408b7f2c6bd192a0dfe7 NA Primary Tumor C3N-02295-04
C3N-02295.miRNA-Seq.T C3N-02295 PDA miRNA-Seq tumor CPT0187550010 190712_UNC32-K00270_0192_BH7HL3BBXY_TCGGCA_S48_L006_R1_001.unaln.bam 250372141 BAM NA b3e360a6-1aef-455d-9f51-ac8bcafbd0b1 0829c1552006ba77c78703a90c352038 NA Primary Tumor C3N-02295-04
C3N-02295.miRNA-Seq.T.hg38 C3N-02295 PDA miRNA-Seq tumor CPT0187550010 7888ceea-bbbc-42f7-8272-fc00d123fe3b_mirnaseq_gdc_realn.bam 286565023 BAM NA 567d9a17-9cb7-4221-9ca8-164533ddb228 f3795d2ccc8690647b97c6b5792d6a8a hg38 Primary Tumor C3N-02295-04
Expand All @@ -27340,8 +27340,8 @@ C3N-02295.WGS.N C3N-02295 PDA WGS blood_normal CPT0187580002 CPT0187580002.Whole
C3N-02295.WGS.N.hg38 C3N-02295 PDA WGS blood_normal CPT0187580002 2b52e0f0-76f7-450b-9111-2b3620ff77ae_wgs_gdc_realn.bam 117148874345 BAM NA 254ba69b-cf57-4383-b912-f0eb2e55ed7e fb24613a6ffbee46dec51ca2dd06ba88 hg38 Blood Derived Normal C3N-02295-31
C3N-02295.WGS.T C3N-02295 PDA WGS tumor CPT0187550007 CPT0187550007.WholeGenome.RP-1303.bam 128946497623 BAM NA b9568d93-4fa2-4d67-bc32-ad2eddacbe41 2e473ce10ab445853c43b135b665122b hg19 Primary Tumor C3N-02295-04
C3N-02295.WGS.T.hg38 C3N-02295 PDA WGS tumor CPT0187550007 7ce7f381-6602-4f47-86ab-125107c222cf_wgs_gdc_realn.bam 188853194552 BAM NA 4ca8965e-f646-4db7-8cec-3532197119f0 decaf719e5c7f248faf697b7dea7e0f2 hg38 Primary Tumor C3N-02295-04
C3N-02295.WXS.A.deprecated C3N-02295 PDA WXS tissue_normal CPT0187540007 CPT0187540007.WholeExome.RP-1303.bam 17239033208 BAM NA 715067e4-ba81-445f-9b02-07635a68eee6 573f01c77de65e8bf4d515ca64ce41dc hg19 Solid Tissue Normal C3N-02295-01 .deprecated
C3N-02295.WXS.A.hg38.deprecated C3N-02295 PDA WXS tissue_normal CPT0187540007 d6caa3dd-afef-4946-af54-64a3357970bc_wxs_gdc_realn.bam 23536797529 BAM NA 551a8d31-c8ba-43b3-8bad-a3ff4985bed5 726a7e4ac80cf86cc4b2d8a38ffcd8f2 hg38 Solid Tissue Normal C3N-02295-01 .deprecated
C3N-02295.WXS.A C3N-02295 PDA WXS tissue_normal CPT0187540007 CPT0187540007.WholeExome.RP-1303.bam 17239033208 BAM NA 715067e4-ba81-445f-9b02-07635a68eee6 573f01c77de65e8bf4d515ca64ce41dc hg19 Solid Tissue Normal C3N-02295-01
C3N-02295.WXS.A.hg38 C3N-02295 PDA WXS tissue_normal CPT0187540007 d6caa3dd-afef-4946-af54-64a3357970bc_wxs_gdc_realn.bam 23536797529 BAM NA 551a8d31-c8ba-43b3-8bad-a3ff4985bed5 726a7e4ac80cf86cc4b2d8a38ffcd8f2 hg38 Solid Tissue Normal C3N-02295-01
C3N-02295.WXS.N C3N-02295 PDA WXS blood_normal CPT0187580002 CPT0187580002.WholeExome.RP-1303.bam 24401623459 BAM NA 9e113af0-669f-4a26-8315-a6b0faeed530 61590f17420f83003b77fc5123ec9291 hg19 Blood Derived Normal C3N-02295-31
C3N-02295.WXS.N.hg38 C3N-02295 PDA WXS blood_normal CPT0187580002 2b52e0f0-76f7-450b-9111-2b3620ff77ae_wxs_gdc_realn.bam 33816832444 BAM NA 88e500c6-e2ce-4bc8-b6c6-aaffd157039d 2d9c3a3e7bb81c45e4d657665a43482c hg38 Blood Derived Normal C3N-02295-31
C3N-02295.WXS.T.hg38.high_cov C3N-02295 PDA WXS tumor CPT0187550007 7ce7f381-6602-4f47-86ab-125107c222cf_wxs_gdc_realn.bam 72687130302 BAM NA 3acb49c1-b8a6-4c0e-8c98-d99c7e140617 13443292e4adc598b12fe1c4c16037ce hg38 Primary Tumor C3N-02295-04 .high_cov
Expand Down Expand Up @@ -30894,19 +30894,19 @@ C3N-03073.MethArray.Green.A C3N-03073 LUAD Methylation Array tissue_normal CPT02
C3N-03073.MethArray.Green.T C3N-03073 LUAD Methylation Array tumor CPT0209100006 203561450114_R04C01_Grn.idat 13676226 IDAT Green b43577c3-739c-41a7-8a1a-8db170a2c594 3362f9609ace12df4c31b3e529520ebe NA Primary Tumor C3N-03073-02
C3N-03073.MethArray.Red.A C3N-03073 LUAD Methylation Array tissue_normal CPT0209110006 203561450046_R02C01_Red.idat 13676211 IDAT Red 45625f02-0c51-424b-aadf-7a35681153a0 436ee6213aa280c2d50c423244963d24 NA Solid Tissue Normal C3N-03073-03
C3N-03073.MethArray.Red.T C3N-03073 LUAD Methylation Array tumor CPT0209100006 203561450114_R04C01_Red.idat 13676226 IDAT Red 4fce9541-5697-4617-804d-7ab4b65e093a f9ed602ff3191ae44497f918b12d0ec6 NA Primary Tumor C3N-03073-02
C3N-03073.miRNA-Seq.A.deprecated C3N-03073 LUAD miRNA-Seq tissue_normal CPT0209110009 190722_UNC31-K00269_0234_AH7VGTBBXY_CACCGG_S46_L006_R1_001.unaln.bam 202343629 BAM NA 01557f5c-1498-49a7-8ca0-5dcad0b64f33 13574c90c1617978e20b24d09a845807 NA Solid Tissue Normal C3N-03073-03 .deprecated
C3N-03073.miRNA-Seq.A.hg38.deprecated C3N-03073 LUAD miRNA-Seq tissue_normal CPT0209110009 ffbdabd5-324e-4056-a7f3-6431d450f9b9_mirnaseq_gdc_realn.bam 228036783 BAM NA 9ae2eda7-27ae-424f-bf0d-5eab2a473b1c 8ce946d9729702a60b0f94e54fe85112 hg38 Solid Tissue Normal C3N-03073-03 .deprecated
C3N-03073.miRNA-Seq.A C3N-03073 LUAD miRNA-Seq tissue_normal CPT0209110009 190722_UNC31-K00269_0234_AH7VGTBBXY_CACCGG_S46_L006_R1_001.unaln.bam 202343629 BAM NA 01557f5c-1498-49a7-8ca0-5dcad0b64f33 13574c90c1617978e20b24d09a845807 NA Solid Tissue Normal C3N-03073-03
C3N-03073.miRNA-Seq.A.hg38 C3N-03073 LUAD miRNA-Seq tissue_normal CPT0209110009 ffbdabd5-324e-4056-a7f3-6431d450f9b9_mirnaseq_gdc_realn.bam 228036783 BAM NA 9ae2eda7-27ae-424f-bf0d-5eab2a473b1c 8ce946d9729702a60b0f94e54fe85112 hg38 Solid Tissue Normal C3N-03073-03
C3N-03073.miRNA-Seq.T C3N-03073 LUAD miRNA-Seq tumor CPT0209100009 190722_UNC31-K00269_0234_AH7VGTBBXY_GATCAG_S5_L007_R1_001.unaln.bam 170217266 BAM NA 18b12ad5-0a48-44b0-968f-591fb185fdd2 8b1a42d611e97eda7ebc1f6a62ac43ed NA Primary Tumor C3N-03073-02
C3N-03073.miRNA-Seq.T.hg38 C3N-03073 LUAD miRNA-Seq tumor CPT0209100009 e34f41ee-9783-4baf-8d2d-fc7805d96c18_mirnaseq_gdc_realn.bam 188336343 BAM NA 738af13e-57ad-4e5c-b246-ab70bdabd56d 5660f0d2176d918c04d894de78f028c0 hg38 Primary Tumor C3N-03073-02
C3N-03073.RNA-Seq.chimeric.A.hg38.deprecated C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 a4a5b2bf-bcaf-4a01-8c10-afda08bd5833.rna_seq.chimeric.gdc_realn.bam 27902519 BAM chimeric f2909109-8da9-46e8-a5f2-abadacd79050 5b3a80b9adca9956027b53b5d7722e0b hg38 Solid Tissue Normal C3N-03073-03 .deprecated
C3N-03073.RNA-Seq.chimeric.A.hg38 C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 a4a5b2bf-bcaf-4a01-8c10-afda08bd5833.rna_seq.chimeric.gdc_realn.bam 27902519 BAM chimeric f2909109-8da9-46e8-a5f2-abadacd79050 5b3a80b9adca9956027b53b5d7722e0b hg38 Solid Tissue Normal C3N-03073-03
C3N-03073.RNA-Seq.chimeric.T.hg38 C3N-03073 LUAD RNA-Seq tumor CPT0209100009 6b33c662-14e5-4798-a1a3-3e0b35c2a67a.rna_seq.chimeric.gdc_realn.bam 33240074 BAM chimeric 6fc3067a-004b-4e8d-a635-7d6497202a4f 3652c36e1d412c01a10e3146e1e4470f hg38 Primary Tumor C3N-03073-02
C3N-03073.RNA-Seq.genomic.A.hg38.deprecated C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 a4a5b2bf-bcaf-4a01-8c10-afda08bd5833.rna_seq.genomic.gdc_realn.bam 9932261725 BAM genomic 502ecb1d-0704-4c7c-8a43-745d6edde462 2e7a565793375f4fa3ba51a19df139a8 hg38 Solid Tissue Normal C3N-03073-03 .deprecated
C3N-03073.RNA-Seq.genomic.A.hg38 C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 a4a5b2bf-bcaf-4a01-8c10-afda08bd5833.rna_seq.genomic.gdc_realn.bam 9932261725 BAM genomic 502ecb1d-0704-4c7c-8a43-745d6edde462 2e7a565793375f4fa3ba51a19df139a8 hg38 Solid Tissue Normal C3N-03073-03
C3N-03073.RNA-Seq.genomic.T.hg38 C3N-03073 LUAD RNA-Seq tumor CPT0209100009 6b33c662-14e5-4798-a1a3-3e0b35c2a67a.rna_seq.genomic.gdc_realn.bam 11466419583 BAM genomic 807a8856-820f-49c3-b544-c4e93ec0aca4 860aba33cdf05f915474aa94470c6508 hg38 Primary Tumor C3N-03073-02
C3N-03073.RNA-Seq.R1.A.deprecated C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 190607_UNC32-K00270_0178_AH773TBBXY_CATAGAGT-TGCCACCA_S20_L005_R1_001.fastq.gz 3911246975 FASTQ NA b203accd-ac6f-4096-8b45-578c7365a462 d170a586b02bbee5b6f5024e1fa0f099 NA Solid Tissue Normal C3N-03073-03 .deprecated
C3N-03073.RNA-Seq.R1.A C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 190607_UNC32-K00270_0178_AH773TBBXY_CATAGAGT-TGCCACCA_S20_L005_R1_001.fastq.gz 3911246975 FASTQ NA b203accd-ac6f-4096-8b45-578c7365a462 d170a586b02bbee5b6f5024e1fa0f099 NA Solid Tissue Normal C3N-03073-03
C3N-03073.RNA-Seq.R1.T C3N-03073 LUAD RNA-Seq tumor CPT0209100009 190612_UNC31-K00269_0223_BH77CWBBXY_TGCGGCGT-CCTCGGTA_S7_L002_R1_001.fastq.gz 4110997799 FASTQ NA 9d4ad6ac-66af-4216-8aa2-40531e6b3c32 014ad50c2ad11b2e7c2efc343a053957 NA Primary Tumor C3N-03073-02
C3N-03073.RNA-Seq.R2.A.deprecated C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 190607_UNC32-K00270_0178_AH773TBBXY_CATAGAGT-TGCCACCA_S20_L005_R2_001.fastq.gz 4309621063 FASTQ NA 9af1321e-4672-466f-b1b3-8365ead84c06 67ca931174ca001eb9035638ef01e72f NA Solid Tissue Normal C3N-03073-03 .deprecated
C3N-03073.RNA-Seq.R2.A C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 190607_UNC32-K00270_0178_AH773TBBXY_CATAGAGT-TGCCACCA_S20_L005_R2_001.fastq.gz 4309621063 FASTQ NA 9af1321e-4672-466f-b1b3-8365ead84c06 67ca931174ca001eb9035638ef01e72f NA Solid Tissue Normal C3N-03073-03
C3N-03073.RNA-Seq.R2.T C3N-03073 LUAD RNA-Seq tumor CPT0209100009 190612_UNC31-K00269_0223_BH77CWBBXY_TGCGGCGT-CCTCGGTA_S7_L002_R2_001.fastq.gz 4794736220 FASTQ NA 7a4ecbb4-b7db-4bef-8933-bcee1d84a4d0 c710d856664107b9375d7de6cfc793f5 NA Primary Tumor C3N-03073-02
C3N-03073.RNA-Seq.transcriptome.A.hg38.deprecated C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 a4a5b2bf-bcaf-4a01-8c10-afda08bd5833.rna_seq.transcriptome.gdc_realn.bam 7839735437 BAM transcriptome c7e11f29-b5be-4b4d-a310-214ffdbc10bb 946909c7d79754b7154dc570a5a04bb1 hg38 Solid Tissue Normal C3N-03073-03 .deprecated
C3N-03073.RNA-Seq.transcriptome.A.hg38 C3N-03073 LUAD RNA-Seq tissue_normal CPT0209110009 a4a5b2bf-bcaf-4a01-8c10-afda08bd5833.rna_seq.transcriptome.gdc_realn.bam 7839735437 BAM transcriptome c7e11f29-b5be-4b4d-a310-214ffdbc10bb 946909c7d79754b7154dc570a5a04bb1 hg38 Solid Tissue Normal C3N-03073-03
C3N-03073.RNA-Seq.transcriptome.T.hg38 C3N-03073 LUAD RNA-Seq tumor CPT0209100009 6b33c662-14e5-4798-a1a3-3e0b35c2a67a.rna_seq.transcriptome.gdc_realn.bam 8071449783 BAM transcriptome 808b91fa-48fc-4893-84bc-a45350ec1a85 9b6f48cce55b11e29d3acb625049841a hg38 Primary Tumor C3N-03073-02
C3N-03073.WGS.N C3N-03073 LUAD WGS blood_normal CPT0209150002 CPT0209150002.WholeGenome.RP-1303.bam 75684433012 BAM NA fcc128a4-b9ac-4ac5-80b9-9189c034e456 0d90f2da059479499497f4d4a52eab77 hg19 Blood Derived Normal C3N-03073-31
C3N-03073.WGS.N.hg38 C3N-03073 LUAD WGS blood_normal CPT0209150002 d640799e-ed19-4c36-bb6c-7642f28e080a_wgs_gdc_realn.bam 109719914284 BAM NA da91d771-6aa6-477a-8ebf-0e8922f3955b 3befd9b660d625308b62ae041be39d05 hg38 Blood Derived Normal C3N-03073-31
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