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Adding RNA-Seq Transcript results for GBM
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@mwyczalkowski
mwyczalkowski committed Sep 20, 2022
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10 changes: 10 additions & 0 deletions DCC_Analysis_Summary/RNA-Seq_Transcript.DCC_analysis_summary.dat
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Expand Up @@ -1131,6 +1131,7 @@ C3L-05423 LSCC RNA-Seq_Transcript v1.2 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_
C3L-05427 LSCC RNA-Seq_Transcript v1.2 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_RNA-Seq_Transcript_v1.2_batch_821_20210916/C3L-05427.tissue_normal.transcripts.gtf.gz 20940302 gtf bc744c4d6985ff0c4e89b281e305e637 tissue_normal C3L-05427.RNA-Seq.R1.A 482b9386-177c-4b58-911b-71dcf0bc091e C3L-05427.RNA-Seq.R2.A 05e7e5ac-bda1-4b39-9be2-13a7ed728760
C3L-05427 LSCC RNA-Seq_Transcript v1.2 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_RNA-Seq_Transcript_v1.2_batch_821_20210916/C3L-05427.tumor.transcripts.gtf.gz 21252101 gtf 131e46a4fa24f8965a3de1e3c136b365 tumor C3L-05427.RNA-Seq.R1.T 1e71dff6-a4f6-4b2f-997b-97333d743138 C3L-05427.RNA-Seq.R2.T 0985bf86-4c08-4c25-b649-faf95cb52e85
C3L-05428 LSCC RNA-Seq_Transcript v1.2 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_RNA-Seq_Transcript_v1.2_batch_821_20210916/C3L-05428.tumor.transcripts.gtf.gz 20764620 gtf 0a849d15238066c3f7a9927af1b58f02 tumor C3L-05428.RNA-Seq.R1.T 5fabb5b3-0d33-4be8-92c3-d3239d33d978 C3L-05428.RNA-Seq.R2.T e5c5af32-42c1-4e4f-97f3-4bda6ed36973
C3L-05481 GBM RNA-Seq_Transcript v1.5 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_RNA-Seq_Transcript_v1.5_RNA-Seq_Transcript.batch_822_20220920/C3L-05481.T.transcripts.gtf.gz 22016536 gtf 23f92d312d0b39e220ddf4927d23b1d9 tumor C3L-05481.REP_c39601d.RNA-Seq.S22_L008_R1.T 3943d597-a775-439b-a983-db12f9b0ec2d C3L-05481.REP_c39601d.RNA-Seq.S22_L008_R1.T 3943d597-a775-439b-a983-db12f9b0ec2d
C3L-05571 UCEC RNA-Seq_Transcript v1.2 20210310 Y3 /CPTAC3.Y3_WashU/UCEC/CPTAC3_UCEC_RNA-Seq_Transcript_v1.2_UCEC_3_20210310/C3L-05571.transcripts.gtf.gz 19576964 gtf 70954f3c3af7a9aade403fc4b4118971 tumor C3L-05571.RNA-Seq.R1.T 81f527a8-8a38-474b-a8e7-fd70b107bfc4 C3L-05571.RNA-Seq.R2.T 9ee12b8b-d9df-4948-80c5-cc88369fd22f
C3L-05678 AML RNA-Seq_Transcript v1.2 20220419 Y3 /CPTAC3.Y3_WashU/AML/CPTAC3_AML_RNA-Seq_Transcript_v1.2_AML_Transcript_20220419/C3L-05678.gtf.transcripts.gtf.gz 17242661 gtf be72a2931cf19fad2449ab3a2d4c7384 tumor_peripheral_blood C3L-05678.RNA-Seq.R1.Tpb 45e5054f-8448-4886-81a1-e3f10f0e9655 C3L-05678.RNA-Seq.R2.Tpb bb536e99-1c65-411e-8e81-25175f6e5b5e
C3L-05693 LSCC RNA-Seq_Transcript v1.2 20210916 Y3 /CPTAC3.Y3_WashU/LSCC/CPTAC3_LSCC_RNA-Seq_Transcript_v1.2_batch_821_20210916/C3L-05693.tissue_normal.transcripts.gtf.gz 20107498 gtf 09c73ba987e0669b886622d7b8aca645 tissue_normal C3L-05693.RNA-Seq.R1.A 41d75bd4-c284-404f-9997-d77ab8824fde C3L-05693.RNA-Seq.R2.A 7e52534b-ef33-46e8-938e-4141a128b64d
Expand Down Expand Up @@ -2537,4 +2538,13 @@ C761370 GBM RNA-Seq_Transcript v1.4 20211028 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_
C827913 GBM RNA-Seq_Transcript v1.4 20211028 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_RNA-Seq_Transcript_v1.4_batch_1021_20211028/C827913.recurrent_tumor2.transcripts.gtf.gz 21958454 gtf e57f9e87a66d22028fa75626a446f65f recurrent_tumor2 C827913.RNA-Seq.R1.R 7d9d1934-c881-4f7f-868e-7ff2720591ce C827913.RNA-Seq.R2.R 81cfe120-ec7e-48d7-8468-c407c8fef01e
C846363 GBM RNA-Seq_Transcript v1.4 20211028 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_RNA-Seq_Transcript_v1.4_batch_1021_20211028/C846363.recurrent_tumor.transcripts.gtf.gz 20679488 gtf 443b35a0a1cd31f9c96b42096a260a67 recurrent_tumor C846363.RNA-Seq.R1.R ed500025-1eaf-4dde-8174-8803c579bb73 C846363.RNA-Seq.R2.R f3c87ab0-01ca-4b90-8c82-bd999d775e65
C846363 GBM RNA-Seq_Transcript v1.4 20211028 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_RNA-Seq_Transcript_v1.4_batch_1021_20211028/C846363.tumor.transcripts.gtf.gz 18193484 gtf 02a08e3fb62bd04f80cee763d53bcdc7 tumor C846363.RNA-Seq.R1.T 05606bfc-9000-4aa7-a4d1-694fc9ad6410 C846363.RNA-Seq.R2.T 347ecdcb-c3a6-4292-9e5c-cf7f6e0c58ca
GTEX-NPJ7-0011-R10A-SM-HAKXW GBM RNA-Seq_Transcript v1.5 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_RNA-Seq_Transcript_v1.5_RNA-Seq_Transcript.batch_822_20220920/GTEX-NPJ7-0011-R10A-SM-HAKXW.A.transcripts.gtf.gz 20792572 gtf af34375eb3044fa499320017a70b3b1f tissue_normal GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.S13_L005_R1.A bc06c745-5e1d-4360-98b5-5932622e5ad6 GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.S13_L005_R1.A bc06c745-5e1d-4360-98b5-5932622e5ad6
GTEX-P44H-0011-R10A-SM-HAKXX GBM RNA-Seq_Transcript v1.5 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_RNA-Seq_Transcript_v1.5_RNA-Seq_Transcript.batch_822_20220920/GTEX-P44H-0011-R10A-SM-HAKXX.A.transcripts.gtf.gz 20846698 gtf 0b571da2a40d51da7d7a67be3370c7b6 tissue_normal GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.S14_L004_R1.A eaee871f-6c1c-4b68-ae45-c02b26e03112 GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.S14_L004_R1.A eaee871f-6c1c-4b68-ae45-c02b26e03112
GTEX-QVJO-0011-R10A-SM-HAKXV GBM RNA-Seq_Transcript v1.5 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_RNA-Seq_Transcript_v1.5_RNA-Seq_Transcript.batch_822_20220920/GTEX-QVJO-0011-R10A-SM-HAKXV.A.transcripts.gtf.gz 19781550 gtf 72eed381babd65fd5a36d86a1fbd7de4 tissue_normal GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.S20_L006_R1.A 3c47d5e3-b037-4bc6-80c2-eba31eeb58e0 GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.S20_L006_R1.A 3c47d5e3-b037-4bc6-80c2-eba31eeb58e0
GTEX-R55F-0011-R10A-SM-HAKXY GBM RNA-Seq_Transcript v1.5 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_RNA-Seq_Transcript_v1.5_RNA-Seq_Transcript.batch_822_20220920/GTEX-R55F-0011-R10A-SM-HAKXY.A.transcripts.gtf.gz 22686100 gtf 5cf0468e78eb7e2b68a06bc69f3b2e78 tissue_normal GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.S17_L006_R1.A ebbf052b-938b-4978-87bb-e203ecd9ea8d GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.S17_L006_R1.A ebbf052b-938b-4978-87bb-e203ecd9ea8d
GTEX-RN5K-0011-R10A-SM-HAKXU GBM RNA-Seq_Transcript v1.5 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_RNA-Seq_Transcript_v1.5_RNA-Seq_Transcript.batch_822_20220920/GTEX-RN5K-0011-R10A-SM-HAKXU.A.transcripts.gtf.gz 24868038 gtf dda16c01ccacc3331b71bb79028eecd8 tissue_normal GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.S18_L006_R1.A ae85444e-59ad-43b5-bab7-4c138b7291af GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.S18_L006_R1.A ae85444e-59ad-43b5-bab7-4c138b7291af
GTEX-RU72-0011-R10A-SM-HAKXS GBM RNA-Seq_Transcript v1.5 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_RNA-Seq_Transcript_v1.5_RNA-Seq_Transcript.batch_822_20220920/GTEX-RU72-0011-R10A-SM-HAKXS.A.transcripts.gtf.gz 22077298 gtf 08907533382c0f65c74d7b247b7fa283 tissue_normal GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.S16_L005_R1.A 991c731a-f70e-46c6-82f8-fe5b1c4f2014 GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.S16_L005_R1.A 991c731a-f70e-46c6-82f8-fe5b1c4f2014
GTEX-UTHO-0011-R10A-SM-HAKY2 GBM RNA-Seq_Transcript v1.5 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_RNA-Seq_Transcript_v1.5_RNA-Seq_Transcript.batch_822_20220920/GTEX-UTHO-0011-R10A-SM-HAKY2.A.transcripts.gtf.gz 20683959 gtf 00160fdee22f9d4691d742244698b283 tissue_normal GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.S15_L005_R1.A 440b3a6f-55b1-4a6e-b60f-875dff4a1648 GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.S15_L005_R1.A 440b3a6f-55b1-4a6e-b60f-875dff4a1648
GTEX-WVLH-0011-R10A-SM-HAKXZ GBM RNA-Seq_Transcript v1.5 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_RNA-Seq_Transcript_v1.5_RNA-Seq_Transcript.batch_822_20220920/GTEX-WVLH-0011-R10A-SM-HAKXZ.A.transcripts.gtf.gz 20253447 gtf e48198e0428b25de7aefaf7d62cef627 tissue_normal GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.S15_L004_R1.A cdf168a3-2eb6-4368-bf54-f23950626b10 GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.S15_L004_R1.A cdf168a3-2eb6-4368-bf54-f23950626b10
GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM RNA-Seq_Transcript v1.5 20220920 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_RNA-Seq_Transcript_v1.5_RNA-Seq_Transcript.batch_822_20220920/GTEX-Y8DK-0011-R10A-SM-HAKY1.A.transcripts.gtf.gz 21353322 gtf 056a3a39a88d648f1c7deb07839fed85 tissue_normal GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.S13_L004_R1.A 682b4036-c822-40d0-9662-2c18077f8493 GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.S13_L004_R1.A 682b4036-c822-40d0-9662-2c18077f8493
PT-Q2AG GBM RNA-Seq_Transcript v1.2 20210916 Y3 /CPTAC3.Y3_WashU/GBM/CPTAC3_GBM_RNA-Seq_Transcript_v1.2_batch_821_20210916/PT-Q2AG.tissue_normal.transcripts.gtf.gz 21638629 gtf 51770325d740a50bbbf9107cb1b0e7a1 tissue_normal PT-Q2AG.RNA-Seq.R1.A 624298d8-62b5-48e2-8dbb-114aa81b99b3 PT-Q2AG.RNA-Seq.R2.A 0fce5ae6-0a02-4802-8167-dd6405540e55

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