Auto update dev-preindustrial+concentrations to use access-esm1p5/pr46-1

config.yaml

@@ -1,164 +1,103 @@
-# A tutorial for running ACCESS ESM1.5 can be found at
-# https://access-hive.org.au/models/run-a-model/run-access-esm
-# Full details about the payu configuration settings are available at
-# https://payu.readthedocs.io/en/latest/config.html
-
-
-# PBS configuration
-
-# If submitting to a different project to your default, uncomment line below
-# and replace PROJECT_CODE with appropriate code. This may require setting shortpath
-# project: PROJECT_CODE
-
-# Force payu to always find, and save, files in this scratch project directory
-# shortpath: /scratch/PROJECT_CODE
-
-# Note: if laboratory is relative path, it is relative to shortpath/$USER
-laboratory: access-esm
-
-jobname: pre-industrial
-queue: normal
-walltime: 2:30:00
+calendar:
+  runtime:
+    days: 0
+    months: 0
+    years: 1
+  start:
+    days: 1
+    month: 1
+    year: 101
+collate:
+  exe: mppnccombine.spack
+  mem: 4GB
+  mpi: false
+  restart: true
+  walltime: 3600
 jobfs: 1500MB
-
-# Modules for loading model executables
+jobname: pre-industrial
+laboratory: access-esm
+manifest:
+  reproduce:
+    exe: false
+model: access
 modules:
-  use:
-      - /g/data/vk83/modules
   load:
-      - access-esm1p5/2024.12.1
-
-# Model configuration
-model: access
-
-submodels:
-    - name: atmosphere
-      model: um
-      ncpus: 240
-      exe: um_hg3.exe
-      input:
-        # Aerosols
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/aerosol/global.N96/2020.05.19/OCFF_1850_ESM1.anc
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/aerosol/global.N96/2020.05.19/BC_hi_1850_ESM1.anc
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/aerosol/global.N96/2020.05.19/scycl_1850_ESM1_v4.anc
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/aerosol/global.N96/2020.05.19/Bio_1850_ESM1.anc
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/biogenic_351sm.N96L38
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/sulpc_oxidants_N96_L38
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/DMS_conc.N96
-        # Forcing
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/forcing/global.N96/2020.05.19/ozone_1850_ESM1.anc
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/forcing/resolution_independent/2020.05.19/volcts_18502000ave.dat
-        # Land
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/land/biogeochemistry/global.N96/2020.05.19/Ndep_1850_ESM1.anc
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/land/soiltype/global.N96/2020.05.19/qrparm.soil_igbp_vg
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/land/vegetation/global.N96/2020.05.19/cable_vegfunc_N96.anc
-        - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/land/biogeochemistry/resolution_independent/2020.05.19/modis_phenology_csiro.txt
-        - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/land/biogeochemistry/resolution_independent/2020.05.19/pftlookup_csiro_v16_17tiles_wtlnds.csv
-        - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/land/biogeophysics/resolution_independent/2020.05.19/def_soil_params.txt
-        - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/land/biogeophysics/resolution_independent/2020.05.19/def_veg_params.txt
-        # Spectral
-        - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/spectral/resolution_independent/2020.05.19/spec3a_sw_hadgem1_6on
-        - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/spectral/resolution_independent/2020.05.19/spec3a_lw_hadgem1_6on
-        # Grids
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/grids/global.N96/2020.05.19/qrparm.mask
-        - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/grids/resolution_independent/2020.05.19/vertlevs_G3
-        # STASH
-        - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/stash/2024.11.01
-
-    - name: ocean
-      model: mom
-      ncpus: 180
-      exe: fms_ACCESS-CM.x
-      input:
-        # Biogeochemistry
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/biogeochemistry/global.1deg/2020.05.19/dust.nc
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/biogeochemistry/global.1deg/2020.05.19/ocmip2_press_monthly_om1p5_bc.nc
-        - /g/data/vk83/configurations/inputs/access-esm1p5/share/ocean/biogeochemistry/global.1deg/2024.07.12/bgc_param.nc
-        # Tides
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/tides/global.1deg/2020.05.19/roughness_amp.nc
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/tides/global.1deg/2020.05.19/tideamp.nc
-        # Shortwave
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/shortwave_penetration/global.1deg/2025.06.23/ssw_atten_depth.nc
-        # Grids
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/grids/mosaic/global.1deg/2020.05.19/grid_spec.nc
-        # Basin mask
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/basins/global.1deg/2020.05.19/basin_mask.nc
-
-    - name: ice
-      model: cice
-      ncpus: 12
-      exe: cice_access_360x300_12x1_12p.exe
-      input:
-        # Grids
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ice/grids/global.1deg/2020.05.19/kmt.nc
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ice/grids/global.1deg/2020.05.19/grid.nc
-        # Climatology
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ice/climatology/global.1deg/2020.05.19/monthly_sstsss.nc
-
-    - name: coupler
-      model: oasis
-      ncpus: 0
-      input:
-        # Grids
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/grids/global.oi_1deg.a_N96/2020.05.19/grids.nc
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/grids/global.oi_1deg.a_N96/2020.05.19/areas.nc
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/grids/global.oi_1deg.a_N96/2020.05.19/masks.nc
-        # Remapping weights
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_cice_to_um1t_CONSERV_FRACNNEI.nc
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_um1u_to_cice_CONSERV_FRACNNEI.nc
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_um1t_to_cice_CONSERV_DESTAREA.nc
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_cice_to_um1u_CONSERV_FRACNNEI.nc
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_um1v_to_cice_CONSERV_FRACNNEI.nc
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_um1t_to_cice_CONSERV_FRACNNEI.nc
-        - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_cice_to_um1v_CONSERV_FRACNNEI.nc
-
-# Collation
-collate:
-    exe: mppnccombine.spack
-    restart: true
-    mem: 4GB
-    walltime: 1:00:00
-    mpi: false
-
+  - access-esm1p5/pr46-1
+  use:
+  - /g/data/vk83/modules
+  - /g/data/vk83/prerelease/modules
+payu_minimum_version: 1.1.6
+postscript: -v PAYU_CURRENT_OUTPUT_DIR,PROJECT  -lstorage=${PBS_NCI_STORAGE} ./scripts/NetCDF-conversion/UM_conversion_job.sh
+qsub_flags: -W umask=027
+queue: normal
 restart: /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/restart/
-
-# Timing controls
-calendar:
-    start:
-        year: 101
-        month: 1
-        days: 1
-
-    runtime:
-        years: 1
-        months: 0
-        days: 0
-
-runspersub: 1
-
-# Misc
 restart_freq: 10YS
-
 runlog: true
-manifest:
-  reproduce:
-    exe: True
-
-payu_minimum_version: 1.1.6
+runspersub: 1
 stacksize: unlimited
-qsub_flags: -W umask=027
-
-
-# Sync options for automatically copying data from ephemeral scratch space to
-# longer term storage
+submodels:
+- exe: um_hg3.exe
+  input:
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/aerosol/global.N96/2020.05.19/OCFF_1850_ESM1.anc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/aerosol/global.N96/2020.05.19/BC_hi_1850_ESM1.anc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/aerosol/global.N96/2020.05.19/scycl_1850_ESM1_v4.anc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/aerosol/global.N96/2020.05.19/Bio_1850_ESM1.anc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/biogenic_351sm.N96L38
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/sulpc_oxidants_N96_L38
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/aerosol/global.N96/2020.05.19/DMS_conc.N96
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/forcing/global.N96/2020.05.19/ozone_1850_ESM1.anc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/forcing/resolution_independent/2020.05.19/volcts_18502000ave.dat
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/pre-industrial/atmosphere/land/biogeochemistry/global.N96/2020.05.19/Ndep_1850_ESM1.anc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/land/soiltype/global.N96/2020.05.19/qrparm.soil_igbp_vg
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/land/vegetation/global.N96/2020.05.19/cable_vegfunc_N96.anc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/land/biogeochemistry/resolution_independent/2020.05.19/modis_phenology_csiro.txt
+  - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/land/biogeochemistry/resolution_independent/2020.05.19/pftlookup_csiro_v16_17tiles_wtlnds.csv
+  - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/land/biogeophysics/resolution_independent/2020.05.19/def_soil_params.txt
+  - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/land/biogeophysics/resolution_independent/2020.05.19/def_veg_params.txt
+  - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/spectral/resolution_independent/2020.05.19/spec3a_sw_hadgem1_6on
+  - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/spectral/resolution_independent/2020.05.19/spec3a_lw_hadgem1_6on
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/atmosphere/grids/global.N96/2020.05.19/qrparm.mask
+  - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/grids/resolution_independent/2020.05.19/vertlevs_G3
+  - /g/data/vk83/configurations/inputs/access-esm1p5/share/atmosphere/stash/2024.11.01
+  model: um
+  name: atmosphere
+  ncpus: 240
+- exe: fms_ACCESS-CM.x
+  input:
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/biogeochemistry/global.1deg/2020.05.19/dust.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/biogeochemistry/global.1deg/2020.05.19/ocmip2_press_monthly_om1p5_bc.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/share/ocean/biogeochemistry/global.1deg/2024.07.12/bgc_param.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/tides/global.1deg/2020.05.19/roughness_amp.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/tides/global.1deg/2020.05.19/tideamp.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/shortwave_penetration/global.1deg/2025.06.23/ssw_atten_depth.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/grids/mosaic/global.1deg/2020.05.19/grid_spec.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ocean/basins/global.1deg/2020.05.19/basin_mask.nc
+  model: mom
+  name: ocean
+  ncpus: 180
+- exe: cice_access_360x300_12x1_12p.exe
+  input:
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ice/grids/global.1deg/2020.05.19/kmt.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ice/grids/global.1deg/2020.05.19/grid.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/ice/climatology/global.1deg/2020.05.19/monthly_sstsss.nc
+  model: cice
+  name: ice
+  ncpus: 12
+- input:
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/grids/global.oi_1deg.a_N96/2020.05.19/grids.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/grids/global.oi_1deg.a_N96/2020.05.19/areas.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/grids/global.oi_1deg.a_N96/2020.05.19/masks.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_cice_to_um1t_CONSERV_FRACNNEI.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_um1u_to_cice_CONSERV_FRACNNEI.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_um1t_to_cice_CONSERV_DESTAREA.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_cice_to_um1u_CONSERV_FRACNNEI.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_um1v_to_cice_CONSERV_FRACNNEI.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_um1t_to_cice_CONSERV_FRACNNEI.nc
+  - /g/data/vk83/configurations/inputs/access-esm1p5/modern/share/coupler/remapping_weights/global.oi_1deg.a_N96/2020.05.19/rmp_cice_to_um1v_CONSERV_FRACNNEI.nc
+  model: oasis
+  name: coupler
+  ncpus: 0
 sync:
-    enable: False # set path below and change to true
-    path: null # Set to location on /g/data or a remote server and path (rsync syntax)
-
-# If a postscript included (such as the automated netcdf conversion), the latest output and restart files will not
-# be automatically synced at the end of a run. To sync the latest output after a postscript has completed,
-#  manually run `payu sync` from the command line.
-
-# userscripts:
-
-postscript: -v PAYU_CURRENT_OUTPUT_DIR,PROJECT  -lstorage=${PBS_NCI_STORAGE} ./scripts/NetCDF-conversion/UM_conversion_job.sh
+  enable: false
+  path: null
+walltime: 9000