Merge branch 'main' into claude/optimistic-diffie-2ef839

Author: d-v-b

.github/workflows/check_changelogs.yml

@@ -17,12 +17,12 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
         with:
           persist-credentials: false
 
       - name: Install uv
-        uses: astral-sh/setup-uv@11f9893b081a58869d3b5fccaea48c9e9e46f990 # v8.3.2
+        uses: astral-sh/setup-uv@c771a70e6277c0a99b617c7a806ffedaca235ff9 # v9.0.0
 
       - name: Check zarr-python changelog entries
         run: uv run --no-sync python ci/check_changelog_entries.py

.github/workflows/codspeed.yml

@@ -23,7 +23,7 @@ jobs:
       github.event_name == 'workflow_dispatch' ||
       (github.event_name == 'pull_request' && contains(github.event.pull_request.labels.*.name, 'benchmark'))
     steps:
-    - uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
+    - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
       with:
         fetch-depth: 0
         persist-credentials: false
@@ -32,7 +32,7 @@ jobs:
       with:
         version: '1.16.5'
     - name: Run the benchmarks
-      uses: CodSpeedHQ/action@f99becdce5e5d51fd556489ebef684f4ecfd6286 # v4.18.5
+      uses: CodSpeedHQ/action@88472375d0a4572cf70a9f1fe3a4e0ab8da1b924 # v5.0.1
       env:
         ZARR_BENCHMARK_CLEAR_CACHE: '1'
       with:

.github/workflows/docs.yml

@@ -19,10 +19,10 @@ jobs:
     name: Check docs
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
         with:
           persist-credentials: false
-      - uses: astral-sh/setup-uv@11f9893b081a58869d3b5fccaea48c9e9e46f990 # v8.3.2
+      - uses: astral-sh/setup-uv@c771a70e6277c0a99b617c7a806ffedaca235ff9 # v9.0.0
       - run: uv sync --group docs
       # Fast source-level guards that need no built site, so they run before the (slower)
       # build for a quick failure: every public export is in the API reference, and no

.github/workflows/downstream.yml

@@ -21,13 +21,13 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Check out zarr-python
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
         with:
           fetch-depth: 0
           persist-credentials: false
 
       - name: Check out xarray
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
         with:
           repository: pydata/xarray
           path: xarray
@@ -40,12 +40,12 @@ jobs:
       # `meson-python: error: Unknown option "pixi-conda-environment"`, breaking
       # the job before any test runs. Tests that need a backend we don't install
       # are skipped via xarray's `requires_*` markers, not failed.
-      - uses: actions/setup-python@ece7cb06caefa5fff74198d8649806c4678c61a1 # v6.3.0
+      - uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
         with:
           python-version: '3.13'
 
       - name: Install uv
-        uses: astral-sh/setup-uv@11f9893b081a58869d3b5fccaea48c9e9e46f990 # v8.3.2
+        uses: astral-sh/setup-uv@c771a70e6277c0a99b617c7a806ffedaca235ff9 # v9.0.0
 
       - name: Install xarray and test dependencies
         working-directory: xarray
@@ -83,26 +83,26 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Check out zarr-python
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
         with:
           fetch-depth: 0
           persist-credentials: false
 
       - name: Check out numcodecs
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
         with:
           repository: zarr-developers/numcodecs
           fetch-depth: 0
           path: numcodecs
           submodules: recursive
           persist-credentials: false
 
-      - uses: actions/setup-python@ece7cb06caefa5fff74198d8649806c4678c61a1 # v6.3.0
+      - uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
         with:
           python-version: '3.13'
 
       - name: Install uv
-        uses: astral-sh/setup-uv@11f9893b081a58869d3b5fccaea48c9e9e46f990 # v8.3.2
+        uses: astral-sh/setup-uv@c771a70e6277c0a99b617c7a806ffedaca235ff9 # v9.0.0
 
       - name: Install numcodecs with test-zarr-main group
         working-directory: numcodecs

.github/workflows/gpu_test.yml

@@ -34,7 +34,7 @@ jobs:
         python-version: ['3.12']
 
     steps:
-    - uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
+    - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
       with:
         fetch-depth: 0  # grab all branches and tags
         persist-credentials: false
@@ -57,12 +57,12 @@ jobs:
         echo $LD_LIBRARY_PATH
         nvcc -V
     - name: Set up Python
-      uses: actions/setup-python@ece7cb06caefa5fff74198d8649806c4678c61a1 # v6.3.0
+      uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
       with:
         python-version: ${{ matrix.python-version }}
         cache: 'pip'
     - name: Install uv
-      uses: astral-sh/setup-uv@11f9893b081a58869d3b5fccaea48c9e9e46f990 # v8.3.2
+      uses: astral-sh/setup-uv@c771a70e6277c0a99b617c7a806ffedaca235ff9 # v9.0.0
     - name: Install Hatch
       uses: pypa/hatch@257e27e51a6a5616ed08a39a408a21c35c9931bc
       with:

.github/workflows/hypothesis.yaml

@@ -39,7 +39,7 @@ jobs:
         dependency-set: ["optional"]
 
     steps:
-    - uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
+    - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
       with:
         persist-credentials: false
     - name: Set HYPOTHESIS_PROFILE based on trigger
@@ -52,12 +52,12 @@ jobs:
           echo "HYPOTHESIS_PROFILE=ci" >> $GITHUB_ENV
         fi
     - name: Set up Python
-      uses: actions/setup-python@ece7cb06caefa5fff74198d8649806c4678c61a1 # v6.3.0
+      uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
       with:
         python-version: ${{ matrix.python-version }}
         cache: 'pip'
     - name: Install uv
-      uses: astral-sh/setup-uv@11f9893b081a58869d3b5fccaea48c9e9e46f990 # v8.3.2
+      uses: astral-sh/setup-uv@c771a70e6277c0a99b617c7a806ffedaca235ff9 # v9.0.0
     - name: Install Hatch
       uses: pypa/hatch@257e27e51a6a5616ed08a39a408a21c35c9931bc
       with:
@@ -109,7 +109,7 @@ jobs:
         && steps.status.outcome == 'failure'
         && github.event_name == 'schedule'
         && github.repository_owner == 'zarr-developers'
-      uses: scientific-python/issue-from-pytest-log-action@87351a8f864e969567cda22a25a2f214cbe2340f # v1.6.0
+      uses: scientific-python/issue-from-pytest-log-action@054799b34bd75a5fd6c86277a4a8a575224e60c6 # v1.6.1
       with:
         log-path: output-${{ matrix.python-version }}-log.jsonl
         issue-title: "Nightly Hypothesis tests failed"

.github/workflows/links.yml

@@ -13,7 +13,7 @@ jobs:
     permissions:
       issues: write # required for peter-evans/create-issue-from-file
     steps:
-      - uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
         with:
           persist-credentials: false
 

.github/workflows/lint.yml

@@ -19,15 +19,15 @@ jobs:
     name: Lint
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
         with:
           persist-credentials: false
       - name: Set up Python
-        uses: actions/setup-python@ece7cb06caefa5fff74198d8649806c4678c61a1 # v6.3.0
+        uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
         with:
           python-version: "3.12"
       - name: Install uv
-        uses: astral-sh/setup-uv@11f9893b081a58869d3b5fccaea48c9e9e46f990 # v8.3.2
+        uses: astral-sh/setup-uv@c771a70e6277c0a99b617c7a806ffedaca235ff9 # v9.0.0
         with:
           enable-cache: true
-      - uses: j178/prek-action@e98a699c41eb69ab013a45817a0406469a748f8d # v2.0.5
+      - uses: j178/prek-action@4e14d07f9231acabce116ccfca13b13dd9755ece # v3.0.0

.github/workflows/nightly_wheels.yml

@@ -22,13 +22,13 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
         with:
           submodules: true
           fetch-depth: 0
           persist-credentials: false
 
-      - uses: actions/setup-python@ece7cb06caefa5fff74198d8649806c4678c61a1 # v6.3.0
+      - uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
         name: Install Python
         with:
           python-version: '3.14'

.github/workflows/releases.yml

@@ -26,13 +26,13 @@ jobs:
       fail-fast: false
 
     steps:
-      - uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0 # v7.0.0
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
         with:
           submodules: true
           fetch-depth: 0
           persist-credentials: false
 
-      - uses: actions/setup-python@ece7cb06caefa5fff74198d8649806c4678c61a1 # v6.3.0
+      - uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
         name: Install Python
         with:
           python-version: '3.12'
@@ -81,8 +81,8 @@ jobs:
           name: releases
           path: dist
       - name: Generate artifact attestation
-        uses: actions/attest@f7c74d28b9d84cb8768d0b8ca14a4bac6ef463e6 # v4.2.0
+        uses: actions/attest@508db95dd578ae2727ebd6217d5ba78e4fbda05d # v4.2.1
         with:
           subject-path: dist/*
       - name: Publish package to PyPI
-        uses: pypa/gh-action-pypi-publish@cef221092ed1bacb1cc03d23a2d87d1d172e277b # v1.14.0
+        uses: pypa/gh-action-pypi-publish@dc37677b2e1c63e2034f94d8a5b11f265b73ba33 # v1.14.2