spm_vb_get_Gn.m

function [G,G1,G2,G3] = spm_vb_get_Gn(Y,slice,n)
% Compute Gn for VB-GLM-AR modelling 
% FORMAT [G,G1,G2,G3] = spm_vb_get_Gn(Y,slice,n)
%
% Y      - [T x N] time series 
% slice  - data structure (see spm_vb_glmar) 
% n      - voxel number
%__________________________________________________________________________
% Copyright (C) 2005-2014 Wellcome Trust Centre for Neuroimaging

% Will Penny and Nelson Trujillo-Barreto
% $Id: spm_vb_get_Gn.m 6079 2014-06-30 18:25:37Z spm $

p = slice.p;
k = slice.k;

a_mean_t = slice.ap_mean(:,n);
a_mean   = a_mean_t';
block_n  = [(n-1)*k+1:n*k];
w_mean   = slice.w_mean(block_n,1);
w2       = slice.w2{n};
a2       = slice.a2{n};

% Equations 77 to 81 of paper VB1 but implemented 
% efficiently using cross-covariance method described in paper VB3
G11 = slice.y2(n);
G12 = ones(1,p)*(a2.*slice.I.Gy(:,:,n))*ones(p,1);
G13 = -2*slice.I.gy(:,n)'*a_mean_t;
G1  = G11 + G12 + G13;

G21 = ones(1,k)*(w2.*slice.I.Gx)*ones(k,1);
G22 = trace(slice.I.A2_tilde(:,:,n)*slice.w_cov{n});
G23 = ones(1,k)*((w_mean*w_mean').*slice.I.A2_tilde(:,:,n))*ones(k,1);
G24 = 2*ones(1,k)*(w2.*slice.I.A3a_tilde(:,:,n))*ones(k,1);
G2  = G21 + G22 + G23 + G24;

G31 = -2*w_mean'*slice.I.gxy(:,n);
G32 = 2*a_mean*slice.I.rxy(:,:,n)*w_mean;
G33 = 2*a_mean*slice.I.Gxy(:,:,n)*w_mean;
G34 = -2*ones(1,p)*(a2.*slice.I.W_tilde(:,:,n))*ones(p,1);
G3  = G31 + G32 + G33 + G34;

G   = G1 + G2 +G3;