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Update ensembl link GRCh37
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03-Week3.Rmd

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@@ -167,6 +167,6 @@ How does your answer compare with the adjusted p-value found in the <kbd>assoc</
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1. A Manhattan plot of the SNPs in the region
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2. Information extracted from the <kbd>assoc</kbd> dataframe about the most-significant SNP
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3. Calculation of the crude logOR and p-value of the most-significant SNP
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4. Biological relevance of the variant you found, located in the [enselmbl genome browser](https://useast.ensembl.org/Homo_sapiens/Info/Index): What is the frequency in the European population of the allele you identified?&nbsp; What are some nearby genes?&nbsp; What is the likely causal variant linked to the variant you found?&nbsp; Hint: see [@easton_genome-wide_2007].
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4. Biological relevance of the variant you found, located in the [ensembl genome browser](https://grch37.ensembl.org/Homo_sapiens/Info/Index): What is the frequency in the European population of the allele you identified?&nbsp; What are some nearby genes?&nbsp; What is the likely causal variant linked to the variant you found?&nbsp; Hint: see [@easton_genome-wide_2007].
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## References {#Week3_ref}

docs/Biol 350 slides.pptx

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docs/Week3.html

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@@ -298,7 +298,7 @@ <h3><span class="header-section-number">4.2.4</span> To turn in:<a href="Week3.h
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<li>A Manhattan plot of the SNPs in the region</li>
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<li>Information extracted from the <kbd>assoc</kbd> dataframe about the most-significant SNP</li>
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<li>Calculation of the crude logOR and p-value of the most-significant SNP</li>
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<li>Biological relevance of the variant you found, located in the <a href="https://useast.ensembl.org/Homo_sapiens/Info/Index">enselmbl genome browser</a>: What is the frequency in the European population of the allele you identified?  What are some nearby genes?  What is the likely causal variant linked to the variant you found?  Hint: see <span class="citation">[<a href="#ref-easton_genome-wide_2007">18</a>]</span>.</li>
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<li>Biological relevance of the variant you found, located in the <a href="https://grch37.ensembl.org/Homo_sapiens/Info/Index">ensembl genome browser</a>: What is the frequency in the European population of the allele you identified?  What are some nearby genes?  What is the likely causal variant linked to the variant you found?  Hint: see <span class="citation">[<a href="#ref-easton_genome-wide_2007">18</a>]</span>.</li>
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</ol>
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</div>
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docs/search_index.json

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series.html

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<li>A Manhattan plot of the SNPs in the region</li>
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<li>Information extracted from the <kbd>assoc</kbd> dataframe about the most-significant SNP</li>
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<li>Calculation of the crude logOR and p-value of the most-significant SNP</li>
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<li>Biological relevance of the variant you found, located in the <a href="https://useast.ensembl.org/Homo_sapiens/Info/Index">enselmbl genome browser</a>: What is the frequency in the European population of the allele you identified?  What are some nearby genes?  What is the likely causal variant linked to the variant you found?  Hint: see <span class="citation">[<a href="#ref-easton_genome-wide_2007">18</a>]</span>.</li>
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<li>Biological relevance of the variant you found, located in the <a href="https://grch37.ensembl.org/Homo_sapiens/Info/Index">ensembl genome browser</a>: What is the frequency in the European population of the allele you identified?  What are some nearby genes?  What is the likely causal variant linked to the variant you found?  Hint: see <span class="citation">[<a href="#ref-easton_genome-wide_2007">18</a>]</span>.</li>
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</ol>
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</div>
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