IICREstimator/parameters.json at master · willyrv/IICREstimator · GitHub

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{
  "path2ms" : "./",
  "use_real_data" : [{
    "psmc_results_file" : "experiment_1.psmc",
    "mu": 2.5e-8,
    "binsize": 100,
    "label":"IICR from real data",
    "color": "r",
    "linestyle": "-",
    "linewidth": 1,
    "alpha": 1
  }],
  "scenarios" : [
  {"ms_command":"ms 2 1000 -T -L -I 10 2 0 0 0 0 0 0 0 0 0 1",
    "label":"n islands. n=10 M=1",
    "color": "g",
    "linestyle": ":",
    "linewidth": 1,
    "alpha": 1
    }
  ],
  "theoretical_IICR_nisland" : [
    {"n": 10,
    "M": 1,
    "sampling_same_island": 1,
    "label": "theoretical IICR T2 n10M1",
    "color": "k",
    "linestyle": "-",
    "linewidth": 1,
    "alpha": 0.5
    },
    {"n": 10,
    "M": 1,
    "sampling_same_island": 0,
    "label": "theoretical IICR T2 n5M1",
    "color": "k",
    "linestyle": "-",
    "linewidth": 1,
    "alpha": 0.5
    }
  ],
  "peicewise_constant_functions":[
  ],
  "computation_parameters" : {
    "x_vector_type": "log",
    "start": 0,
    "end": 100,
    "number_of_values": 64,
    "pattern": "4*1+25*2+4+6"
    },
  "custom_x_vector": {
  "set_custom_xvector": 0,
  "x_vector": 0
  },
  "scale_params":{
  "N0": 0.01,
  "generation_time": 1
  },
  "plot_params":{
    "plot_theor_IICR": 0,
    "plot_real_ms_history": 0,
    "plot_limits": [1e-4, 1, 0, 0.5],
    "plot_title": "IICR example",
    "plot_xlabel": "time ",
    "plot_ylabel": "IICR",
    "show_plot": 1,
    "save_figure": 1
  },
  "number_of_repetitions": {
  "n_rep": 1
  },
  "vertical_lines":[],
  "plot_densities": {
  "densities_to_plot": [],
  "x_lim": [-0.05, 2],
  "y_lim": [0, 0.5]
  },
  "save_IICR_as_file":1
}