Error in read.table(file = file, header = header, sep = sep, quote = quote,

[xingguowu]

Nice tools!@vlothec
The error occured when I'm using this tool to analysis the sequences for indentifying the tandem repeats.

[1] "Export gff function"
[1] "read repeats"
[1] "wrtiting repeats"
[1] "finished saving"
[1] "edit distance"
[1] "Available classes: "
[1] "no classes assigned to the repeats to calculate edit distance, stopping edit distance calculation"
          used  (Mb) gc trigger  (Mb) max used  (Mb)
Ncells 2877413 153.7    5528760 295.3  5528760 295.3
Vcells 4936441  37.7   10146329  77.5  7742322  59.1
[1] "Available classes: NA"
          used  (Mb) gc trigger  (Mb) max used  (Mb)
Ncells 2884432 154.1    5528760 295.3  5528760 295.3
Vcells 4955006  37.9   10146329  77.5  7742322  59.1
[1] "plotting"
[1] "circos"
Error in read.table(file = file, header = header, sep = sep, quote = quote,  :
  no lines available in input
Calls: circos_plotter -> read.csv -> read.table
Execution halted

This is my commnads，it can not work only in this sequence.
、
~/soft/TRASH/TRASH_run.sh chr1_24000000_24100000.fa --o /work/result1

[vlothec]

Hello, the circos plot package has been updated which caused problems with its functioning. I have updated the installation files to keep the packages up to date instead of fixing them at a single version, please try reinstalling TRASH and let me know if the issue is fixed, as I was unable to reproduce this