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Copy pathMS_plot_power.m
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299 lines (290 loc) · 16.3 KB
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function MS_plot_psd(cfg_in, Naris)
%% MS_plot_psd: plots multiple power spectral densities for the data files
% in the "Naris" structure (output from MS_collect_psd)
%
% inputs:
% -cfg_in: [struct] contains configuration paramters
% -Naris: [struct] contains power and frequency values for each channel
% for each subject/session/phase
%
% this script currently uses a global parameter set to determine where
% to save the output figures
%% set up defaults
cfg_def = [];
cfg_def.type = 'both'; % whether to output the 'standard' or "white" filtered PSD
cfg_def.linewidth = 2;
cfg = ProcessConfig2(cfg_def, cfg_in);
global PARAMS
c_ord = linspecer(length(PARAMS.Phases));
%% cycle through data from each subject, session, and channel to give an
% overview figure (raster) and individual PSDs (vector)
switch cfg.type
case {'standard'} % make use the standard PSD
sub_list = fieldnames(Naris);
for iSub = 1:length(fieldnames(Naris))
sess_list = fieldnames(Naris.(sub_list{iSub}));
for iSess = 1:length(sess_list);
site_list = fieldnames(Naris.(sub_list{iSub}).(sess_list{iSess}).(PARAMS.Phases{1}));
S1 = ceil(length(site_list)/2);
h.(['n' num2str(iSess)]) = figure((iSub)*10 + (iSess));
iSite_pot= 0; iSite_trk = 0;
for iSite = 1:length(site_list)
h_site.(['n' num2str(iSite)]) = figure((iSub)*100 + (iSess)*10 +(iSite));
for iPhase = 1:length(PARAMS.Phases)
hold on
plot(Naris.(sub_list{iSub}).(sess_list{iSess}).(PARAMS.Phases{iPhase}).(site_list{iSite}).psd.F,...
10*log10(Naris.(sub_list{iSub}).(sess_list{iSess}).(PARAMS.Phases{iPhase}).(site_list{iSite}).psd.Pxx),...
'color', c_ord(iPhase,:), 'linewidth', cfg.linewidth)
end
xlim([0 120])
xlabel('Frequency (Hz)')
ylabel('Power')
% title(strrep([sess_list{iSess} ' ' site_list{iSite}], '_', '-'))
%legend(PARAMS.Phases)
SetFigure([], h_site.(['n' num2str(iSite)]))
saveas(h_site.(['n' num2str(iSite)]), [PARAMS.inter_dir sess_list{iSess} '_' site_list{iSite}], 'png')
saveas(h_site.(['n' num2str(iSite)]), [PARAMS.inter_dir sess_list{iSess} '_' site_list{iSite}], 'epsc')
close(h_site.(['n' num2str(iSite)]));
if strcmp(site_list{iSite}(end-2:end), 'trk')
h_all_trk= figure((iSub)*1000 + (iSess));
iSite_trk = iSite_trk+1;
subplot(3,3,iSite_trk)
else
h_all_pot = figure((iSub)*100 + (iSess));
iSite_pot = iSite_pot+1;
subplot(3,3,iSite_pot)
end
for iPhase = 1:length(PARAMS.Phases)
hold on
plot(Naris.(sub_list{iSub}).(sess_list{iSess}).(PARAMS.Phases{iPhase}).(site_list{iSite}).psd.F,...
10*log10(Naris.(sub_list{iSub}).(sess_list{iSess}).(PARAMS.Phases{iPhase}).(site_list{iSite}).psd.Pxx),...
'color', c_ord(iPhase,:), 'linewidth', cfg.linewidth)
end
xlim([0 120])
xlabel(site_list{iSite})
ylabel('Power')
% legend(PARAMS.Phases)
end
fig_pos = get(h_all_pot, 'position');
tightfig(h_all_pot)
set(h_all_pot, 'position', [fig_pos(1), fig_pos(2), 700, 700])
fig_pos = get(h_all_trk, 'position');
tightfig(h_all_trk)
set(h_all_trk, 'position', [fig_pos(1), fig_pos(2), 700, 700])
% SetFigure([], h_all)
if isunix
sum_dir = '/Summary/';
mkdir(PARAMS.inter_dir, sum_dir)
else
sum_dir = '\Summary\';
mkdir(PARAMS.inter_dir, sum_dir)
end
saveas(h_all_pot, [PARAMS.inter_dir sum_dir sess_list{iSess} '_all_pot'], 'png')
saveas(h_all_pot, [PARAMS.inter_dir sum_dir sess_list{iSess} '_all_pot'], 'epsc')
saveas(h_all_trk, [PARAMS.inter_dir sum_dir sess_list{iSess} '_all_trk'], 'png')
saveas(h_all_trk, [PARAMS.inter_dir sum_dir sess_list{iSess} '_all_trk'], 'epsc')
close all
end
end
case{'white'};
sub_list = fieldnames(Naris);
for iSub = 1:length(fieldnames(Naris))
sess_list = fieldnames(Naris.(sub_list{iSub}));
for iSess = 1:length(sess_list);
site_list = fieldnames(Naris.(sub_list{iSub}).(sess_list{iSess}).(PARAMS.Phases{1}));
S1 = ceil(length(site_list)/2);
h.(['n' num2str(iSess)]) = figure((iSub)*10 + (iSess));
iSite_pot= 0; iSite_trk = 0;
for iSite = 1:length(site_list)
h_site.(['n' num2str(iSite)]) = figure((iSub)*100 + (iSess)*10 +(iSite));
for iPhase = 1:length(PARAMS.Phases)
hold on
plot(Naris.(sub_list{iSub}).(sess_list{iSess}).(PARAMS.Phases{iPhase}).(site_list{iSite}).psd.White_F,...
10*log10(Naris.(sub_list{iSub}).(sess_list{iSess}).(PARAMS.Phases{iPhase}).(site_list{iSite}).psd.White_Pxx),...
'color', c_ord(iPhase,:), 'linewidth', cfg.linewidth)
end
xlim([0 120])
xlabel('Frequency (Hz)')
ylabel('Power')
% title(strrep([sess_list{iSess} ' ' site_list{iSite}], '_', '-'))
%legend(PARAMS.Phases)
SetFigure([], h_site.(['n' num2str(iSite)]))
saveas(h_site.(['n' num2str(iSite)]), [PARAMS.inter_dir sess_list{iSess} '_' site_list{iSite} '_white'], 'png')
saveas(h_site.(['n' num2str(iSite)]), [PARAMS.inter_dir sess_list{iSess} '_' site_list{iSite} '_white'], 'epsc')
close(h_site.(['n' num2str(iSite)]));
if strcmp(site_list{iSite}(end-2:end), 'trk')
h_all_trk= figure((iSub)*1000 + (iSess));
iSite_trk = iSite_trk+1;
subplot(3,3,iSite_trk)
else
h_all_pot = figure((iSub)*100 + (iSess));
iSite_pot = iSite_pot+1;
subplot(3,3,iSite_pot)
end
for iPhase = 1:length(PARAMS.Phases)
hold on
plot(Naris.(sub_list{iSub}).(sess_list{iSess}).(PARAMS.Phases{iPhase}).(site_list{iSite}).psd.White_F,...
10*log10(Naris.(sub_list{iSub}).(sess_list{iSess}).(PARAMS.Phases{iPhase}).(site_list{iSite}).psd.White_Pxx),...
'color', c_ord(iPhase,:), 'linewidth', cfg.linewidth)
end
xlim([0 120])
xlabel(site_list{iSite})
ylabel('Power')
% legend(PARAMS.Phases, 'location', 'SouthEast')
end
fig_pos = get(h_all_pot, 'position');
tightfig(h_all_pot)
set(h_all_pot, 'position', [fig_pos(1), fig_pos(2), 700, 700])
fig_pos = get(h_all_trk, 'position');
tightfig(h_all_trk)
set(h_all_trk, 'position', [fig_pos(1), fig_pos(2), 700, 700])
% SetFigure([], h_all)
if isunix
sum_dir = '/Summary/';
mkdir(PARAMS.inter_dir, sum_dir)
else
sum_dir = '\Summary\';
mkdir(PARAMS.inter_dir, sum_dir)
end
saveas(h_all_pot, [PARAMS.inter_dir sum_dir sess_list{iSess} '_all_white_pot'], 'png')
saveas(h_all_pot, [PARAMS.inter_dir sum_dir sess_list{iSess} '_all_white_pot'], 'epsc')
saveas(h_all_trk, [PARAMS.inter_dir sum_dir sess_list{iSess} '_all_white_trk'], 'png')
saveas(h_all_trk, [PARAMS.inter_dir sum_dir sess_list{iSess} '_all_white_trk'], 'epsc')
close all
end
end
otherwise % b/c Matlab can't deal with "or" in a case switch...
sub_list = fieldnames(Naris);
for iSub = 1:length(fieldnames(Naris))
sess_list = fieldnames(Naris.(sub_list{iSub}));
for iSess = 1:length(sess_list);
site_list = fieldnames(Naris.(sub_list{iSub}).(sess_list{iSess}).(PARAMS.Phases{1}));
S1 = ceil(length(site_list)/2);
h.(['n' num2str(iSess)]) = figure((iSub)*10 + (iSess));
iSite_pot= 0; iSite_trk = 0;
for iSite = 1:length(site_list)
h_site.(['n' num2str(iSite)]) = figure((iSub)*100 + (iSess)*10 +(iSite));
for iPhase = 1:length(PARAMS.Phases)
hold on
plot(Naris.(sub_list{iSub}).(sess_list{iSess}).(PARAMS.Phases{iPhase}).(site_list{iSite}).psd.F,...
10*log10(Naris.(sub_list{iSub}).(sess_list{iSess}).(PARAMS.Phases{iPhase}).(site_list{iSite}).psd.Pxx),...
'color', c_ord(iPhase,:), 'linewidth', cfg.linewidth)
end
xlim([0 120])
xlabel('Frequency (Hz)')
ylabel('Power')
% title(strrep([sess_list{iSess} ' ' site_list{iSite}], '_', '-'))
%legend(PARAMS.Phases)
SetFigure([], h_site.(['n' num2str(iSite)]))
saveas(h_site.(['n' num2str(iSite)]), [PARAMS.inter_dir sess_list{iSess} '_' site_list{iSite}], 'png')
saveas(h_site.(['n' num2str(iSite)]), [PARAMS.inter_dir sess_list{iSess} '_' site_list{iSite}], 'epsc')
close(h_site.(['n' num2str(iSite)]));
if strcmp(site_list{iSite}(end-2:end), 'trk')
h_all_trk= figure((iSub)*1000 + (iSess));
iSite_trk = iSite_trk+1;
subplot(3,3,iSite_trk)
else
h_all_pot = figure((iSub)*100 + (iSess));
iSite_pot = iSite_pot+1;
subplot(3,3,iSite_pot)
end
for iPhase = 1:length(PARAMS.Phases)
hold on
plot(Naris.(sub_list{iSub}).(sess_list{iSess}).(PARAMS.Phases{iPhase}).(site_list{iSite}).psd.F,...
10*log10(Naris.(sub_list{iSub}).(sess_list{iSess}).(PARAMS.Phases{iPhase}).(site_list{iSite}).psd.Pxx),...
'color', c_ord(iPhase,:), 'linewidth', cfg.linewidth)
end
xlim([0 120])
xlabel(site_list{iSite})
ylabel('Power')
% legend(PARAMS.Phases)
end
fig_pos = get(h_all_pot, 'position');
tightfig(h_all_pot)
set(h_all_pot, 'position', [fig_pos(1), fig_pos(2), 700, 700])
fig_pos = get(h_all_trk, 'position');
tightfig(h_all_trk)
set(h_all_trk, 'position', [fig_pos(1), fig_pos(2), 700, 700])
% SetFigure([], h_all)
if isunix
sum_dir = '/Summary/';
mkdir(PARAMS.inter_dir, sum_dir)
else
sum_dir = '\Summary\';
mkdir(PARAMS.inter_dir, sum_dir)
end
saveas(h_all_pot, [PARAMS.inter_dir sum_dir sess_list{iSess} '_all_pot'], 'png')
saveas(h_all_pot, [PARAMS.inter_dir sum_dir sess_list{iSess} '_all_pot'], 'epsc')
saveas(h_all_trk, [PARAMS.inter_dir sum_dir sess_list{iSess} '_all_trk'], 'png')
saveas(h_all_trk, [PARAMS.inter_dir sum_dir sess_list{iSess} '_all_trk'], 'epsc')
close all
end
end
sub_list = fieldnames(Naris);
for iSub = 1:length(fieldnames(Naris))
sess_list = fieldnames(Naris.(sub_list{iSub}));
for iSess = 1:length(sess_list);
site_list = fieldnames(Naris.(sub_list{iSub}).(sess_list{iSess}).(PARAMS.Phases{1}));
S1 = ceil(length(site_list)/2);
h.(['n' num2str(iSess)]) = figure((iSub)*10 + (iSess));
iSite_pot= 0; iSite_trk = 0;
for iSite = 1:length(site_list)
h_site.(['n' num2str(iSite)]) = figure((iSub)*100 + (iSess)*10 +(iSite));
for iPhase = 1:length(PARAMS.Phases)
hold on
plot(Naris.(sub_list{iSub}).(sess_list{iSess}).(PARAMS.Phases{iPhase}).(site_list{iSite}).psd.White_F,...
10*log10(Naris.(sub_list{iSub}).(sess_list{iSess}).(PARAMS.Phases{iPhase}).(site_list{iSite}).psd.White_Pxx),...
'color', c_ord(iPhase,:), 'linewidth', cfg.linewidth)
end
xlim([0 120])
xlabel('Frequency (Hz)')
ylabel('Power')
% title(strrep([sess_list{iSess} ' ' site_list{iSite}], '_', '-'))
%legend(PARAMS.Phases)
SetFigure([], h_site.(['n' num2str(iSite)]))
% %Square_subplots
saveas(h_site.(['n' num2str(iSite)]), [PARAMS.inter_dir sess_list{iSess} '_' site_list{iSite} '_white'], 'png')
saveas(h_site.(['n' num2str(iSite)]), [PARAMS.inter_dir sess_list{iSess} '_' site_list{iSite} '_white'], 'epsc')
close(h_site.(['n' num2str(iSite)]));
if strcmp(site_list{iSite}(end-2:end), 'trk')
h_all_trk= figure((iSub)*1000 + (iSess));
iSite_trk = iSite_trk+1;
subplot(3,3,iSite_trk)
else
h_all_pot = figure((iSub)*100 + (iSess));
iSite_pot = iSite_pot+1;
subplot(3,3,iSite_pot)
end
for iPhase = 1:length(PARAMS.Phases)
hold on
plot(Naris.(sub_list{iSub}).(sess_list{iSess}).(PARAMS.Phases{iPhase}).(site_list{iSite}).psd.White_F,...
10*log10(Naris.(sub_list{iSub}).(sess_list{iSess}).(PARAMS.Phases{iPhase}).(site_list{iSite}).psd.White_Pxx),...
'color', c_ord(iPhase,:), 'linewidth', cfg.linewidth)
end
xlim([0 120])
xlabel(site_list{iSite})
ylabel('Power')
%legend(PARAMS.Phases, 'location', 'SouthEast')
end
fig_pos = get(h_all_pot, 'position');
tightfig(h_all_pot)
set(h_all_pot, 'position', [fig_pos(1), fig_pos(2), 700, 700])
fig_pos = get(h_all_trk, 'position');
tightfig(h_all_trk)
set(h_all_trk, 'position', [fig_pos(1), fig_pos(2), 700, 700])
% SetFigure([], h_all)
if isunix
sum_dir = '/Summary/';
mkdir(PARAMS.inter_dir, sum_dir)
else
sum_dir = '\Summary\';
mkdir(PARAMS.inter_dir, sum_dir)
end
saveas(h_all_pot, [PARAMS.inter_dir sum_dir sess_list{iSess} '_all_white_pot'], 'png')
saveas(h_all_pot, [PARAMS.inter_dir sum_dir sess_list{iSess} '_all_white_pot'], 'epsc')
saveas(h_all_trk, [PARAMS.inter_dir sum_dir sess_list{iSess} '_all_white_trk'], 'png')
saveas(h_all_trk, [PARAMS.inter_dir sum_dir sess_list{iSess} '_all_white_trk'], 'epsc')
close all
end
end
end