peka/environment.yml at main · ulelab/peka · GitHub

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name: peka
channels:
  - anaconda
  - bioconda
  - conda-forge
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=2_gnu
  - bcrypt=4.1.1=py310hcb5633a_0
  - bedtools=2.31.1=hf5e1c6e_0
  - blas=1.0=openblas
  - bottleneck=1.3.7=py310h1f7b6fc_1
  - brotli=1.1.0=hd590300_1
  - brotli-bin=1.1.0=hd590300_1
  - bzip2=1.0.8=hd590300_5
  - c-ares=1.23.0=hd590300_0
  - ca-certificates=2023.11.17=hbcca054_0
  - certifi=2023.11.17=pyhd8ed1ab_0
  - cffi=1.16.0=py310h5eee18b_0
  - contourpy=1.2.0=py310hd41b1e2_0
  - cryptography=41.0.7=py310hb8475ec_1
  - cycler=0.12.1=pyhd8ed1ab_0
  - cyrus-sasl=2.1.28=h52b45da_1
  - dbus=1.13.18=hb2f20db_0
  - expat=2.5.0=hcb278e6_1
  - fontconfig=2.14.2=h14ed4e7_0
  - fonttools=4.46.0=py310h2372a71_0
  - freetype=2.12.1=h267a509_2
  - gettext=0.21.1=h27087fc_0
  - giflib=5.2.1=h5eee18b_3
  - glib=2.78.3=hfc55251_0
  - glib-tools=2.78.3=hfc55251_0
  - gst-plugins-base=1.14.1=h6a678d5_1
  - gstreamer=1.14.1=h5eee18b_1
  - icu=73.2=h59595ed_0
  - joblib=1.3.2=pyhd8ed1ab_0
  - jpeg=9e=h0b41bf4_3
  - kiwisolver=1.4.5=py310hd41b1e2_1
  - krb5=1.20.1=h143b758_1
  - lcms2=2.12=h3be6417_0
  - ld_impl_linux-64=2.40=h41732ed_0
  - libblas=3.9.0=20_linux64_openblas
  - libbrotlicommon=1.1.0=hd590300_1
  - libbrotlidec=1.1.0=hd590300_1
  - libbrotlienc=1.1.0=hd590300_1
  - libcblas=3.9.0=20_linux64_openblas
  - libclang=14.0.6=default_hc6dbbc7_1
  - libclang13=14.0.6=default_he11475f_1
  - libcups=2.4.2=h2d74bed_1
  - libcurl=8.4.0=h251f7ec_0
  - libdeflate=1.18=h0b41bf4_0
  - libedit=3.1.20221030=h5eee18b_0
  - libev=4.33=hd590300_2
  - libexpat=2.5.0=hcb278e6_1
  - libffi=3.4.4=h6a678d5_0
  - libgcc-ng=13.2.0=h807b86a_3
  - libgfortran-ng=13.2.0=h69a702a_3
  - libgfortran5=13.2.0=ha4646dd_3
  - libglib=2.78.3=h783c2da_0
  - libgomp=13.2.0=h807b86a_3
  - libiconv=1.17=hd590300_1
  - liblapack=3.9.0=20_linux64_openblas
  - libllvm14=14.0.6=hcd5def8_4
  - libnghttp2=1.58.0=h47da74e_1
  - libnsl=2.0.1=hd590300_0
  - libopenblas=0.3.25=pthreads_h413a1c8_0
  - libpng=1.6.39=h5eee18b_0
  - libpq=12.15=hdbd6064_1
  - libsodium=1.0.18=h36c2ea0_1
  - libsqlite=3.44.2=h2797004_0
  - libssh2=1.11.0=h0841786_0
  - libstdcxx-ng=13.2.0=h7e041cc_3
  - libtiff=4.2.0=hf544144_3
  - libuuid=2.38.1=h0b41bf4_0
  - libwebp=1.3.2=h11a3e52_0
  - libwebp-base=1.3.2=h5eee18b_0
  - libxcb=1.16=hd590300_0
  - libxkbcommon=1.0.3=he3ba5ed_0
  - libxml2=2.10.4=hf1b16e4_1
  - libzlib=1.2.13=hd590300_5
  - lz4-c=1.9.4=h6a678d5_0
  - matplotlib=3.8.2=py310hff52083_0
  - matplotlib-base=3.8.2=py310h62c0568_0
  - munkres=1.1.4=py_0
  - mysql=5.7.24=h721c034_2
  - ncurses=6.4=h59595ed_2
  - nomkl=1.0=h5ca1d4c_0
  - numexpr=2.8.7=py310hc2d3c2e_104
  - numpy=1.26.0=py310heeff2f4_0
  - numpy-base=1.26.0=py310h8a23956_0
  - openjpeg=2.4.0=hb52868f_1
  - openssl=3.2.0=hd590300_1
  - packaging=23.2=pyhd8ed1ab_0
  - pandas=2.1.4=py310hcc13569_0
  - paramiko=3.3.1=pyhd8ed1ab_0
  - patsy=0.5.4=pyhd8ed1ab_0
  - pcre=8.45=h295c915_0
  - pcre2=10.42=hcad00b1_0
  - pillow=10.0.1=py310ha6cbd5a_0
  - pip=23.3.1=pyhd8ed1ab_0
  - plumbum=1.8.2=pyhd8ed1ab_0
  - ply=3.11=py_1
  - pthread-stubs=0.4=h36c2ea0_1001
  - pybedtools=0.9.1=py310h2b6aa90_0
  - pycparser=2.21=pyhd3eb1b0_0
  - pynacl=1.5.0=py310h2372a71_3
  - pyparsing=3.1.1=pyhd8ed1ab_0
  - pyqt=5.15.10=py310h6a678d5_0
  - pyqt5-sip=12.13.0=py310h5eee18b_0
  - pysam=0.22.0=py310h41dec4a_0
  - python=3.10.13=hd12c33a_0_cpython
  - python-dateutil=2.8.2=pyhd3eb1b0_0
  - python-tzdata=2023.3=pyhd3eb1b0_0
  - python_abi=3.10=4_cp310
  - pytz=2023.3.post1=py310h06a4308_0
  - pywin32-on-windows=0.1.0=pyh1179c8e_3
  - qt-main=5.15.2=h53bd1ea_10
  - readline=8.2=h8228510_1
  - scikit-learn=1.3.2=py310h1fdf081_2
  - scipy=1.11.4=py310hb13e2d6_0
  - seaborn=0.13.0=hd8ed1ab_0
  - seaborn-base=0.13.0=pyhd8ed1ab_0
  - setuptools=68.2.2=pyhd8ed1ab_0
  - sip=6.7.12=py310h6a678d5_0
  - six=1.16.0=pyhd3eb1b0_1
  - sqlite=3.44.2=h2c6b66d_0
  - statsmodels=0.14.1=py310h1f7b6fc_0
  - textdistance=4.5.0=pyhd8ed1ab_0
  - threadpoolctl=3.2.0=pyha21a80b_0
  - tk=8.6.13=noxft_h4845f30_101
  - tomli=2.0.1=py310h06a4308_0
  - tornado=6.3.3=py310h2372a71_1
  - tzdata=2023c=h04d1e81_0
  - unicodedata2=15.1.0=py310h2372a71_0
  - wheel=0.42.0=pyhd8ed1ab_0
  - xorg-libxau=1.0.11=hd590300_0
  - xorg-libxdmcp=1.1.3=h7f98852_0
  - xz=5.4.2=h5eee18b_0
  - zlib=1.2.13=hd590300_5
  - zstd=1.5.5=hc292b87_0