ncawareclip/environment.yml at main · ulelab/ncawareclip · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
name: ncawareclip
channels:
  - conda-forge
  - anaconda
  - bioconda
  - r
  - bcbio
  - defaults
dependencies:
  - _libgcc_mutex=0.1=main
  - _openmp_mutex=4.5=1_gnu
  - _r-mutex=1.0.0=anacondar_1
  - bcrypt=3.2.0=py36h7b6447c_0
  - bedtools=2.30.0=h7d7f7ad_1
  - binutils_linux-64=2.28.1=he4fe6c7_1
  - bioconductor-biocgenerics=0.18.0=r3.2.2_0
  - bioconductor-genomeinfodb=1.6.3=0
  - bioconductor-genomicranges=1.22.4=0
  - bioconductor-iranges=2.4.8=0
  - bioconductor-s4vectors=0.8.11=0
  - bioconductor-xvector=0.8.0=0
  - blas=1.0=mkl
  - bowtie=1.2.0=py36_0
  - brotlipy=0.7.0=py36h27cfd23_1003
  - bz2file=0.98=py36h06a4308_1
  - bzip2=1.0.8=h7b6447c_0
  - ca-certificates=2020.10.14=0
  - cairo=1.14.12=h8948797_3
  - certifi=2020.6.20=py36_0
  - cffi=1.14.0=py36h2e261b9_0
  - charset-normalizer=2.0.4=pyhd3eb1b0_0
  - cryptography=35.0.0=py36hd23ed53_0
  - curl=7.69.1=hbc83047_0
  - cutadapt=2.6=py36h516909a_0
  - dnaio=0.3=py36h14c3975_1
  - docutils=0.17.1=py36h06a4308_1
  - dropbox=5.2.1=py36_0
  - fastqc=0.11.9=hdfd78af_1
  - filechunkio=1.6=py36_0
  - font-ttf-dejavu-sans-mono=2.37=hd3eb1b0_0
  - fontconfig=2.13.1=h6c09931_0
  - freetype=2.11.0=h70c0345_0
  - fribidi=1.0.10=h7b6447c_0
  - ftputil=3.2=py36_0
  - gcc_linux-64=7.2.0=hc7b1ceb_1
  - glib=2.63.1=h5a9c865_0
  - graphite2=1.3.14=h23475e2_0
  - harfbuzz=1.8.8=hffaf4a1_0
  - htslib=1.9=ha228f0b_7
  - icu=58.2=he6710b0_3
  - idna=3.3=pyhd3eb1b0_0
  - intel-openmp=2021.4.0=h06a4308_3561
  - jpeg=9d=h7f8727e_0
  - krb5=1.17.1=h173b8e3_0
  - ld_impl_linux-64=2.35.1=h7274673_9
  - libcurl=7.69.1=h20c2e04_0
  - libdeflate=1.0=h14c3975_1
  - libedit=3.1.20181209=hc058e9b_0
  - libffi=3.2.1=hf484d3e_1007
  - libgcc=7.2.0=h69d50b8_2
  - libgcc-ng=9.3.0=h5101ec6_17
  - libgfortran-ng=7.5.0=ha8ba4b0_17
  - libgfortran4=7.5.0=ha8ba4b0_17
  - libgomp=9.3.0=h5101ec6_17
  - libpng=1.6.37=hbc83047_0
  - libsodium=1.0.18=h7b6447c_0
  - libssh2=1.9.0=h1ba5d50_1
  - libstdcxx-ng=9.3.0=hd4cf53a_17
  - libtiff=4.2.0=h85742a9_0
  - libuuid=1.0.3=h7f8727e_2
  - libwebp-base=1.2.0=h27cfd23_0
  - libxcb=1.14=h7b6447c_0
  - libxml2=2.9.12=h03d6c58_0
  - lz4-c=1.9.3=h295c915_1
  - mkl=2019.4=243
  - mkl-service=2.3.0=py36he8ac12f_0
  - mkl_fft=1.0.14=py36hd81dba3_0
  - mkl_random=1.0.4=py36hd81dba3_0
  - ncurses=6.1=he6710b0_1
  - numpy=1.17.0=py36h7e9f1db_0
  - numpy-base=1.17.0=py36hde5b4d6_0
  - openjdk=8.0.152=h7b6447c_3
  - openssl=1.1.1m=h7f8727e_0
  - pandas=1.1.5=py36ha9443f7_0
  - pango=1.42.4=h049681c_0
  - paramiko=2.8.1=pyhd3eb1b0_0
  - pcre=8.45=h295c915_0
  - perl=5.26.2=h14c3975_0
  - perl-threaded=5.32.1=hdfd78af_1
  - pigz=2.6=h27cfd23_0
  - pip=21.2.2=py36h06a4308_0
  - pixman=0.40.0=h7f8727e_1
  - psutil=5.8.0=py36h27cfd23_1
  - pycparser=2.21=pyhd3eb1b0_0
  - pynacl=1.4.0=py36h7b6447c_1
  - pyopenssl=21.0.0=pyhd3eb1b0_1
  - pysam=0.15.3=py36hda2845c_1
  - pysftp=0.2.9=py36_0
  - pysocks=1.7.1=py36h06a4308_0
  - python=3.6.10=h0371630_0
  - python-dateutil=2.8.2=pyhd3eb1b0_0
  - pytz=2021.3=pyhd3eb1b0_0
  - pyyaml=5.4.1=py36h27cfd23_1
  - r=3.2.2=0
  - r-assertthat=0.1=r3.2.2_1a
  - r-base=3.2.2=0
  - r-bh=1.60.0_2=r3.2.2_0
  - r-boot=1.3_17=r3.2.2_0a
  - r-chron=2.3_47=r3.2.2_0a
  - r-class=7.3_14=r3.2.2_0a
  - r-cluster=2.0.3=r3.2.2_0a
  - r-codetools=0.2_14=r3.2.2_0a
  - r-colorspace=1.2_6=r3.2.2_0a
  - r-data.table=1.9.6=r3.2.2_0a
  - r-dbi=0.3.1=r3.2.2_2a
  - r-dichromat=2.0_0=r3.2.2_2a
  - r-digest=0.6.9=r3.2.2_0
  - r-dplyr=0.4.3=r3.2.2_0a
  - r-foreign=0.8_66=r3.2.2_0a
  - r-ggplot2=2.1.0=r3.2.2_0
  - r-gtable=0.1.2=r3.2.2_2a
  - r-kernsmooth=2.23_15=r3.2.2_0a
  - r-labeling=0.3=r3.2.2_1a
  - r-lattice=0.20_33=r3.2.2_0a
  - r-lazyeval=0.1.10=r3.2.2_2a
  - r-magrittr=1.5=r3.2.2_0
  - r-mass=7.3_45=r3.2.2_0a
  - r-matrix=1.2_2=r3.2.2_0a
  - r-mgcv=1.8_9=r3.2.2_0a
  - r-munsell=0.4.2=r3.2.2_1a
  - r-nlme=3.1_122=r3.2.2_0a
  - r-nnet=7.3_11=r3.2.2_0a
  - r-plyr=1.8.3=r3.2.2_0a
  - r-r6=2.1.1=r3.2.2_0a
  - r-rcolorbrewer=1.1_2=r3.2.2_2a
  - r-rcpp=0.12.2=r3.2.2_0a
  - r-recommended=3.2.2=r3.2.2_0
  - r-reshape2=1.4.1=r3.2.2_1a
  - r-rpart=4.1_10=r3.2.2_0a
  - r-scales=0.3.0=r3.2.2_0a
  - r-spatial=7.3_11=r3.2.2_0a
  - r-stringi=1.0_1=r3.2.2_0a
  - r-stringr=1.0.0=r3.2.2_0a
  - r-survival=2.38_3=r3.2.2_0a
  - readline=7.0=h7b6447c_5
  - requests=2.27.1=pyhd3eb1b0_0
  - sambamba=0.6.6=2
  - samtools=1.9=h10a08f8_12
  - setuptools=58.0.4=py36h06a4308_0
  - six=1.16.0=pyhd3eb1b0_0
  - snakemake=3.13.3=py36_0
  - sqlite=3.31.1=h7b6447c_0
  - star=2.7.10a=h9ee0642_0
  - tbb=2020.2=h4bd325d_4
  - tk=8.6.11=h1ccaba5_0
  - trim-galore=0.6.7=hdfd78af_0
  - urllib3=1.26.7=pyhd3eb1b0_0
  - wheel=0.37.1=pyhd3eb1b0_0
  - wrapt=1.12.1=py36h7b6447c_1
  - xopen=0.7.3=py_0
  - xz=5.2.5=h7b6447c_0
  - yaml=0.2.5=h7b6447c_0
  - zlib=1.2.11=h7f8727e_4
  - zstd=1.4.9=haebb681_0