diff --git a/.github/workflows/docs.yaml b/.github/workflows/docs.yaml index d4081f1..ec358dc 100644 --- a/.github/workflows/docs.yaml +++ b/.github/workflows/docs.yaml @@ -13,10 +13,10 @@ jobs: - uses: actions/checkout@v2 with: ref: ${{ github.head_ref }} - - name: Set up Python 3.9 + - name: Set up Python 3.13 uses: actions/setup-python@v1 with: - python-version: 3.9 + python-version: 3.13 - uses: actions/cache@preview with: path: ~/.cache/pypoetry/virtualenvs diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml index 4a15a16..4186054 100644 --- a/.github/workflows/tests.yaml +++ b/.github/workflows/tests.yaml @@ -18,10 +18,10 @@ jobs: options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5 steps: - uses: actions/checkout@v1 - - name: Set up Python 3.9 + - name: Set up Python 3.13 uses: actions/setup-python@v1 with: - python-version: 3.9 + python-version: 3.13 - uses: actions/cache@preview with: path: ~/.cache/pypoetry/virtualenvs diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 57563dd..d401463 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,6 +1,6 @@ repos: - repo: git@github.com:Yelp/detect-secrets - rev: v1.2.0 + rev: v1.5.0 hooks: - id: detect-secrets args: ['--baseline', '.secrets.baseline'] diff --git a/.secrets.baseline b/.secrets.baseline index 7a2c1cc..10778b0 100644 --- a/.secrets.baseline +++ b/.secrets.baseline @@ -1,5 +1,5 @@ { - "version": "1.2.0", + "version": "1.5.0", "plugins_used": [ { "name": "ArtifactoryDetector" @@ -118,24 +118,24 @@ "line_number": 26 } ], - "tests/test-requestor-config.yaml": [ + "tests/migrations/test_migration_42cbae986650.py": [ { - "type": "Secret Keyword", - "filename": "tests/test-requestor-config.yaml", - "hashed_secret": "afc848c316af1a89d49826c5ae9d00ed769415f3", + "type": "Hex High Entropy String", + "filename": "tests/migrations/test_migration_42cbae986650.py", + "hashed_secret": "4fad492cfee1c1b0f14750167ec26646f69c0c6f", "is_verified": false, - "line_number": 18 + "line_number": 57 } ], - "tests/test_migrations.py": [ + "tests/test-requestor-config.yaml": [ { - "type": "Hex High Entropy String", - "filename": "tests/test_migrations.py", - "hashed_secret": "4fad492cfee1c1b0f14750167ec26646f69c0c6f", + "type": "Secret Keyword", + "filename": "tests/test-requestor-config.yaml", + "hashed_secret": "afc848c316af1a89d49826c5ae9d00ed769415f3", "is_verified": false, - "line_number": 43 + "line_number": 17 } ] }, - "generated_at": "2024-09-04T17:19:26Z" + "generated_at": "2025-12-19T22:34:07Z" } diff --git a/Dockerfile b/Dockerfile index 7a3a225..b268133 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,6 +1,6 @@ -ARG AZLINUX_BASE_VERSION=master +ARG AZLINUX_BASE_VERSION=3.13-pythonnginx -FROM quay.io/cdis/python-nginx-al:feat_python-nginx AS base +FROM quay.io/cdis/amazonlinux-base:${AZLINUX_BASE_VERSION} AS base ENV appname=requestor @@ -30,6 +30,7 @@ RUN poetry install --no-interaction --without dev FROM base COPY --from=builder /${appname} /${appname} +COPY --from=builder /venv /venv # Switch to non-root user 'gen3' for the serving process USER gen3 diff --git a/docs/local_installation.md b/docs/local_installation.md index de2785c..978c306 100644 --- a/docs/local_installation.md +++ b/docs/local_installation.md @@ -5,7 +5,7 @@ Install required software: * [PostgreSQL](PostgreSQL) 9.6 or above -* [Python](https://www.python.org/downloads/) 3.9.x +* [Python](https://www.python.org/downloads/) 3.13.x * [Poetry](https://poetry.eustace.io/docs/#installation) Then use `poetry install` to install the dependencies. Before that, diff --git a/docs/openapi.yaml b/docs/openapi.yaml index b2efe59..396581a 100644 --- a/docs/openapi.yaml +++ b/docs/openapi.yaml @@ -92,7 +92,7 @@ components: type: http info: title: Requestor - version: 1.7.1 + version: 2.0.0 openapi: 3.1.0 paths: /_status: @@ -103,6 +103,7 @@ paths: content: application/json: schema: + additionalProperties: true title: Response Get Status Status Get type: object description: Successful Response @@ -117,6 +118,7 @@ paths: content: application/json: schema: + additionalProperties: true title: Response Get Version Version Get type: object description: Successful Response @@ -195,6 +197,7 @@ paths: content: application/json: schema: + additionalProperties: true title: Response Create Request Request Post type: object description: Successful Response @@ -279,6 +282,7 @@ paths: content: application/json: schema: + additionalProperties: true title: Response Check User Resource Paths Request User Resource Paths Post type: object @@ -299,8 +303,8 @@ paths: description: 'Delete an access request. - /!\ Note that deleting an access request that has already been approved does - NOT revoke the access + WARNING: deleting an access request that has already been approved does NOT + revoke the access that has been granted. It only removes the trace of that access request from the database.' @@ -318,6 +322,7 @@ paths: content: application/json: schema: + additionalProperties: true title: Response Delete Request Request Request Id Delete type: object description: Successful Response @@ -347,6 +352,7 @@ paths: content: application/json: schema: + additionalProperties: true title: Response Get Request Request Request Id Get type: object description: Successful Response @@ -383,6 +389,7 @@ paths: content: application/json: schema: + additionalProperties: true title: Response Update Request Request Request Id Put type: object description: Successful Response diff --git a/migrations/env.py b/migrations/env.py index b0ebcf2..9e978fe 100644 --- a/migrations/env.py +++ b/migrations/env.py @@ -1,19 +1,25 @@ -from alembic import context from logging.config import fileConfig -from sqlalchemy import engine_from_config, pool -from requestor.config import config -from requestor.app import db, load_modules +from alembic import context +import asyncio +from sqlalchemy import pool +from sqlalchemy.engine import Connection +from sqlalchemy.ext.asyncio import async_engine_from_config + +from requestor.app import load_modules +from requestor.config import config as requestor_config +from requestor.db import Base -conf = context.config -fileConfig(conf.config_file_name) +config = context.config +if config.config_file_name is not None: + fileConfig(config.config_file_name) +config.set_main_option("sqlalchemy.url", requestor_config["DB_URL"]) load_modules() -target_metadata = db -conf.set_main_option("sqlalchemy.url", str(config["DB_URL"])) +target_metadata = Base.metadata -def run_migrations_offline(): +def run_migrations_offline() -> None: """Run migrations in 'offline' mode. This configures the context with just a URL @@ -25,7 +31,7 @@ def run_migrations_offline(): script output. """ - url = conf.get_main_option("sqlalchemy.url") + url = config.get_main_option("sqlalchemy.url") context.configure( url=url, target_metadata=target_metadata, @@ -37,24 +43,36 @@ def run_migrations_offline(): context.run_migrations() -def run_migrations_online(): - """Run migrations in 'online' mode. +def do_run_migrations(connection: Connection) -> None: + context.configure(connection=connection, target_metadata=target_metadata) + + with context.begin_transaction(): + context.run_migrations() - In this scenario we need to create an Engine - and associate a connection with the context. +async def run_async_migrations() -> None: + """In this scenario we need to create an Engine + and associate a connection with the context. """ - connectable = engine_from_config( - conf.get_section(conf.config_ini_section), + connectable = async_engine_from_config( + config.get_section(config.config_ini_section, {}), prefix="sqlalchemy.", poolclass=pool.NullPool, ) - with connectable.connect() as connection: - context.configure(connection=connection, target_metadata=target_metadata) + async with connectable.connect() as connection: + await connection.run_sync(do_run_migrations) + + await connectable.dispose() + - with context.begin_transaction(): - context.run_migrations() +def run_migrations_online() -> None: + """Run migrations in 'online' mode.""" + connectable = context.config.attributes.get("connection", None) + if connectable is None: + asyncio.run(run_async_migrations()) + else: + do_run_migrations(connectable) # to support running migrations in unit tests if context.is_offline_mode(): diff --git a/migrations/versions/42cbae986650_policy_id_and_revoke.py b/migrations/versions/42cbae986650_policy_id_and_revoke.py index 5421087..9aefe7d 100644 --- a/migrations/versions/42cbae986650_policy_id_and_revoke.py +++ b/migrations/versions/42cbae986650_policy_id_and_revoke.py @@ -61,7 +61,7 @@ def upgrade(): offset = 0 limit = 500 query = f"SELECT resource_path FROM requests ORDER by resource_path LIMIT {limit} OFFSET {offset}" - results = connection.execute(query).fetchall() + results = connection.execute(sa.text(query)).fetchall() # add the `policy_id` corresponding to each row's `resource_path` # and default `revoke` to False @@ -78,13 +78,15 @@ def upgrade(): ) existing_policies["policies"].append(created_policy_id) connection.execute( - f"UPDATE requests SET policy_id='{escape(policy_id)}', revoke=False WHERE resource_path='{escape(resource_path)}'" + sa.text( + f"UPDATE requests SET policy_id='{escape(policy_id)}', revoke=False WHERE resource_path='{escape(resource_path)}'" + ) ) # Grab another batch of rows offset += limit query = f"SELECT resource_path FROM requests ORDER by resource_path LIMIT {limit} OFFSET {offset}" - results = connection.execute(query).fetchall() + results = connection.execute(sa.text(query)).fetchall() # now that there are no null values, make the columns non-nullable op.alter_column("requests", "policy_id", nullable=False) @@ -107,7 +109,7 @@ def downgrade(): offset = 0 limit = 500 query = f"SELECT policy_id FROM requests ORDER by policy_id LIMIT {limit} OFFSET {offset}" - results = connection.execute(query).fetchall() + results = connection.execute(sa.text(query)).fetchall() while results: for policy_id in set(r[0] for r in results): @@ -124,13 +126,15 @@ def downgrade(): # use the first item in the policy’s list of resources, because this # schema only allows 1 resource_path connection.execute( - f"UPDATE requests SET resource_path='{escape(resource_paths[0])}' WHERE policy_id='{escape(policy_id)}'" + sa.text( + f"UPDATE requests SET resource_path='{escape(resource_paths[0])}' WHERE policy_id='{escape(policy_id)}'" + ) ) # get another batch of rows offset += limit query = f"SELECT policy_id FROM requests ORDER by policy_id LIMIT {limit} OFFSET {offset}" - results = connection.execute(query).fetchall() + results = connection.execute(sa.text(query)).fetchall() # now that there are no null values, make the column non-nullable op.alter_column("requests", "resource_path", nullable=False) diff --git a/poetry.lock b/poetry.lock index 20912a7..ee2355f 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,161 +1,159 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. +# This file is automatically @generated by Poetry 2.2.1 and should not be changed by hand. 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"7637376d7d64b80c064f73ece8ff2967e462c1c9e08aa4422e72da31a7d50b67" +lock-version = "2.1" +python-versions = ">=3.13,<4" +content-hash = "d2c2dee8c8f276f0826e5077d56476189b5181f02f1c1d1a3b5e27211120d134" diff --git a/pyproject.toml b/pyproject.toml index 64c827e..d59c5ca 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "requestor" -version = "1.7.1" +version = "2.0.0" description = "Gen3 Access Request Service" authors = ["CTDS UChicago "] license = "Apache-2.0" @@ -11,36 +11,47 @@ include = [ ] [tool.poetry.dependencies] -python = "^3.9" -alembic = "^1.4.2" -authutils = "^6.2.1" -cdislogging = "^1.0.0" +python = ">=3.13,<4" +alembic = ">=1" +authutils = ">=6.2.1" +cdislogging = ">=1.0.0" fastapi = "<1" -gen3authz = "^2.1.0" -gen3config = "^1.0.0" +gen3authz = ">=2.1.0" +gen3config = ">=1.0.0" httpx = ">=0.20.0,<1.0.0" -jsonschema = "^4.6.0" -psycopg2-binary = "^2.8.5" -pydantic = "^1.8.2" -python-multipart = "^0.0.9" -requests = "^2.32.0" -sniffio = "^1.2.0" +jsonschema = ">=4.6.0" +psycopg2-binary = ">=2.8.5" +pydantic = ">=1.8.2" +requests = ">=2.32.0" +sniffio = ">=1.2.0" uvicorn = ">=0.11.8,<1.0.0" -gino = {version = "^1.0.1", extras = ["starlette"]} -importlib-metadata = {version = "^1.7.0", python = "<3.8"} -gunicorn = "^22.0.0" +gunicorn = ">=22.0.0" +sqlalchemy = { extras = ["asyncio"], version = ">=2" } +pyyaml = ">=6" +starlette = ">=0.50" +asyncpg = "*" -[tool.poetry.dev-dependencies] -mock = "^4.0.3" -pytest = "^6.0.1" -pytest-asyncio = "^0.16.0" -pytest-cov = "^2.8" +[tool.poetry.group.dev.dependencies] +mock = ">=4.0.3" +pytest = ">=9" +pytest-asyncio = "*" +pytest-cov = ">=2.8" +deptry = ">=0.24.0" [tool.poetry.plugins."requestor.modules"] "system" = "requestor.routes.system" "manage" = "requestor.routes.manage" "query" = "requestor.routes.query" +[tool.deptry] +known_first_party = ["requestor"] + +[tool.deptry.per_rule_ignores] +DEP002 = [ + "gunicorn", # not imported but used in Dockerfile + "psycopg2-binary", # not imported but used by sqlalchemy +] + [build-system] requires = ["poetry>=1.0.0"] build-backend = "poetry.masonry.api" diff --git a/src/requestor/app.py b/src/requestor/app.py index e510d5e..e66a5ab 100644 --- a/src/requestor/app.py +++ b/src/requestor/app.py @@ -1,37 +1,20 @@ -import asyncio -from fastapi import FastAPI -from fastapi.routing import APIRoute -import httpx +from contextlib import asynccontextmanager from importlib.metadata import entry_points, version import os +import asyncio from cdislogging import get_logger +from fastapi import FastAPI from gen3authz.client.arborist.async_client import ArboristClient +import httpx from . import logger -from .config import config, DEFAULT_CFG_PATH - -# Load the configuration *before* importing models -try: - if os.environ.get("REQUESTOR_CONFIG_PATH"): - config.load(config_path=os.environ["REQUESTOR_CONFIG_PATH"]) - else: - CONFIG_SEARCH_FOLDERS = [ - "/src", - "{}/.gen3/requestor".format(os.path.expanduser("~")), - ] - config.load(search_folders=CONFIG_SEARCH_FOLDERS) -except Exception: - logger.warning("Unable to load config, using default config...", exc_info=True) - config.load(config_path=DEFAULT_CFG_PATH) - -from .models import db +from .config import config +from .db import initialize_db def load_modules(app: FastAPI = None) -> None: - # FIXME: Identify the cause for duplicate entry points (PXP-8443) - # Added a set on entry points to dodge the intermittent duplicate modules issue - for ep in set(entry_points()["requestor.modules"]): + for ep in entry_points(group="requestor.modules"): logger.info(f"Loading module: {ep.name}") mod = ep.load() if app: @@ -50,6 +33,7 @@ def app_init() -> FastAPI: version=version("requestor"), debug=debug, root_path=config["DOCS_URL_PREFIX"], + lifespan=lifespan, ) app.add_middleware(ClientDisconnectMiddleware) app.async_client = httpx.AsyncClient() @@ -71,17 +55,28 @@ def app_init() -> FastAPI: logger=get_logger("requestor.gen3authz", log_level="debug"), ) - db.init_app(app) load_modules(app) - @app.on_event("shutdown") - async def shutdown_event(): - logger.info("Closing async client.") - await app.async_client.aclose() - return app +@asynccontextmanager +async def lifespan(app: FastAPI): + """ + This is FastAPI's way of dealing with startup logic before the app + starts receiving requests. + https://fastapi.tiangolo.com/advanced/events/#lifespan + """ + # startup + initialize_db() + + yield + + # teardown + logger.debug("Closing async client") + await app.async_client.aclose() + + class ClientDisconnectMiddleware: def __init__(self, app): self._app = app diff --git a/src/requestor/arborist.py b/src/requestor/arborist.py index dfe0968..e0852f0 100644 --- a/src/requestor/arborist.py +++ b/src/requestor/arborist.py @@ -5,7 +5,6 @@ from functools import wraps import inspect -import sniffio from gen3authz.client.arborist.async_client import ArboristClient from gen3authz.client.arborist.errors import ArboristError @@ -22,12 +21,18 @@ def maybe_sync(m): @wraps(m) def _wrapper(*args, **kwargs): - coro = m(*args, **kwargs) try: - sniffio.current_async_library() - except sniffio.AsyncLibraryNotFoundError: - pass - else: + from alembic import context + + # If this import succeeds and the context has a config, we are likely in a migration. + # Accessing an attribute like 'config' on the context will raise an error if it hasn't + # been set up by the EnvironmentContext. + is_alembic_migration = bool(context.config) + except Exception: + is_alembic_migration = False + + coro = m(*args, **kwargs) + if not is_alembic_migration: return coro result = None @@ -190,7 +195,7 @@ async def create_arborist_policy( await res except ArboristError as e: logger.info( - "An error occured while updating role - '{}', '{}'".format( + "An error occured while updating role '{}': '{}'".format( {role["id"]}, str(e) ) ) diff --git a/src/requestor/config-default.yaml b/src/requestor/config-default.yaml index 6f93ca0..d6a604b 100644 --- a/src/requestor/config-default.yaml +++ b/src/requestor/config-default.yaml @@ -3,7 +3,6 @@ #################### DEBUG: true -TEST_KEEP_DB: false DOCS_URL_PREFIX: /requestor # ignored if already set as an environment variable @@ -13,20 +12,17 @@ ARBORIST_URL: # DATABASE # #################### -DB_DRIVER: postgresql +DB_DRIVER: postgresql+asyncpg DB_HOST: DB_PORT: DB_USER: DB_PASSWORD: -DB_DATABASE: requestor +DB_DATABASE: requestor_test DB_POOL_MIN_SIZE: 1 DB_POOL_MAX_SIZE: 16 DB_ECHO: False DB_SSL: -DB_USE_CONNECTION_FOR_REQUEST: true -DB_RETRY_LIMIT: 1 -DB_RETRY_INTERVAL: 1 # set to true to disable requests to Arborist during database migrations; # useful when migrating a local database or running unit tests diff --git a/src/requestor/config.py b/src/requestor/config.py index 81a420d..7d7bda6 100644 --- a/src/requestor/config.py +++ b/src/requestor/config.py @@ -1,12 +1,13 @@ from itertools import chain from jsonschema import validate import os -from sqlalchemy.engine.url import make_url, URL from gen3config import Config +from sqlalchemy.engine.url import URL from . import logger + DEFAULT_CFG_PATH = os.path.join( os.path.dirname(os.path.abspath(__file__)), "config-default.yaml" ) @@ -20,16 +21,14 @@ def __init__(self, *args, **kwargs): def post_process(self) -> None: # generate DB_URL from DB configs or env vars - self["DB_URL"] = make_url( - URL( - drivername=os.environ.get("DB_DRIVER", self["DB_DRIVER"]), - host=os.environ.get("DB_HOST", self["DB_HOST"]), - port=os.environ.get("DB_PORT", self["DB_PORT"]), - username=os.environ.get("DB_USER", self["DB_USER"]), - password=os.environ.get("DB_PASSWORD", self["DB_PASSWORD"]), - database=os.environ.get("DB_DATABASE", self["DB_DATABASE"]), - ), - ) + self["DB_URL"] = URL.create( + os.environ.get("DB_DRIVER", self["DB_DRIVER"]), + host=os.environ.get("DB_HOST", self["DB_HOST"]), + port=os.environ.get("DB_PORT", self["DB_PORT"]), + username=os.environ.get("DB_USER", self["DB_USER"]), + password=os.environ.get("DB_PASSWORD", self["DB_PASSWORD"]), + database=os.environ.get("DB_DATABASE", self["DB_DATABASE"]), + ).render_as_string(hide_password=False) def validate(self) -> None: """ @@ -37,7 +36,7 @@ def validate(self) -> None: """ logger.info("Validating configuration") - from .models import Request as RequestModel + from .db import Request as RequestModel self.allowed_params_from_db = [ column.key for column in RequestModel.__table__.columns @@ -237,3 +236,15 @@ def validate_credentials(self): config = RequestorConfig(DEFAULT_CFG_PATH) +try: + if os.environ.get("REQUESTOR_CONFIG_PATH"): + config.load(config_path=os.environ["REQUESTOR_CONFIG_PATH"]) + else: + CONFIG_SEARCH_FOLDERS = [ + "/src", + "{}/.gen3/requestor".format(os.path.expanduser("~")), + ] + config.load(search_folders=CONFIG_SEARCH_FOLDERS) +except Exception: + logger.warning("Unable to load config, using default config...", exc_info=True) + config.load(config_path=DEFAULT_CFG_PATH) diff --git a/src/requestor/db.py b/src/requestor/db.py new file mode 100644 index 0000000..ccc663b --- /dev/null +++ b/src/requestor/db.py @@ -0,0 +1,102 @@ +from collections.abc import AsyncIterable +from datetime import datetime, timezone + +from sqlalchemy import Column, DateTime, String +from sqlalchemy.dialects.postgresql import UUID +from sqlalchemy.ext.asyncio import ( + AsyncEngine, + AsyncSession, + async_sessionmaker, + create_async_engine, +) +from sqlalchemy.orm import declarative_base +from sqlalchemy.sql.sqltypes import Boolean + +from .config import config + + +Base = declarative_base() + + +engine = None +async_sessionmaker_instance = None + + +class Request(Base): + class Config: + # Fix for error: `no validator found for , + # see `arbitrary_types_allowed` in Config` + arbitrary_types_allowed = True + + __tablename__ = "requests" + + request_id = Column(UUID, primary_key=True) + username = Column(String, nullable=False) + policy_id = Column(String, nullable=False) + revoke = Column(Boolean, default=False, nullable=False) + status = Column(String, nullable=False) + created_time = Column( + DateTime(timezone=True), + default=lambda: datetime.now(timezone.utc), + nullable=False, + ) + updated_time = Column( + DateTime(timezone=True), + default=lambda: datetime.now(timezone.utc), + nullable=False, + ) + + # keep for backwards compatibility: + resource_id = Column(String) + resource_display_name = Column(String) + + def to_dict(self): + d = { + column.name: getattr(self, column.name) for column in self.__table__.columns + } + if hasattr(self, "redirect_url"): + d["redirect_url"] = self.redirect_url + return d + + +def initialize_db() -> None: + """ + Initialize the database enigne. + """ + global engine, async_sessionmaker_instance + engine = create_async_engine( + url=config["DB_URL"], + pool_size=config.get("DB_POOL_MIN_SIZE", 15), + max_overflow=config["DB_POOL_MAX_SIZE"] - config["DB_POOL_MIN_SIZE"], + echo=config["DB_ECHO"], + connect_args={"ssl": config["DB_SSL"]} if config["DB_SSL"] else {}, + pool_pre_ping=True, + ) + + # creates AsyncSession instances + async_sessionmaker_instance = async_sessionmaker( + bind=engine, expire_on_commit=False + ) + + +def get_db_engine_and_sessionmaker() -> tuple[AsyncEngine, async_sessionmaker]: + """ + Get the db engine and sessionmaker instances. + """ + global engine, async_sessionmaker_instance + if engine is None or async_sessionmaker_instance is None: + raise Exception("Database not initialized. Call initialize_db() first.") + return engine, async_sessionmaker_instance + + +async def get_db_session() -> AsyncIterable[AsyncSession]: + """ + Create an AsyncSession and yield an instance of the Data Access Layer, + which acts as an abstract interface to manipulate the database. + + Can be injected as a dependency in FastAPI endpoints. + """ + _, async_sessionmaker_instance = get_db_engine_and_sessionmaker() + async with async_sessionmaker_instance() as session: + async with session.begin(): + yield session diff --git a/src/requestor/models.py b/src/requestor/models.py deleted file mode 100644 index 65562dd..0000000 --- a/src/requestor/models.py +++ /dev/null @@ -1,34 +0,0 @@ -from datetime import datetime -from gino.ext.starlette import Gino -from sqlalchemy import Column, DateTime, String -from sqlalchemy.dialects.postgresql import UUID -from sqlalchemy.sql.sqltypes import Boolean - -from .config import config - -db = Gino( - dsn=config["DB_URL"], - pool_min_size=config["DB_POOL_MIN_SIZE"], - pool_max_size=config["DB_POOL_MAX_SIZE"], - echo=config["DB_ECHO"], - ssl=config["DB_SSL"], - use_connection_for_request=config["DB_USE_CONNECTION_FOR_REQUEST"], - retry_limit=config["DB_RETRY_LIMIT"], - retry_interval=config["DB_RETRY_INTERVAL"], -) - - -class Request(db.Model): - __tablename__ = "requests" - - request_id = Column(UUID, primary_key=True) - username = Column(String, nullable=False) - policy_id = Column(String, nullable=False) - revoke = Column(Boolean, default=False, nullable=False) - status = Column(String, nullable=False) - created_time = Column(DateTime, default=datetime.utcnow, nullable=False) - updated_time = Column(DateTime, default=datetime.utcnow, nullable=False) - - # keep for backwards compatibility: - resource_id = Column(String) - resource_display_name = Column(String) diff --git a/src/requestor/request_utils.py b/src/requestor/request_utils.py index 7049aa2..4638eb7 100644 --- a/src/requestor/request_utils.py +++ b/src/requestor/request_utils.py @@ -65,7 +65,7 @@ def get_redirect_url(action_id: str, data: dict) -> str: redirect_url = conf["redirect_url"] base_query_params = parse_qsl(urlparse(redirect_url).query, keep_blank_values=True) redirect_query_params = [ - (key, str(data[key])) for key in conf.get("params", []) if data.get(key) + (key, data[key]) for key in conf.get("params", []) if data.get(key) ] final_query_params = urlencode(base_query_params + redirect_query_params) final_redirect_url = redirect_url.split("?")[0] + "?" + final_query_params diff --git a/src/requestor/routes/manage.py b/src/requestor/routes/manage.py index 6dcfeed..ae84391 100644 --- a/src/requestor/routes/manage.py +++ b/src/requestor/routes/manage.py @@ -1,14 +1,17 @@ import uuid -from asyncpg.exceptions import UniqueViolationError -from datetime import datetime +from datetime import datetime, timezone from fastapi import APIRouter, Body, Depends, FastAPI, HTTPException from pydantic import BaseModel +from sqlalchemy import delete, insert, select +from sqlalchemy.exc import IntegrityError +from sqlalchemy.ext.asyncio.session import AsyncSession from starlette.requests import Request from starlette.status import ( HTTP_200_OK, HTTP_201_CREATED, HTTP_400_BAD_REQUEST, + HTTP_404_NOT_FOUND, HTTP_409_CONFLICT, HTTP_500_INTERNAL_SERVER_ERROR, ) @@ -17,7 +20,7 @@ from .. import logger, arborist from ..auth import Auth from ..config import config -from ..models import db, Request as RequestModel +from ..db import Request as RequestModel, get_db_session from ..request_utils import post_status_update @@ -67,6 +70,7 @@ async def create_request( api_request: Request, body: CreateRequestInput, auth=Depends(Auth), + db_session: AsyncSession = Depends(get_db_session), ) -> dict: """ Create a new access request. @@ -191,24 +195,23 @@ async def create_request( # get requests for this (username, policy_id) for which the status is # not in FINAL_STATUSES. users can only request access to a resource once. - previous_requests = [ - r - for r in ( - await RequestModel.query.where( - RequestModel.username == data["username"], - ) - .where( - RequestModel.policy_id == data["policy_id"], - ) - .where( - RequestModel.revoke == data.get("revoke", False), - ) - .where( - RequestModel.status.notin_(config["FINAL_STATUSES"]), - ) - .gino.all() + query = ( + select(RequestModel) + .where( + RequestModel.username == data["username"], ) - ] + .where( + RequestModel.policy_id == data["policy_id"], + ) + .where( + RequestModel.revoke == data.get("revoke", False), + ) + .where( + RequestModel.status.notin_(config["FINAL_STATUSES"]), + ) + ) + result = await db_session.execute(query) + previous_requests = list(result.scalars().all()) draft_previous_requests = [ r for r in previous_requests if r.status in config["DRAFT_STATUSES"] ] @@ -237,14 +240,21 @@ async def create_request( request = draft_previous_requests[0] else: # create a new request + data = {"request_id": request_id, **data} try: - request = await RequestModel.create(request_id=request_id, **data) - except UniqueViolationError: - raise HTTPException( - HTTP_409_CONFLICT, - "request_id already exists. Please try again", - ) - res = request.to_dict() + request = ( + await db_session.scalars( + insert(RequestModel).values(**data).returning(RequestModel) + ) + ).one() + except IntegrityError as e: + # TODO: a better user experience would be to retry instead of returning a 4XX error + if "asyncpg.exceptions.UniqueViolationError" in str(e): + raise HTTPException( + HTTP_409_CONFLICT, + "request_id already exists. Please try again", + ) + raise if request.status in config["UPDATE_ACCESS_STATUSES"]: # the access request is approved: grant/revoke access @@ -260,14 +270,16 @@ async def create_request( ) try: - redirect_url = post_status_update(request.status, res, resource_paths) + redirect_url = post_status_update( + request.status, request.to_dict(), resource_paths + ) except Exception: # if external calls or other actions fail: revert logger.error("Something went wrong during post-status-update actions") if not draft_previous_requests: logger.warning(f"Deleting the request that was just created ({request_id})") - await RequestModel.delete.where( - RequestModel.request_id == request_id - ).gino.status() + await db_session.execute( + delete(RequestModel).where(RequestModel.request_id == request_id) + ) if request.status in config["UPDATE_ACCESS_STATUSES"]: logger.warning(f"Reverting the previous access {action} action") await grant_or_revoke_arborist_policy( @@ -284,9 +296,9 @@ async def create_request( # CORS limits redirections, so we redirect on the client side if redirect_url: - res["redirect_url"] = redirect_url + request.redirect_url = redirect_url - return res + return request.to_dict() @router.put("/request/{request_id}", status_code=HTTP_200_OK) @@ -295,6 +307,7 @@ async def update_request( request_id: uuid.UUID, status: str = Body(..., embed=True), auth=Depends(Auth), + db_session: AsyncSession = Depends(get_db_session), ) -> dict: """ Update an access request with a new "status". @@ -305,59 +318,58 @@ async def update_request( api_request.app.arborist_client, expand=True ) - # only allow 1 update request at a time on the same row - async with db.transaction(): - request = ( - await RequestModel.query.where(RequestModel.request_id == request_id) - # lock the row by using FOR UPDATE clause - .execution_options(populate_existing=True) - .with_for_update() - .gino.first_or_404() - ) - - resource_paths = arborist.get_resource_paths_for_policy( - existing_policies["policies"], request.policy_id - ) - await auth.authorize( - "update", - resource_paths, + # selecting the row with a lock (`with_for_update`) only allows 1 update request at a time + # on the same row + query = ( + select(RequestModel) + .where(RequestModel.request_id == request_id) + .with_for_update() + ) + result = await db_session.execute(query) + request = result.scalar() + if not request: + raise HTTPException( + HTTP_404_NOT_FOUND, + "Not found", ) - if request.status == status: - logger.debug(f"Request '{request_id}' already has status '{status}'") - return request.to_dict() + resource_paths = arborist.get_resource_paths_for_policy( + existing_policies["policies"], request.policy_id + ) + await auth.authorize( + "update", + resource_paths, + ) - allowed_statuses = config["ALLOWED_REQUEST_STATUSES"] - if status not in allowed_statuses: - raise HTTPException( - HTTP_400_BAD_REQUEST, - f"Status '{status}' is not an allowed request status ({allowed_statuses})", - ) + if request.status == status: + logger.debug(f"Request '{request_id}' already has status '{status}'") + return request.to_dict() - if status in config["UPDATE_ACCESS_STATUSES"]: - # the access request is approved: grant/revoke access - action = "revoke" if request.revoke else "grant" - logger.debug( - f"Status '{status}' is one of UPDATE_ACCESS_STATUSES {config['UPDATE_ACCESS_STATUSES']}, attempting to {action} access in Arborist" - ) - await grant_or_revoke_arborist_policy( - api_request.app.arborist_client, - request.policy_id, - request.username, - request.revoke, - ) + allowed_statuses = config["ALLOWED_REQUEST_STATUSES"] + if status not in allowed_statuses: + raise HTTPException( + HTTP_400_BAD_REQUEST, + f"Status '{status}' is not an allowed request status ({allowed_statuses})", + ) - old_status = request.status - request = await ( - RequestModel.update.where(RequestModel.request_id == request_id) - .values(status=status, updated_time=datetime.utcnow()) - .returning(*RequestModel) - .gino.first() + if status in config["UPDATE_ACCESS_STATUSES"]: + # the access request is approved: grant/revoke access + action = "revoke" if request.revoke else "grant" + logger.debug( + f"Status '{status}' is one of UPDATE_ACCESS_STATUSES {config['UPDATE_ACCESS_STATUSES']}, attempting to {action} access in Arborist" + ) + await grant_or_revoke_arborist_policy( + api_request.app.arborist_client, + request.policy_id, + request.username, + request.revoke, ) - # release the connection early, `post_status_update` could take time - # https://python-gino.org/docs/en/1.0/reference/extensions/starlette.html#lazy-connection - await api_request["connection"].release(permanent=False) + old_status = request.status + request.status = status + request.updated_time = datetime.now(timezone.utc) + # commit the transaction, releasing the lock - `post_status_update` could take time + db_session.commit() res = request.to_dict() @@ -366,12 +378,9 @@ async def update_request( except Exception: # if external calls or other actions fail: revert logger.error("Something went wrong during post-status-update actions") logger.warning(f"Reverting to the previous status: {old_status}") - request = await ( - RequestModel.update.where(RequestModel.request_id == request_id) - .values(status=old_status, updated_time=datetime.utcnow()) - .returning(*RequestModel) - .gino.first() - ) + request.status = old_status + request.updated_time = datetime.now(timezone.utc) + db_session.commit() if status in config["UPDATE_ACCESS_STATUSES"]: logger.warning(f"Reverting the previous access {action} action") await grant_or_revoke_arborist_policy( @@ -398,11 +407,12 @@ async def delete_request( api_request: Request, request_id: uuid.UUID, auth=Depends(Auth), + db_session: AsyncSession = Depends(get_db_session), ) -> dict: """ Delete an access request. - /!\ Note that deleting an access request that has already been approved does NOT revoke the access + WARNING: deleting an access request that has already been approved does NOT revoke the access that has been granted. It only removes the trace of that access request from the database. """ logger.info(f"Deleting request '{request_id}'") @@ -410,21 +420,25 @@ async def delete_request( api_request.app.arborist_client, expand=True ) - async with db.transaction(): - request = ( - await RequestModel.delete.where(RequestModel.request_id == request_id) - .returning(*RequestModel) - .gino.first_or_404() + query = select(RequestModel).where(RequestModel.request_id == request_id) + result = await db_session.execute(query) + request = result.scalar() + if not request: + raise HTTPException( + HTTP_404_NOT_FOUND, + "Not found", ) - # if not authorized, the exception raised by `auth.authorize` - # triggers a transaction rollback, so we don't delete - await auth.authorize( - "delete", - arborist.get_resource_paths_for_policy( - existing_policies["policies"], request.policy_id - ), - ) + await auth.authorize( + "delete", + arborist.get_resource_paths_for_policy( + existing_policies["policies"], request.policy_id + ), + ) + + await db_session.execute( + delete(RequestModel).where(RequestModel.request_id == request_id) + ) return {"request_id": request_id} diff --git a/src/requestor/routes/query.py b/src/requestor/routes/query.py index 456fad6..bbc36ef 100644 --- a/src/requestor/routes/query.py +++ b/src/requestor/routes/query.py @@ -1,6 +1,8 @@ import uuid from datetime import datetime from fastapi import APIRouter, Body, Depends, FastAPI, HTTPException +from sqlalchemy import select +from sqlalchemy.ext.asyncio.session import AsyncSession from starlette.requests import Request from starlette.status import ( HTTP_200_OK, @@ -13,14 +15,18 @@ from .. import logger, arborist from ..auth import Auth from ..config import config -from ..models import Request as RequestModel +from ..db import Request as RequestModel, get_db_session router = APIRouter() async def get_filtered_requests( - username: str = None, draft: bool = True, final: bool = True, filters: dict = {} + db_session, + username: str = None, + draft: bool = True, + final: bool = True, + filters: dict = {}, ) -> list: """ If not None, gets all the requests made by user with given username. @@ -28,7 +34,7 @@ async def get_filtered_requests( If only non-final requests are needed then set final=False. Add filters if neccessary as a dictionary of {param : } to get filtered results """ - query = RequestModel.query + query = select(RequestModel) if username: query = query.where(RequestModel.username == username) if not draft: @@ -38,7 +44,8 @@ async def get_filtered_requests( for field, values in filters.items(): query = query.where(getattr(RequestModel, field).in_(values)) - return [r for r in (await query.gino.all())] + result = await db_session.execute(query) + return list(result.scalars().all()) def populate_filters_from_query_params(query_params): @@ -55,23 +62,27 @@ def populate_filters_from_query_params(query_params): elif not hasattr(RequestModel, param): raise HTTPException( HTTP_400_BAD_REQUEST, - f"The parameter - '{param}' is invalid.", + f"The parameter '{param}' is invalid", ) elif not value: raise HTTPException( HTTP_400_BAD_REQUEST, - f"The param '{param}' must have a non-empty value.", + f"The parameter '{param}' must have a non-empty value", ) else: try: if getattr(RequestModel, param).type.python_type == bool: value = value.lower() == "true" elif getattr(RequestModel, param).type.python_type == datetime: + # `multi_items()` interprets `+` as an encoded space, but in the case of a + # datetime it's an actual `+` character. To support dates provided as input + # as non-url-encoded strings, replace spaces with `+`. + value = value.replace(" ", "+") value = datetime.fromisoformat(value) except ValueError: raise HTTPException( HTTP_400_BAD_REQUEST, - f"The value - '{value}' for '{param}' parameter is invalid.", + f"The value '{value}' for '{param}' parameter is invalid.", ) filter_dict[param].add(value) return filter_dict, active @@ -81,6 +92,7 @@ def populate_filters_from_query_params(query_params): async def list_requests( api_request: Request, auth=Depends(Auth), + db_session: AsyncSession = Depends(get_db_session), ) -> list: """ List all the requests the current user has access to see. @@ -103,7 +115,9 @@ async def list_requests( "policy_id=foo&revoke=False" means "the policy is foo and revoke is false" (different field names). """ filter_dict, active = populate_filters_from_query_params(api_request.query_params) - requests = await get_filtered_requests(final=(not active), filters=filter_dict) + requests = await get_filtered_requests( + db_session, final=(not active), filters=filter_dict + ) # get the resources the current user has access to see token_claims = await auth.get_token_claims() @@ -159,7 +173,11 @@ async def list_requests( @router.get("/request/user", status_code=HTTP_200_OK) -async def list_user_requests(api_request: Request, auth=Depends(Auth)) -> list: +async def list_user_requests( + api_request: Request, + auth=Depends(Auth), + db_session: AsyncSession = Depends(get_db_session), +) -> list: """ List current user's requests. @@ -192,8 +210,9 @@ async def list_user_requests(api_request: Request, auth=Depends(Auth)) -> list: ) logger.debug(f"Getting requests for user '{username}' with active = '{active}'") user_requests = await get_filtered_requests( - # if we only want active requests, filter out requests in a final status + db_session, username, + # if we only want active requests, filter out requests in a final status: final=(not active), filters=filter_dict, ) @@ -205,12 +224,18 @@ async def get_request( api_request: Request, request_id: uuid.UUID, auth=Depends(Auth), + db_session: AsyncSession = Depends(get_db_session), ) -> dict: logger.debug(f"Getting request '{request_id}'") - request = await RequestModel.query.where( - RequestModel.request_id == request_id - ).gino.first() + query = select(RequestModel).where(RequestModel.request_id == request_id) + result = await db_session.execute(query) + request = result.scalar() + if not request: + raise HTTPException( + HTTP_404_NOT_FOUND, + "Not found", + ) existing_policies = await arborist.list_policies( api_request.app.arborist_client, expand=True ) @@ -241,6 +266,7 @@ async def check_user_resource_paths( resource_paths: list = Body(..., embed=True), permissions: list = Body(None, embed=True), auth=Depends(Auth), + db_session: AsyncSession = Depends(get_db_session), ) -> dict: """ Return whether the current user has already requested access to the @@ -261,7 +287,9 @@ async def check_user_resource_paths( HTTP_403_FORBIDDEN, "This endpoint does not support tokens that are not linked to a user", ) - user_requests = await get_filtered_requests(username, draft=False, final=False) + user_requests = await get_filtered_requests( + db_session, username, draft=False, final=False + ) positive_requests = [r for r in user_requests if not r.revoke] existing_policies = await arborist.list_policies( api_request.app.arborist_client, expand=True diff --git a/src/requestor/routes/system.py b/src/requestor/routes/system.py index b9d2a98..dec1b99 100644 --- a/src/requestor/routes/system.py +++ b/src/requestor/routes/system.py @@ -1,6 +1,8 @@ -from fastapi import APIRouter, FastAPI, Request +from fastapi import APIRouter, Depends, FastAPI, Request +from sqlalchemy import text +from sqlalchemy.ext.asyncio.session import AsyncSession -from ..models import Request as RequestModel +from ..db import get_db_session router = APIRouter() @@ -12,8 +14,10 @@ def get_version(request: Request) -> dict: @router.get("/_status") -async def get_status() -> dict: - await RequestModel.query.gino.first() +async def get_status( + db_session: AsyncSession = Depends(get_db_session), +) -> dict: + await db_session.execute(text("SELECT 1;")) return dict(status="OK") diff --git a/tests/__init__.py b/tests/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tests/conftest.py b/tests/conftest.py index dc3f6c2..20a6e5d 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -1,23 +1,23 @@ import asyncio -from alembic.config import main as alembic_main -import copy import os import pytest +import pytest_asyncio import requests +from sqlalchemy.ext.asyncio import create_async_engine from starlette.config import environ from starlette.testclient import TestClient from unittest.mock import AsyncMock, MagicMock, patch -from requestor.arborist import get_auto_policy_id - - -# Set REQUESTOR_CONFIG_PATH *before* loading the configuration +# Set REQUESTOR_CONFIG_PATH *before* loading requestor modules CURRENT_DIR = os.path.dirname(os.path.realpath(__file__)) environ["REQUESTOR_CONFIG_PATH"] = os.path.join( CURRENT_DIR, "test-requestor-config.yaml" ) + from requestor.app import app_init +from requestor.arborist import get_auto_policy_id from requestor.config import config +from requestor.db import Base, get_db_engine_and_sessionmaker, initialize_db @pytest.fixture(scope="session") @@ -26,27 +26,32 @@ def app(): return app -@pytest.fixture(autouse=True, scope="session") -def setup_test_database(): +@pytest_asyncio.fixture(scope="function") +async def db_session(): """ - At teardown, restore original config and reset test DB. + Creates a new async DB session. Reset the test DB before and after every test. """ - saved_config = copy.deepcopy(config._configs) + engine = create_async_engine(config["DB_URL"], echo=False, future=True) - alembic_main(["--raiseerr", "upgrade", "head"]) + async with engine.begin() as conn: + await conn.run_sync(Base.metadata.drop_all) + await conn.run_sync(Base.metadata.create_all) - yield + initialize_db() + _, session_maker_instance = get_db_engine_and_sessionmaker() - # restore old configs - config.update(saved_config) + async with session_maker_instance() as session: + yield session - if not config["TEST_KEEP_DB"]: - alembic_main(["--raiseerr", "downgrade", "base"]) + async with engine.begin() as conn: + await conn.run_sync(Base.metadata.drop_all) + await engine.dispose() -@pytest.fixture() -def client(): - with TestClient(app_init()) as client: + +@pytest.fixture +def client(app, db_session): + with TestClient(app) as client: yield client @@ -168,41 +173,33 @@ def list_roles_patcher(): role_patch.stop() -@pytest.fixture(autouse=True, scope="function", params=["user_token", "client_token"]) -def access_token_user_client_patcher(client, request): - """ - The `access_token` function will return first a token linked to a test - user, then a token linked to a test client. - """ - - async def get_access_token(*args, **kwargs): - if request.param == "user_token": - return {"sub": "1", "context": {"user": {"name": "requestor_user"}}} - if request.param == "client_token": - return {"context": {}, "azp": "test-client-id"} +def pytest_generate_tests(metafunc): + # set the `access_token_patcher` auto-fixture parameter depending on + # whether `access_token_user_only_patcher` is used. + access_token_patcher_param = ["user_token", "client_token"] + if "access_token_user_only_patcher" in metafunc.fixturenames: + access_token_patcher_param = ["user_token"] + metafunc.parametrize("access_token_patcher_param", access_token_patcher_param) - access_token_mock = MagicMock() - access_token_mock.return_value = get_access_token - access_token_patch = patch("requestor.auth.access_token", access_token_mock) - access_token_patch.start() - - yield access_token_mock - - access_token_patch.stop() +@pytest.fixture(autouse=True, scope="function") +def access_token_patcher(client, request, access_token_patcher_param): + """ + Patch the `access_token` function. By default, this fixture is parametrized to return + first a token linked to a test user, then a token linked to a test client. + The `access_token_user_only_patcher` fixture should be used explicitely instead of this + automatic fixture for endpoints that do not support client tokens OR for tests that don't + need to run multiple times, testing each type of token. -@pytest.fixture(scope="function") -def access_token_user_only_patcher(client, request): - """ - The `access_token` function will return a token linked to a test user. - This fixture should be used explicitely instead of the automatic - `access_token_user_client_patcher` fixture for endpoints that do not - support client tokens. + The `access_token_patcher_param` parameter is set up by `pytest_generate_tests`. """ async def get_access_token(*args, **kwargs): - return {"sub": "1", "context": {"user": {"name": "requestor_user"}}} + if access_token_patcher_param == "user_token": + return {"sub": "1", "context": {"user": {"name": "requestor_user"}}} + if access_token_patcher_param == "client_token": + return {"context": {}, "azp": "test-client-id"} access_token_mock = MagicMock() access_token_mock.return_value = get_access_token @@ -215,24 +212,11 @@ async def get_access_token(*args, **kwargs): access_token_patch.stop() -@pytest.fixture(autouse=True) -def clean_db(): +@pytest.fixture(scope="function") +def access_token_user_only_patcher(): """ - Before each test, delete all existing requests from the DB + See `access_token_patcher` docstring """ - # The code below doesn't work because of this issue - # https://github.com/encode/starlette/issues/440, so for now reset - # using alembic. - # pytest-asyncio = "^0.14.0" - # from requestor.models import Request as RequestModel - # @pytest.mark.asyncio - # async def clean_db(): - # await RequestModel.delete.gino.all() - # yield - - alembic_main(["--raiseerr", "downgrade", "base"]) - alembic_main(["--raiseerr", "upgrade", "head"]) - yield @@ -270,6 +254,9 @@ def do_patch(authorized=True): "http://arborist-service/user/requestor_user/policy/test-policy": { "DELETE": ({}, 204 if authorized else 403) }, + "http://arborist-service/user/requestor_user/policy/test-policy-with-external-calls": { + "DELETE": ({}, 204 if authorized else 403) + }, "http://arborist-service/policy/?expand": { "GET": ( { diff --git a/tests/migrations/conftest.py b/tests/migrations/conftest.py new file mode 100644 index 0000000..0af69bf --- /dev/null +++ b/tests/migrations/conftest.py @@ -0,0 +1,71 @@ +import os + +from alembic import command +from alembic.config import Config +from asyncpg.exceptions import UndefinedTableError +from sqlalchemy import text +from sqlalchemy.exc import ProgrammingError +from sqlalchemy.ext.asyncio import create_async_engine +import pytest_asyncio + +from requestor.config import config +from requestor.db import Base, get_db_engine_and_sessionmaker + + +@pytest_asyncio.fixture(autouse=True, scope="function") +async def reset(db_session): + """ + Before every migration test, drop all tables and remove the current version from the `alembic_version` table, if it exists + """ + engine, _ = get_db_engine_and_sessionmaker() + async with engine.begin() as conn: + await conn.run_sync(Base.metadata.drop_all) + + try: + await db_session.execute(text("DELETE FROM alembic_version")) + await db_session.commit() + except (ProgrammingError, UndefinedTableError) as e: + if "UndefinedTableError" in str(e): + await db_session.rollback() + else: + raise + + +class MigrationRunner: + def __init__(self): + self.action: str = "" + self.target: str = "" + current_dir = os.path.dirname(os.path.realpath(__file__)) + self.alembic_ini_path = os.path.join(current_dir, "../../alembic.ini") + + async def upgrade(self, target: str): + self.action = "upgrade" + self.target = target + await self._run_alembic_command() + + async def downgrade(self, target: str): + self.action = "downgrade" + self.target = target + await self._run_alembic_command() + + async def _run_alembic_command(self): + """ + Args: + action (str): "upgrade" or "downgrade" + target (str): "base", "head" or revision ID + """ + + def _run_command(connection): + alembic_cfg = Config(self.alembic_ini_path) + alembic_cfg.attributes["connection"] = connection + if self.action == "upgrade": + command.upgrade(alembic_cfg, self.target) + elif self.action == "downgrade": + command.downgrade(alembic_cfg, self.target) + else: + raise Exception(f"Unknown MigrationRunner action '{self.action}'") + + engine = create_async_engine(config["DB_URL"], echo=True) + async with engine.begin() as conn: + await conn.run_sync(_run_command) + await engine.dispose() diff --git a/tests/test_migrations.py b/tests/migrations/test_migration_42cbae986650.py similarity index 59% rename from tests/test_migrations.py rename to tests/migrations/test_migration_42cbae986650.py index 3ec959b..ecf4a39 100644 --- a/tests/test_migrations.py +++ b/tests/migrations/test_migration_42cbae986650.py @@ -1,33 +1,46 @@ from alembic.config import main as alembic_main from datetime import datetime import pytest +from sqlalchemy import text from requestor.arborist import get_auto_policy_id -from requestor.models import db +from tests.migrations.conftest import MigrationRunner -@pytest.mark.skip( - reason="Gino and new version of pytest-asyncio doesn't play nicely so this test is doomed, but the functionality of the app is not affected" -) @pytest.mark.asyncio @pytest.mark.parametrize( "resource_path", ["/my/resource/path", "/path/with/single'|'quotes", "/path/with/2/single''quotes"], ) -async def test_42cbae986650_upgrade(resource_path): +async def test_42cbae986650_upgrade( + db_session, access_token_user_only_patcher, resource_path +): # before "Add policy_id and revoke columns to request table" migration - alembic_main(["--raiseerr", "downgrade", "c0a92da5ac69"]) + migration_runner = MigrationRunner() + await migration_runner.upgrade("c0a92da5ac69") # insert a request uuid = "571c6a1a-f21f-11ea-adc1-0242ac120002" date = str(datetime.now()) sql_resource_path = resource_path.replace("'", "''") # escape single quotes insert_stmt = f"INSERT INTO requests(\"request_id\", \"username\", \"resource_path\", \"resource_id\", \"resource_display_name\", \"status\", \"created_time\", \"updated_time\") VALUES ('{uuid}', 'username', '{sql_resource_path}', 'my_resource', 'My Resource', 'DRAFT', '{date}', '{date}')" - await db.scalar(db.text(insert_stmt)) + await db_session.execute(text(insert_stmt)) # check that the request data was inserted correctly - data = await db.all(db.text("SELECT * FROM requests")) - request = {k: str(v) for row in data for k, v in row.items()} + # NOTE: listing columns instead of "select *" so that the "select *" statement isn't + # cached and can be used later. If we use it before AND after the migration, we get an + # error `asyncpg.exceptions.InvalidCachedStatementError` + data = list( + ( + await db_session.execute( + text( + "SELECT request_id, username, resource_id, resource_display_name, status, resource_path, created_time, updated_time FROM requests" + ) + ) + ).all() + ) + assert len(data) == 1 + request = {k: str(v) for k, v in data[0]._mapping.items()} assert request == { "request_id": uuid, "username": "username", @@ -38,30 +51,31 @@ async def test_42cbae986650_upgrade(resource_path): "created_time": date, "updated_time": date, } + await db_session.commit() # run "Add policy_id and revoke columns to request table" migration - alembic_main(["--raiseerr", "upgrade", "42cbae986650"]) + await migration_runner.upgrade("42cbae986650") # check that the migration updated the request data correctly - data = await db.all(db.text("SELECT * FROM requests")) + data = list((await db_session.execute(text("SELECT * FROM requests"))).all()) assert len(data) == 1 - request = {k: v for k, v in data[0].items()} + request = {k: str(v) for k, v in data[0]._mapping.items()} assert resource_path not in request assert request["policy_id"] == get_auto_policy_id([resource_path]) - assert request["revoke"] == False + assert request["revoke"] == "False" -@pytest.mark.skip( - reason="Gino and new version of pytest-asyncio doesn't play nicely so this test is doomed, but the functionality of the app is not affected" -) @pytest.mark.asyncio @pytest.mark.parametrize( "resource_path", ["/my/resource/path", "/path/with/single'|'quotes", "/path/with/2/single''quotes"], ) -async def test_42cbae986650_downgrade(resource_path): +async def test_42cbae986650_downgrade( + db_session, access_token_user_only_patcher, resource_path +): # after "Add policy_id and revoke columns to request table" migration - alembic_main(["--raiseerr", "downgrade", "42cbae986650"]) + migration_runner = MigrationRunner() + await migration_runner.upgrade("42cbae986650") # insert a request uuid = "571c6a1a-f21f-11ea-adc1-0242ac120002" @@ -69,11 +83,20 @@ async def test_42cbae986650_downgrade(resource_path): # escape single quotes sql_policy = get_auto_policy_id([resource_path]).replace("'", "''") insert_stmt = f"INSERT INTO requests(\"request_id\", \"username\", \"policy_id\", \"resource_id\", \"resource_display_name\", \"status\", \"revoke\", \"created_time\", \"updated_time\") VALUES ('{uuid}', 'username', '{sql_policy}', 'my_resource', 'My Resource', 'DRAFT', 'false', '{date}', '{date}')" - await db.scalar(db.text(insert_stmt)) + await db_session.execute(text(insert_stmt)) # check that the request data was inserted correctly - data = await db.all(db.text("SELECT * FROM requests")) - request = {k: str(v) for row in data for k, v in row.items()} + data = list( + ( + await db_session.execute( + text( + "SELECT request_id, username, resource_id, resource_display_name, status, policy_id, revoke, created_time, updated_time FROM requests" + ) + ) + ).all() + ) + assert len(data) == 1 + request = {k: str(v) for k, v in data[0]._mapping.items()} assert request == { "request_id": uuid, "username": "username", @@ -85,14 +108,15 @@ async def test_42cbae986650_downgrade(resource_path): "created_time": date, "updated_time": date, } + await db_session.commit() # downgrade to before "Add policy_id and revoke columns to request table" migration - alembic_main(["--raiseerr", "downgrade", "c0a92da5ac69"]) + await migration_runner.downgrade("c0a92da5ac69") # check that the migration updated the request data correctly - data = await db.all(db.text("SELECT * FROM requests")) + data = list((await db_session.execute(text("SELECT * FROM requests"))).all()) assert len(data) == 1 - request = {k: v for k, v in data[0].items()} + request = {k: str(v) for k, v in data[0]._mapping.items()} assert "policy_id" not in request assert "revoke" not in request assert request["resource_path"] == "/test/resource/path" # hardcoded in migration diff --git a/tests/migrations/test_migration_c0a92da5ac69.py b/tests/migrations/test_migration_c0a92da5ac69.py new file mode 100644 index 0000000..65d590e --- /dev/null +++ b/tests/migrations/test_migration_c0a92da5ac69.py @@ -0,0 +1,25 @@ +import pytest + +from sqlalchemy import select, text +from sqlalchemy.exc import ProgrammingError +from requestor.db import Request +from tests.migrations.conftest import MigrationRunner + + +@pytest.mark.asyncio +async def test_c0a92da5ac69_upgrade(db_session, access_token_user_only_patcher): + # state before the migration + migration_runner = MigrationRunner() + await migration_runner.downgrade("base") + + # the requests table should not exist + with pytest.raises(ProgrammingError, match='relation "requests" does not exist'): + await db_session.execute(text("SELECT * FROM requests")) + await db_session.commit() + + # run the migration + await migration_runner.upgrade("c0a92da5ac69") + + # the requests table should now exist + result = await db_session.execute(text("SELECT * FROM requests")) + assert list(result.all()) == [] diff --git a/tests/migrations/test_migrations.py b/tests/migrations/test_migrations.py new file mode 100644 index 0000000..79469b0 --- /dev/null +++ b/tests/migrations/test_migrations.py @@ -0,0 +1,39 @@ +import os + + +CURRENT_DIR = os.path.dirname(os.path.realpath(__file__)) + + +def test_all_migrations_have_tests(): + """ + Check that all the database migrations have corresponding unit tests. The check is based on the + assumption that each migration is under `migrations/versions/_.py` + and has a corresponding test file at `tests/migrations/test_migration_.py`. + """ + # get the list of migrations that do have tests + tests_file = [ + f + for f in os.listdir(CURRENT_DIR) + if os.path.isfile(os.path.join(CURRENT_DIR, f)) + ] + migrations_with_tests = set() + for test_file in tests_file: + try: + migrations_with_tests.add( + test_file.split(".py")[0].split("test_migration_")[1] + ) + except Exception: + pass + + # get the list of existing DB migrations, and check if they have corresponding tests + migrations_path = os.path.join(CURRENT_DIR, "../../migrations/versions") + migration_files = [ + f + for f in os.listdir(migrations_path) + if os.path.isfile(os.path.join(migrations_path, f)) + ] + for migration_file in migration_files: + revision_id = migration_file.split(".py")[0].split("_")[0] + assert ( + revision_id in migrations_with_tests + ), f"Expected migration '{revision_id}' to have a corresponding test file at '{CURRENT_DIR}/test_migration_{revision_id}.py'" diff --git a/tests/test-requestor-config.yaml b/tests/test-requestor-config.yaml index 39c6487..122dbd2 100644 --- a/tests/test-requestor-config.yaml +++ b/tests/test-requestor-config.yaml @@ -3,7 +3,6 @@ #################### DEBUG: true -TEST_KEEP_DB: false DOCS_URL_PREFIX: / #################### @@ -11,7 +10,7 @@ DOCS_URL_PREFIX: / #################### # These are required for automated testing (see .github/workflows/ci.yaml) -DB_DRIVER: postgresql +DB_DRIVER: postgresql+asyncpg DB_HOST: localhost DB_PORT: 5432 DB_USER: postgres diff --git a/tests/test_actions.py b/tests/test_actions.py index 51ca54d..ab8d453 100644 --- a/tests/test_actions.py +++ b/tests/test_actions.py @@ -83,6 +83,8 @@ def test_create_request_with_external_calls(client): } with mock.patch("requestor.request_utils.requests") as mock_requests: res = client.post("/request", json=data) + assert res.status_code == 201, res.text + mock_requests.post.assert_called_once_with( "https://abc_system/access", data={"dataset": data["resource_id"], "username": data["username"]}, @@ -92,7 +94,6 @@ def test_create_request_with_external_calls(client): "https://xyz_system/access", data=None, headers={} ) - assert res.status_code == 201, res.text request_data = res.json() request_id = request_data.get("request_id") assert request_id, "POST /request did not return a request_id" @@ -126,6 +127,8 @@ def test_update_request_with_external_calls(client): with mock.patch("requestor.request_utils.requests") as mock_requests: # update the request status res = client.put(f"/request/{request_id}", json={"status": "APPROVED"}) + assert res.status_code == 200, res.text + mock_requests.post.assert_called_once_with( "https://abc_system/access", data={"dataset": data["resource_id"], "username": data["username"]}, @@ -135,7 +138,6 @@ def test_update_request_with_external_calls(client): "https://xyz_system/access", data=None, headers={} ) - assert res.status_code == 200, res.text request_data = res.json() assert request_data["status"] == "APPROVED" @@ -156,6 +158,7 @@ def test_create_request_with_authed_external_call(client): "access_token": mock_access_token } res = client.post("/request", json=data) + assert res.status_code == 201, res.text # call to get credentials mock_requests.post.assert_called_once_with( @@ -171,7 +174,6 @@ def test_create_request_with_authed_external_call(client): headers={"authorization": f"bearer {mock_access_token}"}, ) - assert res.status_code == 201, res.text request_data = res.json() request_id = request_data.get("request_id") assert request_id, "POST /request did not return a request_id" @@ -188,13 +190,14 @@ def test_create_request_with_redirect_and_external_call(client): } with mock.patch("requestor.request_utils.requests") as mock_requests: res = client.post("/request", json=data) + assert res.status_code == 201, res.text + mock_requests.post.assert_called_once_with( "https://abc_system/access", data={"dataset": data["resource_id"], "username": data["username"]}, headers={}, ) - assert res.status_code == 201, res.text request_data = res.json() request_id = request_data.get("request_id") assert request_id, "POST /request did not return a request_id"