From 3a7794946290c916db36a078264fe42f618e06b4 Mon Sep 17 00:00:00 2001 From: krishna Date: Wed, 24 Jun 2026 12:15:29 -0500 Subject: [PATCH 01/10] UV chnages for running tests --- .../workflows/run_tests_against_dev_env.yaml | 14 +- gen3-integration-tests/poetry.lock | 4564 ----------------- gen3-integration-tests/pyproject.toml | 91 +- gen3-integration-tests/uv.lock | 2768 ++++++++++ 4 files changed, 2818 insertions(+), 4619 deletions(-) delete mode 100644 gen3-integration-tests/poetry.lock create mode 100644 gen3-integration-tests/uv.lock diff --git a/.github/workflows/run_tests_against_dev_env.yaml b/.github/workflows/run_tests_against_dev_env.yaml index 4ff3f120e..46b1d7d6d 100644 --- a/.github/workflows/run_tests_against_dev_env.yaml +++ b/.github/workflows/run_tests_against_dev_env.yaml @@ -97,11 +97,11 @@ jobs: if [[ "$REPO" == "gen3sdk-python" ]]; then sed -i "s|^gen3 = \".*\"|gen3 = { git = \"https://github.com/uc-cdis/gen3sdk-python\", rev = \"$BRANCH\" }|" pyproject.toml fi - pip install poetry - poetry lock - poetry install - poetry show - sudo apt update && poetry run playwright install-deps && poetry run playwright install --with-deps chromium + pip install uv + uv lock + uv sync + uv pip list + sudo apt update && uv run playwright install-deps && uv run playwright install --with-deps chromium sudo apt install openjdk-11-jre -y - name: Configure AWS Credentials @@ -151,7 +151,7 @@ jobs: run: | echo -e "\n\n************ Run tests ************" >> logs/gh_action_logs.txt mkdir output - poetry run pytest --video=retain-on-failure -n logical -m "not wip" --alluredir allure-results --no-header --dist loadscope ${{ env.TEST_LABEL }} >> logs/gh_action_logs.txt 2>&1 + uv run pytest --video=retain-on-failure -n logical -m "not wip" --alluredir allure-results --no-header --dist loadscope ${{ env.TEST_LABEL }} >> logs/gh_action_logs.txt 2>&1 if [ $? -ne 0 ]; then echo "PR_ERROR_MSG=Test(s) failures encountered in PR" >> $GITHUB_ENV fi @@ -240,7 +240,7 @@ jobs: id: generate_slack_report if: ${{ steps.upload_allure_report.outcome == 'success' || steps.upload_gh_action_logs.outcome == 'success' }} continue-on-error: true # if this fails, we still need to run clean-up steps - 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diff --git a/.github/workflows/run_tests_against_dev_env.yaml b/.github/workflows/run_tests_against_dev_env.yaml index 46b1d7d6d..47c3be0a6 100644 --- a/.github/workflows/run_tests_against_dev_env.yaml +++ b/.github/workflows/run_tests_against_dev_env.yaml @@ -132,7 +132,7 @@ jobs: mkdir $HOME/.gen3 mkdir logs echo "****** Prepare CI Environment ******" > logs/gh_action_logs.txt - ./gen3_ci/scripts/generate_api_keys.sh test_data/test_setup/users.csv ${HOSTNAME} ${NAMESPACE} >> logs/gh_action_logs.txt 2>&1 + ./gen3_ci/scripts/generate_api_keys.sh test_data/test_setup/users.csv ${HOSTNAME_PROTOCOL} ${HOSTNAME} ${NAMESPACE} >> logs/gh_action_logs.txt 2>&1 - name: Get test labels id: get_test_labels From 293d3e266ab958f7128b45c99fd3d27eb64269d0 Mon Sep 17 00:00:00 2001 From: krishna Date: Wed, 24 Jun 2026 14:08:09 -0500 Subject: [PATCH 03/10] Updates --- .github/workflows/run_tests_against_dev_env.yaml | 1 - gen3-integration-tests/pyproject.toml | 7 ------- gen3-integration-tests/uv.lock | 8 ++++---- 3 files changed, 4 insertions(+), 12 deletions(-) diff --git a/.github/workflows/run_tests_against_dev_env.yaml b/.github/workflows/run_tests_against_dev_env.yaml index 47c3be0a6..a184a2379 100644 --- a/.github/workflows/run_tests_against_dev_env.yaml +++ b/.github/workflows/run_tests_against_dev_env.yaml @@ -98,7 +98,6 @@ jobs: sed -i "s|^gen3 = \".*\"|gen3 = { git = \"https://github.com/uc-cdis/gen3sdk-python\", rev = \"$BRANCH\" }|" pyproject.toml fi pip install uv - uv lock uv sync uv pip list sudo apt update && uv run playwright install-deps && uv run playwright install --with-deps chromium diff --git a/gen3-integration-tests/pyproject.toml b/gen3-integration-tests/pyproject.toml index f3e95baa5..54fe25a88 100644 --- a/gen3-integration-tests/pyproject.toml +++ b/gen3-integration-tests/pyproject.toml @@ -43,13 +43,6 @@ dev = [ "pre-commit>=3.8.0", ] -[build-system] -requires = ["hatchling"] -build-backend = "hatchling.build" - -[tool.hatch.build.targets.wheel] -packages = ["gen3-code-vigil/gen3_integration_tests"] - [tool.pytest.ini_options] testpaths = ["tests/"] python_files = ["test_*.py"] diff --git a/gen3-integration-tests/uv.lock b/gen3-integration-tests/uv.lock index 286cd208c..bccdf3ebc 100644 --- a/gen3-integration-tests/uv.lock +++ b/gen3-integration-tests/uv.lock @@ -352,14 +352,14 @@ wheels = [ [[package]] name = "click" -version = "8.4.1" +version = "8.4.2" source = { registry = "https://pypi.org/simple" } dependencies = [ { name = "colorama", marker = "sys_platform == 'win32'" }, ] -sdist = { url = "https://files.pythonhosted.org/packages/9b/98/518d8e5081007684232226f475082b30087d0f585e8457db087298259f49/click-8.4.1.tar.gz", hash = "sha256:918b5633eddf6b41c32d4f454bf0de810065c74e3f7dbf8ee5452f8be88d3e96", size = 353007, upload-time = "2026-05-22T04:08:37.769Z" } +sdist = { url = "https://files.pythonhosted.org/packages/76/d4/81420972a676e8ffea40450d8c8c92943e7218a78fe9b64359836cc9876b/click-8.4.2.tar.gz", hash = "sha256:9a6cea6e60b17ebe0a44c5cc636d94f09bd66142c1cd7d8b4cd731c4917a15f6", size = 338000, upload-time = "2026-06-24T17:45:15.148Z" } wheels = [ - { url = "https://files.pythonhosted.org/packages/c7/0d/67e5b4109ea4a837e80daa87c2c696711955e40449a97e8926672534def2/click-8.4.1-py3-none-any.whl", hash = "sha256:482be17c6991b8c19c5429a1e995d9b0efdbb63172824c41f99965dc0ade8ec2", size = 116639, upload-time = "2026-05-22T04:08:35.26Z" }, + { url = "https://files.pythonhosted.org/packages/fb/e2/79c688af8b210d232694e31e59da9f6ec747bae31c3f5946e4e9b98860d5/click-8.4.2-py3-none-any.whl", hash = "sha256:e6f9f66136c816745b9d65817da91d61d957fb16e02e4dcd0552553c5a197b76", size = 119243, upload-time = "2026-06-24T17:45:13.73Z" }, ] [[package]] @@ -665,7 +665,7 @@ wheels = [ [[package]] name = "gen3-integration-tests" version = "0.1.0" -source = { editable = "." } +source = { virtual = "." } dependencies = [ { name = "allure-pytest" }, { name = "boto3" }, From 4c127d182cb0771c273a3558d9f23fa23d7530ce Mon Sep 17 00:00:00 2001 From: krishna Date: Wed, 24 Jun 2026 14:18:15 -0500 Subject: [PATCH 04/10] Update workflows --- .github/workflows/integration_tests.yaml | 2 +- .github/workflows/integration_tests_on_kind.yaml | 2 +- .github/workflows/nightly_run.yaml | 2 +- .github/workflows/nightly_run_gen3ff.yaml | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/.github/workflows/integration_tests.yaml b/.github/workflows/integration_tests.yaml index 19f92b879..f0bf34ef2 100644 --- a/.github/workflows/integration_tests.yaml +++ b/.github/workflows/integration_tests.yaml @@ -15,7 +15,7 @@ permissions: jobs: integration_tests: name: Integration tests - uses: uc-cdis/.github/.github/workflows/integration_tests.yaml@master + uses: uc-cdis/.github/.github/workflows/integration_tests.yaml@chore/update_to_uv with: WORKING_DIR: gen3-integration-tests secrets: diff --git a/.github/workflows/integration_tests_on_kind.yaml b/.github/workflows/integration_tests_on_kind.yaml index 87befc18d..0c3593171 100644 --- a/.github/workflows/integration_tests_on_kind.yaml +++ b/.github/workflows/integration_tests_on_kind.yaml @@ -17,7 +17,7 @@ permissions: jobs: integration_tests: name: Integration tests - uses: uc-cdis/.github/.github/workflows/integration_tests.yaml@master + uses: uc-cdis/.github/.github/workflows/integration_tests.yaml@chore/update_to_uv with: WORKING_DIR: gen3-integration-tests EXTERNAL_TO_CTDS: "true" diff --git a/.github/workflows/nightly_run.yaml b/.github/workflows/nightly_run.yaml index 66d1ac70e..3dcea15bb 100644 --- a/.github/workflows/nightly_run.yaml +++ b/.github/workflows/nightly_run.yaml @@ -13,7 +13,7 @@ on: jobs: nightly_run: name: Nightly run - uses: uc-cdis/.github/.github/workflows/integration_tests.yaml@master + uses: uc-cdis/.github/.github/workflows/integration_tests.yaml@chore/update_to_uv with: WORKING_DIR: gen3-integration-tests IS_NIGHTLY_RUN: "true" diff --git a/.github/workflows/nightly_run_gen3ff.yaml b/.github/workflows/nightly_run_gen3ff.yaml index a64c30598..c711cf109 100644 --- a/.github/workflows/nightly_run_gen3ff.yaml +++ b/.github/workflows/nightly_run_gen3ff.yaml @@ -13,7 +13,7 @@ on: jobs: nightly_run_gen3ff: name: Nightly run Gen3FF - uses: uc-cdis/.github/.github/workflows/integration_tests.yaml@master + uses: uc-cdis/.github/.github/workflows/integration_tests.yaml@chore/update_to_uv with: WORKING_DIR: gen3-integration-tests IS_NIGHTLY_RUN: "true" From f0910ccc430bd711b9f1070d70e20f67e1ca3f2e Mon Sep 17 00:00:00 2001 From: Krishna Agarwal <159047652+krishnaa05@users.noreply.github.com> Date: Thu, 25 Jun 2026 07:43:23 -0500 Subject: [PATCH 05/10] Dummy Commit From 662478863b4e8b365f32d9147771a0b33242e8a8 Mon Sep 17 00:00:00 2001 From: krishna Date: Thu, 25 Jun 2026 10:52:03 -0500 Subject: [PATCH 06/10] Fix OIDC logging info --- .secrets.baseline | 4 ++-- gen3-integration-tests/tests/test_oidc_client.py | 3 ++- 2 files changed, 4 insertions(+), 3 deletions(-) diff --git a/.secrets.baseline b/.secrets.baseline index a6bbfdd6b..584862967 100644 --- a/.secrets.baseline +++ b/.secrets.baseline @@ -324,7 +324,7 @@ "filename": "gen3-integration-tests/tests/test_oidc_client.py", "hashed_secret": "62bd0c4d3a6b445b13212d23500a7f0916757c3e", "is_verified": false, - "line_number": 143 + "line_number": 144 } ], "gen3-integration-tests/tests/test_presigned_url.py": [ @@ -394,5 +394,5 @@ } ] }, - "generated_at": "2026-06-23T15:10:45Z" + "generated_at": "2026-06-25T15:51:57Z" } diff --git a/gen3-integration-tests/tests/test_oidc_client.py b/gen3-integration-tests/tests/test_oidc_client.py index b5760e5f9..60fea3bae 100644 --- a/gen3-integration-tests/tests/test_oidc_client.py +++ b/gen3-integration-tests/tests/test_oidc_client.py @@ -108,7 +108,8 @@ def test_oidc_client_rotation(self): logger.info(f"Getting client_id and client_secret for client {client_name} ...") client_id = pytest.clients[client_name]["client_id"] client_secret = pytest.clients[client_name]["client_secret"] - logger.info(client_id, client_secret) + logger.info(f"Client id: {client_id}") + logger.info(f"Client secret: {client_secret}") # Client is rotated as part of the setup, to enable test execution in parallel for this test suite. # Rotated client_id and client_secret are retrieved from pytest.rotated_clients. From 9b2c1b8070a4ea824cf8e4b97d517db3d4f6f0fd Mon Sep 17 00:00:00 2001 From: Krishna Agarwal <159047652+krishnaa05@users.noreply.github.com> Date: Thu, 25 Jun 2026 11:52:28 -0500 Subject: [PATCH 07/10] dummy commit From 93afdca04afb1e8932f901a3dd4a93fd5b6c7a29 Mon Sep 17 00:00:00 2001 From: Krishna Agarwal <159047652+krishnaa05@users.noreply.github.com> Date: Fri, 26 Jun 2026 08:24:22 -0500 Subject: [PATCH 08/10] Dummy Commit From e1c2a2b29f713585f45020fb607d51c61097a641 Mon Sep 17 00:00:00 2001 From: Krishna Agarwal <159047652+krishnaa05@users.noreply.github.com> Date: Tue, 30 Jun 2026 09:37:18 -0500 Subject: [PATCH 09/10] dummy commit From 7fe78f23ed980b9627ea33ac8e55bcb23e6abc5e Mon Sep 17 00:00:00 2001 From: Krishna Agarwal <159047652+krishnaa05@users.noreply.github.com> Date: Wed, 1 Jul 2026 14:22:01 -0500 Subject: [PATCH 10/10] Dummy Commit