Fatal Python error: PyThreadState_Get: no current thread

[Le0nT1]

Describe the bug
Got an error when trying to run pickaxe_run.py or pickaxe_run_template.py. Tried both python and python3 and got the same erorr.
The error message is:
Fatal Python error: PyThreadState_Get: no current thread
zsh: abort python3 pickaxe_run.py

To Reproduce
Steps to reproduce the behavior:
Follow the instructions. Install minedatabase and then run pickaxe.py

Desktop (please complete the following information):

• OS: macOS Monterey
• Version: 12.6.9
• Python version: 3.6.13

[KShebek]

It seems like you are running a lower version of python than we support. Could you please update your python version to 3.9 and try again?

[Le0nT1]

It seems like you are running a lower version of python than we support. Could you please update your python version to 3.9 and try again?

Thanks.
When I ran python3 pickaxe_run_template.py, it returned an error
'/usr/local/lib/python3.9/site-packages/minedatabase/data/metacyc_rules/metacyc_intermediate_rules.tsv'
I then downloaded this repository and copied and pasted the /minedatabase/data/ in the repository to /usr/local/lib/python3.9/site-packages/minedatabase/data/ and the error is resolved and the python program ran successfully.
However, when I ran pickaxe_run.py from the instruction document webapge, it returned from minedatabase.filters import (
ImportError: cannot import name 'TanimotoFilter' from 'minedatabase.filters' (/usr/local/lib/python3.9/site-packages/minedatabase/filters/init.py) and I didn't find the tanimotoFilter file in the filters folder in the repository so I am not sure how to fix it.
I will play with the pickaxe_template.py first and see how to make predictions properly.
btw: is there a public repository for the MINE2.0 program like MINE1.0 so that the users can run the program and make predictions locally?

Thanks

[KShebek]

Sorry for the delay. How are you installing Pickaxe? Did you use pip or are you installing from source?

[Le0nT1]

Sorry for the delay. How are you installing Pickaxe? Did you use pip or are you installing from source?

Hi,
I used pip and followed the instructions here: https://mine-database.readthedocs.io/en/latest/install.html