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Files locations in CIS system

This is a project sponsored by Center of Image Science (JHU) http://cis.jhu.edu/. The complete dataset and analysis results are all host in CIS system.

Annotated pathology images

  • Annotated pathology images stained using Tau antibodies: /cis/home/zwang/Documents/ADproject/Annotation/Tau
  • Annotated pathology images stained using Amyloid-beta antibodies: /cis/home/zwang/Documents/ADproject/Annotation/Amyloid

Samples for UNET model training and testing

  • Training set (Tau tangle): /cis/home/zwang/Documents/ADproject/DatasetUnet/Tau/Train
  • Testing set (Tau tangle): /cis/home/zwang/Documents/ADproject/DatasetUnet/Tau/Test
  • Training set (Amyloid plaques): /cis/home/zwang/Documents/ADproject/DatasetUnet/Amyloid/Train
  • Testing set (Amyloid plaques): /cis/home/zwang/Documents/ADproject/DatasetUnet/Amyloid/Test

Pretrained Unet models

  • Pre-trained model for Tau tangle detection: /cis/home/zwang/Documents/ADproject/UnetModels/unet_tau.pth
  • Pre-trained model for Amyloid plaque detection: /cis/home/zwang/Documents/ADproject/UnetModels/unet_amyloid.pth

Analyzed pathology images and their results

  • Analyzed pathology images for tau tangle /cis/home/zwang/Documents/ADproject/Histology/Tau
  • Analyzed pathology images for amyloid plaque /cis/home/zwang/Documents/ADproject/Histology/Amyloid

Larger pathology image dataset

  • /cis/home/dtward/Documents/exvivohuman_11T/more_blocks/