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tsenonertsenoner
committedJan 2, 2025·
chore: update example file
·
v1.1.7v1.1.0
1 parent ff7e2e8 commit 94ef539

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+73
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‎.env.example

+1-1
Original file line numberDiff line numberDiff line change
@@ -1,2 +1,2 @@
11
PDB_ZIP_PATH=data/Pla2g2/Pla2g2_pdb.zip
2-
DEFAULT_JSON_FILE_PATH=data/Pla2g2/protspace_files/Pla2g2_noTransperancy.json
2+
DEFAULT_JSON_FILE_PATH=data/Pla2g2/protspace_files/Pla2g2_customized.json

‎data/Pla2g2/protspace_files/Pla2g2.json

-6,296
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‎data/Pla2g2/protspace_files/Pla2g2_customized.json

+36-36
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@@ -16182,50 +16182,50 @@
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"visualization_state": {
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"feature_colors": {
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"group": {
16185-
"A mammals": "rgba(255, 102, 102, 0.8)",
16186-
"B birds": "rgba(255, 178, 102, 0.8)",
16187-
"C birds": "rgba(108, 156, 204, 0.8)",
16188-
"C crocodile": "rgba(108, 156, 204, 0.8)",
16189-
"C mammals": "rgba(108, 156, 204, 0.8)",
16190-
"D birds": "rgba(102, 204, 102, 0.8)",
16191-
"D mammals": "rgba(102, 204, 102, 0.8)",
16185+
"A mammals": "rgba(255, 102, 102, 1)",
16186+
"B birds": "rgba(255, 178, 102, 1)",
16187+
"C birds": "rgba(108, 156, 204, 1)",
16188+
"C crocodile": "rgba(108, 156, 204, 1)",
16189+
"C mammals": "rgba(108, 156, 204, 1)",
16190+
"D birds": "rgba(102, 204, 102, 1)",
16191+
"D mammals": "rgba(102, 204, 102, 1)",
1619216192
"D squamates": "rgba(204, 255, 204, 1)",
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"D1 reptilia": "rgba(125, 232, 125, 1)",
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"D2 reptilia": "rgba(61, 194, 61, 1)",
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"D3 reptilia": "rgba(61, 92, 61, 1)",
16196-
"E birds": "rgba(255, 102, 255, 0.8)",
16197-
"E crocodile": "rgba(255, 102, 255, 0.8)",
16198-
"E mammals": "rgba(255, 102, 255, 0.8)",
16199-
"E serpentes": "rgba(255, 102, 255, 0.8)",
16200-
"E squamates": "rgba(255, 102, 255, 0.8)",
16201-
"E turtle": "rgba(255, 102, 255, 0.8)",
16202-
"F mammals": "rgba(150, 150, 41, 0.8)",
16203-
"F turtle": "rgba(150, 150, 41, 0.8)",
16204-
"F squamates": "rgba(150, 150, 41, 0.8)",
16205-
"G squamates": "rgba(48, 214, 214, 0.8)",
16206-
"V mammals": "rgba(178, 102, 255, 0.8)",
16196+
"E birds": "rgba(255, 102, 255, 1)",
16197+
"E crocodile": "rgba(255, 102, 255, 1)",
16198+
"E mammals": "rgba(255, 102, 255, 1)",
16199+
"E serpentes": "rgba(255, 102, 255, 1)",
16200+
"E squamates": "rgba(255, 102, 255, 1)",
16201+
"E turtle": "rgba(255, 102, 255, 1)",
16202+
"F mammals": "rgba(150, 150, 41, 1)",
16203+
"F turtle": "rgba(150, 150, 41, 1)",
16204+
"F squamates": "rgba(150, 150, 41, 1)",
16205+
"G squamates": "rgba(48, 214, 214, 1)",
16206+
"V mammals": "rgba(178, 102, 255, 1)",
1620716207
"pre-V": "rgba(138, 138, 138, 1)",
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"pre g2": "rgba(204, 132, 0, 1)"
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},
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"gene": {
16211-
"Pla2g2": "rgba(255, 102, 102, 0.8)",
16212-
"Pla2g2A": "rgba(255, 102, 102, 0.8)",
16213-
"Pla2g2B": "rgba(255, 102, 102, 0.8)",
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"Pla2g2C": "rgba(255, 102, 102, 0.8)",
16215-
"Pla2g2D1": "rgba(102, 255, 102, 0.8)",
16216-
"Pla2g2D2": "rgba(102, 255, 102, 0.8)",
16217-
"Pla2g2D3": "rgba(102, 255, 102, 0.8)",
16218-
"Pla2g2E": "rgba(102, 178, 255, 0.8)",
16219-
"Pla2g2F": "rgba(255, 178, 102, 0.8)",
16220-
"Pla2g2G": "rgba(255, 102, 255, 0.8)",
16221-
"Pla2g2G0": "rgba(255, 102, 255, 0.8)",
16222-
"Pla2g2Ga": "rgba(255, 102, 255, 0.8)",
16223-
"Pla2g2Gb": "rgba(255, 102, 255, 0.8)",
16224-
"Pla2g2Gc": "rgba(255, 102, 255, 0.8)",
16225-
"Pla2g2Gk": "rgba(255, 102, 255, 0.8)",
16226-
"Pla2g2V": "rgba(178, 102, 255, 0.8)",
16227-
"Pla2g2V1": "rgba(178, 102, 255, 0.8)",
16228-
"Pla2g2V2": "rgba(178, 102, 255, 0.8)"
16211+
"Pla2g2": "rgba(255, 102, 102, 1)",
16212+
"Pla2g2A": "rgba(255, 102, 102, 1)",
16213+
"Pla2g2B": "rgba(255, 102, 102, 1)",
16214+
"Pla2g2C": "rgba(255, 102, 102, 1)",
16215+
"Pla2g2D1": "rgba(102, 255, 102, 1)",
16216+
"Pla2g2D2": "rgba(102, 255, 102, 1)",
16217+
"Pla2g2D3": "rgba(102, 255, 102, 1)",
16218+
"Pla2g2E": "rgba(102, 178, 255, 1)",
16219+
"Pla2g2F": "rgba(255, 178, 102, 1)",
16220+
"Pla2g2G": "rgba(255, 102, 255, 1)",
16221+
"Pla2g2G0": "rgba(255, 102, 255, 1)",
16222+
"Pla2g2Ga": "rgba(255, 102, 255, 1)",
16223+
"Pla2g2Gb": "rgba(255, 102, 255, 1)",
16224+
"Pla2g2Gc": "rgba(255, 102, 255, 1)",
16225+
"Pla2g2Gk": "rgba(255, 102, 255, 1)",
16226+
"Pla2g2V": "rgba(178, 102, 255, 1)",
16227+
"Pla2g2V1": "rgba(178, 102, 255, 1)",
16228+
"Pla2g2V2": "rgba(178, 102, 255, 1)"
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}
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},
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"marker_shapes": {

‎data/Pla2g2/protspace_files/Pla2g2_noTransperancy.json

-46,378
This file was deleted.

‎data/Pla2g2/style.json

+36-36
Original file line numberDiff line numberDiff line change
@@ -1,28 +1,28 @@
11
{
22
"group": {
33
"colors": {
4-
"A mammals": "rgba(255, 102, 102, 0.8)",
5-
"B birds": "rgba(255, 178, 102, 0.8)",
6-
"C birds": "rgba(108, 156, 204, 0.8)",
7-
"C crocodile": "rgba(108, 156, 204, 0.8)",
8-
"C mammals": "rgba(108, 156, 204, 0.8)",
9-
"D birds": "rgba(102, 204, 102, 0.8)",
10-
"D mammals": "rgba(102, 204, 102, 0.8)",
4+
"A mammals": "rgba(255, 102, 102, 1)",
5+
"B birds": "rgba(255, 178, 102, 1)",
6+
"C birds": "rgba(108, 156, 204, 1)",
7+
"C crocodile": "rgba(108, 156, 204, 1)",
8+
"C mammals": "rgba(108, 156, 204, 1)",
9+
"D birds": "rgba(102, 204, 102, 1)",
10+
"D mammals": "rgba(102, 204, 102, 1)",
1111
"D squamates": "rgba(204, 255, 204, 1)",
1212
"D1 reptilia": "rgba(125, 232, 125, 1)",
1313
"D2 reptilia": "rgba(61, 194, 61, 1)",
1414
"D3 reptilia": "rgba(61, 92, 61, 1)",
15-
"E birds": "rgba(255, 102, 255, 0.8)",
16-
"E crocodile": "rgba(255, 102, 255, 0.8)",
17-
"E mammals": "rgba(255, 102, 255, 0.8)",
18-
"E serpentes": "rgba(255, 102, 255, 0.8)",
19-
"E squamates": "rgba(255, 102, 255, 0.8)",
20-
"E turtle": "rgba(255, 102, 255, 0.8)",
21-
"F mammals": "rgba(150, 150, 41, 0.8)",
22-
"F turtle": "rgba(150, 150, 41, 0.8)",
23-
"F squamates": "rgba(150, 150, 41, 0.8)",
24-
"G squamates": "rgba(48, 214, 214, 0.8)",
25-
"V mammals": "rgba(178, 102, 255, 0.8)",
15+
"E birds": "rgba(255, 102, 255, 1)",
16+
"E crocodile": "rgba(255, 102, 255, 1)",
17+
"E mammals": "rgba(255, 102, 255, 1)",
18+
"E serpentes": "rgba(255, 102, 255, 1)",
19+
"E squamates": "rgba(255, 102, 255, 1)",
20+
"E turtle": "rgba(255, 102, 255, 1)",
21+
"F mammals": "rgba(150, 150, 41, 1)",
22+
"F turtle": "rgba(150, 150, 41, 1)",
23+
"F squamates": "rgba(150, 150, 41, 1)",
24+
"G squamates": "rgba(48, 214, 214, 1)",
25+
"V mammals": "rgba(178, 102, 255, 1)",
2626
"pre-V": "rgba(138, 138, 138, 1)",
2727
"pre g2": "rgba(204, 132, 0, 1)"
2828
},
@@ -49,24 +49,24 @@
4949
},
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"gene": {
5151
"colors": {
52-
"Pla2g2": "rgba(255, 102, 102, 0.8)",
53-
"Pla2g2A": "rgba(255, 102, 102, 0.8)",
54-
"Pla2g2B": "rgba(255, 102, 102, 0.8)",
55-
"Pla2g2C": "rgba(255, 102, 102, 0.8)",
56-
"Pla2g2D1": "rgba(102, 255, 102, 0.8)",
57-
"Pla2g2D2": "rgba(102, 255, 102, 0.8)",
58-
"Pla2g2D3": "rgba(102, 255, 102, 0.8)",
59-
"Pla2g2E": "rgba(102, 178, 255, 0.8)",
60-
"Pla2g2F": "rgba(255, 178, 102, 0.8)",
61-
"Pla2g2G": "rgba(255, 102, 255, 0.8)",
62-
"Pla2g2G0": "rgba(255, 102, 255, 0.8)",
63-
"Pla2g2Ga": "rgba(255, 102, 255, 0.8)",
64-
"Pla2g2Gb": "rgba(255, 102, 255, 0.8)",
65-
"Pla2g2Gc": "rgba(255, 102, 255, 0.8)",
66-
"Pla2g2Gk": "rgba(255, 102, 255, 0.8)",
67-
"Pla2g2V": "rgba(178, 102, 255, 0.8)",
68-
"Pla2g2V1": "rgba(178, 102, 255, 0.8)",
69-
"Pla2g2V2": "rgba(178, 102, 255, 0.8)"
52+
"Pla2g2": "rgba(255, 102, 102, 1)",
53+
"Pla2g2A": "rgba(255, 102, 102, 1)",
54+
"Pla2g2B": "rgba(255, 102, 102, 1)",
55+
"Pla2g2C": "rgba(255, 102, 102, 1)",
56+
"Pla2g2D1": "rgba(102, 255, 102, 1)",
57+
"Pla2g2D2": "rgba(102, 255, 102, 1)",
58+
"Pla2g2D3": "rgba(102, 255, 102, 1)",
59+
"Pla2g2E": "rgba(102, 178, 255, 1)",
60+
"Pla2g2F": "rgba(255, 178, 102, 1)",
61+
"Pla2g2G": "rgba(255, 102, 255, 1)",
62+
"Pla2g2G0": "rgba(255, 102, 255, 1)",
63+
"Pla2g2Ga": "rgba(255, 102, 255, 1)",
64+
"Pla2g2Gb": "rgba(255, 102, 255, 1)",
65+
"Pla2g2Gc": "rgba(255, 102, 255, 1)",
66+
"Pla2g2Gk": "rgba(255, 102, 255, 1)",
67+
"Pla2g2V": "rgba(178, 102, 255, 1)",
68+
"Pla2g2V1": "rgba(178, 102, 255, 1)",
69+
"Pla2g2V2": "rgba(178, 102, 255, 1)"
7070
}
7171
}
7272
}

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