Release 1.5.0

* Added: Support for PROV-O (RDF) serialization and deserialization
* Added: `direction` option for `prov.dot.prov_to_dot`
* Added: `prov.graph.graph_to_prov` to convert a Networkx graph back to a `ProvDocument`
* Testing with Python 3.5
* Various minor bug fixes and improvements

Author: trungdong

AUTHORS.rst

@@ -10,6 +10,6 @@ Development Lead
 Contributors
 ------------
 
-* Sam Millar
-* Satrajit Ghosh
+* Satrajit Ghosh (:py:mod:`prov.serializers.provrdf` module)
 * Lion Krischer (:py:mod:`prov.serializers.provxml` module and Python 3 support)
+* Sam Millar

CONTRIBUTING.rst

@@ -24,14 +24,14 @@ If you are reporting a bug, please include:
 Fix Bugs
 ~~~~~~~~
 
-Look through the GitHub issues for bugs. Anything tagged with "bug"
-is open to whoever wants to implement it.
+Look through the GitHub `issues <https://github.com/trungdong/prov/issues>`_ for bugs.
+Anything tagged with "bug" is open to whoever wants to implement it.
 
 Implement Features
 ~~~~~~~~~~~~~~~~~~
 
-Look through the GitHub issues for features. Anything tagged with "feature"
-is open to whoever wants to implement it.
+Look through the GitHub `issues <https://github.com/trungdong/prov/issues>`_
+for features. Anything tagged with "feature" is open to whoever wants to implement it.
 
 Write Documentation
 ~~~~~~~~~~~~~~~~~~~
@@ -66,7 +66,7 @@ Ready to contribute? Here's how to set up `prov` for local development.
 
     $ mkvirtualenv prov
     $ cd prov/
-    $ python setup.py develop
+    $ pip install -r requirements-dev.txt
 
 4. Create a branch for local development::
 
@@ -80,8 +80,6 @@ Ready to contribute? Here's how to set up `prov` for local development.
     $ python setup.py test
     $ tox
 
-   To get flake8 and tox, just pip install them into your virtualenv.
-
 6. Commit your changes and push your branch to GitHub::
 
     $ git add .
@@ -99,10 +97,10 @@ Before you submit a pull request, check that it meets these guidelines:
 2. If the pull request adds functionality, the docs should be updated. Put
    your new functionality into a function with a docstring, and add the
    feature to the list in README.rst.
-3. The pull request should work for Python 2.6, 2.7, 3.3, 3.4, and for PyPy.
+3. The pull request should work for Python 2.7, 3.3, 3.4, 3.5, and for PyPy.
    Check https://travis-ci.org/trungdong/prov/pull_requests
    and make sure that the tests pass for all supported Python versions.
-   (See [pyenv](https://github.com/yyuu/pyenv) for help on setting up
+   (See `pyenv <https://github.com/yyuu/pyenv>`_ for help on setting up
    multiple versions of Python locally for testing.)
 
 Tips

HISTORY.rst

@@ -3,6 +3,14 @@
 History
 -------
 
+1.5.0 (2015-10-19)
+^^^^^^^^^^^^^^^^^^
+* Added: Support for `PROV-O <http://www.w3.org/TR/prov-o/>`_ (RDF) serialization and deserialization
+* Added: `direction` option for :py:meth:`prov.dot.prov_to_dot`
+* Added: :py:meth:`prov.graph.graph_to_prov` to convert a `MultiDiGraph <http://networkx.github.io/documentation/latest/reference/classes.multidigraph.html>`_ back to a :py:class:`~prov.model.ProvDocument`
+* Testing with Python 3.5
+* Various minor bug fixes and improvements
+
 1.4.0 (2015-08-13)
 ^^^^^^^^^^^^^^^^^^
 * Changed the type of qualified names to prov:QUALIFIED_NAME (fixed #68)

LICENSE

@@ -1,6 +1,6 @@
 The MIT License (MIT)
 
-Copyright (c) 2014 University of Southampton
+Copyright (c) 2014–2016 University of Southampton
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

MANIFEST.in

@@ -6,6 +6,8 @@ include README.rst
 include CHANGES.txt
 include prov/tests/json/*.json
 include prov/tests/unification/*.json
+include prov/tests/rdf/*.ttl
+include prov/tests/rdf/*.trig
 include prov/tests/xml/*.xml
 
 recursive-exclude * __pycache__

README.rst

@@ -26,18 +26,19 @@ Introduction
   :alt: License
 
 
-A library for W3C Provenance Data Model supporting PROV-JSON and PROV-XML import/export
+A library for W3C Provenance Data Model supporting PROV-O (RDF), PROV-XML, PROV-JSON import/export
 
 * Free software: MIT license
-* Documentation: http://prov.readthedocs.org.
+* Documentation: http://prov.readthedocs.io/.
 
 Features
 --------
 
 * An implementation of the `W3C PROV Data Model <http://www.w3.org/TR/prov-dm/>`_ in Python.
 * In-memory classes for PROV assertions, which can then be output as `PROV-N <http://www.w3.org/TR/prov-n/>`_
-* Serialization and deserializtion support: `PROV-JSON <http://www.w3.org/Submission/prov-json/>`_ and `PROV-XML <http://www.w3.org/TR/prov-xml/>`_.
+* Serialization and deserializtion support: `PROV-O <http://www.w3.org/TR/prov-o/>`_ (RDF), `PROV-XML <http://www.w3.org/TR/prov-xml/>`_ and `PROV-JSON <http://www.w3.org/Submission/prov-json/>`_.
 * Exporting PROV documents into various graphical formats (e.g. PDF, PNG, SVG).
+* Convert a PROV document to a `Networkx MultiDiGraph <http://networkx.github.io/documentation/latest/reference/classes.multidigraph.html>`_ and back.
 
 
 Uses

docs/prov.serializers.rst

@@ -25,6 +25,14 @@ prov.serializers.provn module
     :show-inheritance:
 
 
+prov.serializers.provrdf module
+-------------------------------
+
+.. automodule:: prov.serializers.provrdf
+    :members:
+    :show-inheritance:
+
+
 prov.serializers.provxml module
 -------------------------------
 

prov/__init__.py

@@ -3,7 +3,7 @@
 
 __author__ = 'Trung Dong Huynh'
 __email__ = '[email protected]'
-__version__ = '1.4.1.dev1'
+__version__ = '1.5.0'
 
 __all__ = ["Error", "model", "read"]
 

prov/dot.py

@@ -1,11 +1,11 @@
 """Graphical visualisation support for prov.model.
 
 This module produces graphical visualisation for provenanve graphs.
-Requires pydot module and Graphviz.
+Requires pydotplus module and Graphviz.
 
 References:
 
-* pydot Homepage: http://code.google.com/p/pydot/
+* pydotplus homepage: http://pydotplus.readthedocs.io/
 * Graphviz:       http://www.graphviz.org/
 * DOT Language:   http://www.graphviz.org/doc/info/lang.html
 
@@ -148,11 +148,9 @@ def prov_to_dot(bundle, show_nary=True, use_labels=False,
     :type name: :class:`ProvBundle`
     :param show_nary: shows all elements in n-ary relations.
     :type show_nary: bool
-    :param use_labels: uses the prov:label property of an element as its name
-    (instead of its identifier).
+    :param use_labels: uses the prov:label property of an element as its name (instead of its identifier).
     :type use_labels: bool
-    :param direction: specifies the direction of the graph. Valid values are
-    "BT" (default), "TB", "LR", "RL".
+    :param direction: specifies the direction of the graph. Valid values are "BT" (default), "TB", "LR", "RL".
     :param show_element_attributes: shows attributes of elements.
     :type show_element_attributes: bool
     :param show_relation_attributes: shows attributes of relations.

prov/graph.py

@@ -32,8 +32,7 @@ def prov_to_graph(prov_document):
     <http://networkx.github.io/documentation/latest/reference/classes.multidigraph.html>`_
     instance of the `NetworkX <https://networkx.github.io/>`_ library.
 
-    :param prov_document: The :class:`~prov.model.ProvDocument` instance to
-    convert.
+    :param prov_document: The :class:`~prov.model.ProvDocument` instance to convert.
     """
     g = nx.MultiDiGraph()
     unified = prov_document.unified()
@@ -63,6 +62,11 @@ def prov_to_graph(prov_document):
 
 
 def graph_to_prov(g):
+    """ Convert a `MultiDiGraph <http://networkx.github.io/documentation/latest/reference/classes.multidigraph.html>`_
+        back to a :class:`~prov.model.ProvDocument`.
+
+        :param g: The graph instance to convert.
+    """
     prov_doc = ProvDocument()
     for n in g.nodes_iter():
         if isinstance(n, ProvRecord) and n.bundle is not None:

requirements-dev.txt

@@ -0,0 +1,6 @@
+-r requirements.txt
+coverage
+flake8
+sphinx
+tox
+wheel

scripts/prov-compare

@@ -1,16 +1,16 @@
 #!/usr/bin/env python
 # encoding: utf-8
 """
-prov-compare -- Compare two PROV-JSON or PROV-XML files for equivalence
+prov-compare -- Compare two PROV-JSON, PROV-XML, or RDF (PROV-O) files for equivalence
 
 @author:     Trung Dong Huynh
 
-@copyright:  2015 University of Southampton, United Kingdom. All rights reserved.
+@copyright:  2016 University of Southampton, United Kingdom. All rights reserved.
 
-@license:    TBD
+@license:    MIT Licence
 
 @contact:    [email protected]
-@deffield    updated: 2015-06-16
+@deffield    updated: 2016-10-19
 """
 
 from argparse import ArgumentParser, RawDescriptionHelpFormatter, FileType
@@ -28,7 +28,7 @@ logger = logging.getLogger(__name__)
 __all__ = []
 __version__ = 0.1
 __date__ = '2015-06-16'
-__updated__ = '2015-06-16'
+__updated__ = '2016-10-19'
 
 DEBUG = 0
 TESTRUN = 0
@@ -62,7 +62,7 @@ def main(argv=None):  # IGNORE:C0111
     program_license = '''%s
 
   Created by Trung Dong Huynh on %s.
-  Copyright 2015 University of Southampton. All rights reserved.
+  Copyright 2016 University of Southampton. All rights reserved.
 
   Licensed under the MIT License
   https://github.com/trungdong/prov/blob/master/LICENSE

scripts/prov-convert

@@ -1,16 +1,16 @@
 #!/usr/bin/env python
 # encoding: utf-8
 """
-convert -- Convert PROV-JSON to PROV-N, PROV-XML, or graphical formats (SVG, PDF, PNG)
+convert -- Convert PROV-JSON to RDF, PROV-N, PROV-XML, or graphical formats (SVG, PDF, PNG)
 
 @author:     Trung Dong Huynh
 
-@copyright:  2015 University of Southampton, United Kingdom. All rights reserved.
+@copyright:  2016 University of Southampton, United Kingdom. All rights reserved.
 
-@license:    TBD
+@license:    MIT License
 
 @contact:    [email protected]
-@deffield    updated: 2014-03-14
+@deffield    updated: 2016-10-19
 """
 
 from argparse import ArgumentParser, RawDescriptionHelpFormatter, FileType
@@ -29,17 +29,17 @@ logger = logging.getLogger(__name__)
 __all__ = []
 __version__ = 0.1
 __date__ = '2014-03-14'
-__updated__ = '2015-02-03'
+__updated__ = '2016-10-19'
 
 DEBUG = 0
 TESTRUN = 0
 PROFILE = 0
 
-GRAPHVIZ_SUPPORTED_FORMATS = set([
+GRAPHVIZ_SUPPORTED_FORMATS = {
     'bmp', 'canon', 'cmap', 'cmapx', 'cmapx_np', 'dot', 'eps', 'fig', 'gtk', 'gv', 'ico', 'imap', 'imap_np', 'ismap',
     'jpe', 'jpeg', 'jpg', 'pdf', 'plain', 'plain-ext', 'png', 'ps', 'ps2', 'svg', 'svgz', 'tif', 'tiff', 'tk',
     'vml', 'vmlz', 'x11', 'xdot', 'xlib'
-])
+}
 
 
 @six.python_2_unicode_compatible
@@ -88,7 +88,7 @@ def main(argv=None):  # IGNORE:C0111
     program_license = '''%s
 
   Created by Trung Dong Huynh on %s.
-  Copyright 2015 University of Southampton. All rights reserved.
+  Copyright 2016 University of Southampton. All rights reserved.
 
   Licensed under the MIT License
   https://github.com/trungdong/prov/blob/master/LICENSE

setup.py

@@ -24,9 +24,9 @@
 
 setup(
     name='prov',
-    version='1.4.1.dev1',
+    version='1.5.0',
     description='A library for W3C Provenance Data Model supporting PROV-JSON, '
-                'PROV-XML and PROV-O',
+                'PROV-XML and PROV-O (RDF)',
     long_description=readme + '\n\n' + history,
     author='Trung Dong Huynh',
     author_email='[email protected]',
@@ -59,6 +59,7 @@
         "Programming Language :: Python :: 3",
         'Programming Language :: Python :: 3.3',
         'Programming Language :: Python :: 3.4',
+        'Programming Language :: Python :: 3.5',
         "Programming Language :: Python :: Implementation :: CPython",
         "Programming Language :: Python :: Implementation :: PyPy",
         'Topic :: Scientific/Engineering :: Information Analysis',