After 48 hours my jobs keep timing out with no obvious error messages and no output files created. Here is my script that I use on the TACC Lonestar 5 server:
#!/bin/bash
#SBATCH -J pporthread4
#SBATCH -o pporthread4.o%j
#SBATCH -e pporthread4.e%j
#SBATCH -N 2
#SBATCH -n 32
#SBATCH -p largemem512GB
#SBATCH -t 48:00:00
Other commands must follow all #SBATCH directives...
module load intel/18.0.2
module load remora/1.8.2
module load TACC-largemem
module load bowtie/2.3.4
module load trinityrnaseq/2.8.4
run the executable named a.out
remora Trinity --normalize_reads --seqType fq --grid_node_CPU 32 --grid_node_max_memory 500G --max_memory 500G --SS_lib_type FR --left UVI_120_F_paired.fq.gz,UVI_122_F_paired.fq.gz,UVI_124_F_paired.fq.gz --right UVI_120_R_paired.fq.gz,UVI_122_R_paired.fq.gz,UVI_124_R_paired.fq.gz --CPU 32
The only error I get is:
"Host key verification failed."
I have no idea what's going on here. Can someone lead me in the right direction?
After 48 hours my jobs keep timing out with no obvious error messages and no output files created. Here is my script that I use on the TACC Lonestar 5 server:
#!/bin/bash
#SBATCH -J pporthread4
#SBATCH -o pporthread4.o%j
#SBATCH -e pporthread4.e%j
#SBATCH -N 2
#SBATCH -n 32
#SBATCH -p largemem512GB
#SBATCH -t 48:00:00
Other commands must follow all #SBATCH directives...
module load intel/18.0.2
module load remora/1.8.2
module load TACC-largemem
module load bowtie/2.3.4
module load trinityrnaseq/2.8.4
run the executable named a.out
remora Trinity --normalize_reads --seqType fq --grid_node_CPU 32 --grid_node_max_memory 500G --max_memory 500G --SS_lib_type FR --left UVI_120_F_paired.fq.gz,UVI_122_F_paired.fq.gz,UVI_124_F_paired.fq.gz --right UVI_120_R_paired.fq.gz,UVI_122_R_paired.fq.gz,UVI_124_R_paired.fq.gz --CPU 32
The only error I get is:
"Host key verification failed."
I have no idea what's going on here. Can someone lead me in the right direction?