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I can reproduce a similar error.
When running python -c "import malis_large_volumes" from the root of this repository, I get the following error:
ImportError: cannot import name 'pairs_cython' from partially initialized module 'malis_large_volumes' (most likely due to a circular import)
But trying to do the same from any directory outside of this repository is no problem. @coder-people could you try whether that was your problem too?
By the way, while going through the code I could not detect any circular imports, even though that's what it says in my error message. I suppose this is a cython-specific problem. I found a popular repository that has a similar problem with cython: zeromq/pyzmq#1460
ModuleNotFoundError: No module named 'pairs_cython'
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