diff --git a/README.md b/README.md index 0dfc586..f8cebd8 100644 --- a/README.md +++ b/README.md @@ -2,39 +2,41 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2024-11-17 12:10:55 UTC +2024-11-18 12:11:52 UTC | Repo | Stars | Subscribers | Issues | Forks | Status | Commit | |:----------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 777 | 19 | 73 | 183 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292800) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292810) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292801) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292802) | 343c7e | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 777 | 20 | 73 | 183 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292800) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292810) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292801) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292802) | 343c7e | | [theislab/scvelo](https://github.com/theislab/scvelo) | 418 | 13 | 60 | 102 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835313) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835314) | 22b6e7 | | [theislab/scvelo](https://github.com/theislab/scvelo) | 418 | 13 | 60 | 102 | [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/8317755189) | b2f31b | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 348 | 8 | 19 | 46 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/11769788746) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/11769878305) | 82248b | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 348 | 8 | 19 | 46 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/11883492254) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/11883583396) | 82248b | | [theislab/cellrank](https://github.com/theislab/cellrank) | 348 | 8 | 19 | 46 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10872921434) | b5e993 | | [theislab/scib](https://github.com/theislab/scib) | 303 | 14 | 42 | 63 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/10287985783) | 5547cd | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 232 | 5 | 49 | 19 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/11838885123) | 5336a2 | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 232 | 5 | 49 | 19 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/10306217903) | e0e081 | -| [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 150 | 5 | 14 | 28 | [![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/11791925021) | 37d531 | +| [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 150 | 5 | 13 | 28 | [![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/11791925021) | 37d531 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 134 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/9457340256) | 55bcbb | | [theislab/sfaira](https://github.com/theislab/sfaira) | 134 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) | 5fcf93 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 134 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) | ceb14c | | [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 129 | 7 | 13 | 16 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/11795251107) | ebddb6 | | [theislab/moscot](https://github.com/theislab/moscot) | 115 | 3 | 43 | 9 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/10212768708) | 36d93b | +| [theislab/moscot](https://github.com/theislab/moscot) | 115 | 3 | 43 | 9 | [![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/11883505228) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/11883437164) | ed4824 | | [theislab/ncem](https://github.com/theislab/ncem) | 102 | 6 | 28 | 13 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | -| [theislab/graphcompass](https://github.com/theislab/graphcompass) | 33 | 2 | 1 | 0 | [![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) | 7c4551 | +| [theislab/graphcompass](https://github.com/theislab/graphcompass) | 34 | 2 | 1 | 0 | [![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) | 7c4551 | | [theislab/mubind](https://github.com/theislab/mubind) | 28 | 3 | 29 | 0 | [![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10632591185) | 3f62f8 | | [theislab/hadge](https://github.com/theislab/hadge) | 24 | 3 | 14 | 6 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | -| [theislab/spapros](https://github.com/theislab/spapros) | 23 | 3 | 13 | 6 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/11874852075) | e8a37c | +| [theislab/spapros](https://github.com/theislab/spapros) | 23 | 3 | 13 | 6 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/11884140291) | e8a37c | | [theislab/spapros](https://github.com/theislab/spapros) | 23 | 3 | 13 | 6 | [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/11784217131) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/11784217134) | fc6cf6 | | [theislab/multimil](https://github.com/theislab/multimil) | 18 | 5 | 5 | 3 | [![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/11870932723) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/11870932729) | c721ba | | [theislab/geome](https://github.com/theislab/geome) | 16 | 3 | 3 | 4 | [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169) | 402a0a | +| [theislab/multigrate](https://github.com/theislab/multigrate) | 15 | 3 | 7 | 6 | [![](https://github.com/theislab/multigrate/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multigrate/actions/runs/11890253196) [![](https://github.com/theislab/multigrate/workflows/Test/badge.svg)](https://github.com/theislab/multigrate/actions/runs/11890253201) | fd6c1a | | [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 6 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/11793773567) | 5e59a6 | | [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 8 | 1 | 0 | 1 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963288) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963242) | 8020e7 | | [theislab/DRVI](https://github.com/theislab/DRVI) | 7 | 1 | 0 | 0 | [![](https://github.com/theislab/DRVI/workflows/Check%20Build/badge.svg)](https://github.com/theislab/DRVI/actions/runs/11800404797) [![](https://github.com/theislab/DRVI/workflows/Test/badge.svg)](https://github.com/theislab/DRVI/actions/runs/11850569208) | 4d9d01 | -| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 7 | 1 | 6 | 3 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/11769838887) | 210765 | +| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 7 | 1 | 6 | 3 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/11883541221) | 210765 | | [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | | [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 6 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) | e441a5 | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 2 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/11878648662) | 9236ed | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 2 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/11892012183) | 05618b | | [theislab/spatialdata-db](https://github.com/theislab/spatialdata-db) | 1 | 1 | 25 | 0 | [![](https://github.com/theislab/spatialdata-db/workflows/Check%20Build/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11362121634) [![](https://github.com/theislab/spatialdata-db/workflows/Test/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11850585189) | 5fc4ad | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20idtrack%20Package/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702245) [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702249) [![](https://github.com/theislab/idtrack/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702241) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702236) [![](https://github.com/theislab/idtrack/workflows/Run%20idtrack%20Tests/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702246) | ec9e9f | @@ -45,7 +47,7 @@ GitHub Dashboard | [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1395 | 30 | 21 | 459 | | [theislab/scarches](https://github.com/theislab/scarches) | 335 | 12 | 53 | 51 | | [theislab/scgen](https://github.com/theislab/scgen) | 266 | 9 | 28 | 56 | -| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 255 | 13 | 28 | 28 | +| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 257 | 13 | 28 | 28 | | [theislab/dca](https://github.com/theislab/dca) | 246 | 11 | 32 | 72 | | [theislab/paga](https://github.com/theislab/paga) | 208 | 10 | 24 | 33 | | [theislab/diffxpy](https://github.com/theislab/diffxpy) | 193 | 7 | 108 | 23 | @@ -74,7 +76,6 @@ GitHub Dashboard | [theislab/Covid_meta_analysis](https://github.com/theislab/Covid_meta_analysis) | 24 | 8 | 2 | 11 | | [theislab/interactive_plotting](https://github.com/theislab/interactive_plotting) | 21 | 4 | 11 | 7 | | [theislab/scgen-reproducibility](https://github.com/theislab/scgen-reproducibility) | 21 | 4 | 6 | 8 | -| [theislab/multigrate](https://github.com/theislab/multigrate) | 15 | 3 | 7 | 6 | | [theislab/neural_organoid_atlas](https://github.com/theislab/neural_organoid_atlas) | 15 | 5 | 2 | 1 | | [theislab/campa](https://github.com/theislab/campa) | 14 | 4 | 6 | 4 | | [theislab/cellrank_reproducibility](https://github.com/theislab/cellrank_reproducibility) | 14 | 2 | 0 | 8 | @@ -135,6 +136,7 @@ GitHub Dashboard | [theislab/feature-attribution-sc](https://github.com/theislab/feature-attribution-sc) | 4 | 2 | 8 | 1 | | [theislab/LODE](https://github.com/theislab/LODE) | 4 | 2 | 9 | 0 | | [theislab/perturbation-metrics](https://github.com/theislab/perturbation-metrics) | 4 | 2 | 1 | 0 | +| [theislab/task-dge-perturbation-prediction-analysis](https://github.com/theislab/task-dge-perturbation-prediction-analysis) | 4 | 2 | 0 | 1 | | [theislab/cellrank_reproducibility_preprint](https://github.com/theislab/cellrank_reproducibility_preprint) | 3 | 2 | 0 | 0 | | [theislab/extended-single-cell-best-practices-container](https://github.com/theislab/extended-single-cell-best-practices-container) | 3 | 4 | 2 | 1 | | [theislab/moscot-framework_reproducibility](https://github.com/theislab/moscot-framework_reproducibility) | 3 | 2 | 2 | 0 | @@ -144,7 +146,6 @@ GitHub Dashboard | [theislab/sc_analysis_template](https://github.com/theislab/sc_analysis_template) | 3 | 3 | 0 | 0 | | [theislab/spatial_atlas_ssl](https://github.com/theislab/spatial_atlas_ssl) | 3 | 2 | 0 | 0 | | [theislab/svaeligr](https://github.com/theislab/svaeligr) | 3 | 3 | 0 | 0 | -| [theislab/task-dge-perturbation-prediction-analysis](https://github.com/theislab/task-dge-perturbation-prediction-analysis) | 3 | 2 | 0 | 0 | | [theislab/txsim](https://github.com/theislab/txsim) | 3 | 2 | 40 | 0 | | [theislab/2020_iPS_Lung_Differentiation](https://github.com/theislab/2020_iPS_Lung_Differentiation) | 2 | 5 | 0 | 2 | | [theislab/2021_Aliluev_Tritschler_gut_HFD](https://github.com/theislab/2021_Aliluev_Tritschler_gut_HFD) | 2 | 4 | 0 | 1 | diff --git a/index.html b/index.html index 50fa8eb..fd505ab 100644 --- a/index.html +++ b/index.html @@ -49,7 +49,7 @@

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Repos without Github Actions

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Repos without Github Actions

- - - - - - - - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + + + + + + + + @@ -1107,552 +1127,545 @@

Repos without Github Actions

- - - - - - - - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + diff --git a/repos.csv b/repos.csv index 033e07d..ef2ec00 100644 --- a/repos.csv +++ b/repos.csv @@ -54,7 +54,7 @@ theislab,batchglm,theislab/batchglm,27,3,47,9,FALSE,https://github.com/theislab/ theislab,bindome,theislab/bindome,1,3,5,1,FALSE,https://github.com/theislab/bindome,1,NA,NA,NA theislab,campa,theislab/campa,14,4,6,4,FALSE,https://github.com/theislab/campa,14,NA,NA,NA theislab,campa_ana,theislab/campa_ana,2,4,0,0,FALSE,https://github.com/theislab/campa_ana,2,NA,NA,NA -theislab,cellrank,theislab/cellrank,348,8,19,46,FALSE,https://github.com/theislab/cellrank,348,82248b266e6f3b8508c96c81b1870a65692ac82e,Parallelize CI jobs,[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/11769788746) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/11769878305) +theislab,cellrank,theislab/cellrank,348,8,19,46,FALSE,https://github.com/theislab/cellrank,348,82248b266e6f3b8508c96c81b1870a65692ac82e,Parallelize CI jobs,[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/11883492254) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/11883583396) theislab,cellrank,theislab/cellrank,348,8,19,46,FALSE,https://github.com/theislab/cellrank,348,b5e9933b1440a6a0721f97b797cd9209d1812f90,"Fix adata copy (coarse transition matrix) (#1223) * chore: bump ruff pre-commit hook version @@ -200,9 +200,9 @@ theislab,gastrulation_analysis,theislab/gastrulation_analysis,10,4,0,1,FALSE,htt theislab,geome,theislab/geome,16,3,3,4,FALSE,https://github.com/theislab/geome,16,402a0a8cdb442fee8666416e5f163c4098fa0c07,"Merge pull request #55 from theislab/fix/toarray Fix Sparse "".A"" Not Found",[![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169) -theislab,gh-dashboard,theislab/gh-dashboard,2,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,2,9236eda46f903a7bcfce0324272d119f07173930,[status] 2024-11-16 12:12:24 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/11878648662) +theislab,gh-dashboard,theislab/gh-dashboard,2,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,2,05618b9792bc773cdc4d179d0908cae7a38606ab,[status] 2024-11-17 12:12:09 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/11892012183) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA -theislab,graphcompass,theislab/graphcompass,33,2,1,0,FALSE,https://github.com/theislab/graphcompass,33,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) +theislab,graphcompass,theislab/graphcompass,34,2,1,0,FALSE,https://github.com/theislab/graphcompass,34,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) theislab,greatpy,theislab/greatpy,8,3,4,0,FALSE,https://github.com/theislab/greatpy,8,NA,NA,NA theislab,gut_lineage,theislab/gut_lineage,2,3,0,3,FALSE,https://github.com/theislab/gut_lineage,2,NA,NA,NA theislab,hadge,theislab/hadge,24,3,14,6,FALSE,https://github.com/theislab/hadge,24,1ed105ed192e66898ff7a305a2c21f5b8c81bcf7,fix gdown bug,[![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) @@ -223,19 +223,22 @@ theislab,masterpraktikum_ssl_segmentation,theislab/masterpraktikum_ssl_segmentat theislab,moscot,theislab/moscot,115,3,43,9,FALSE,https://github.com/theislab/moscot,115,36d93bf11a407023e622b21aabca032c1885d249,"Merge pull request #737 from theislab/fix/linting_attr Fixing Linting and Plotting Error",[![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/10212768708) +theislab,moscot,theislab/moscot,115,3,43,9,FALSE,https://github.com/theislab/moscot,115,ed48242a270e23fdcaba513235b71c2cce997f33,"Merge pull request #762 from theislab/pre-commit-ci-update-config + +[pre-commit.ci] pre-commit autoupdate",[![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/11883505228) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/11883437164) theislab,moscot-framework_reproducibility,theislab/moscot-framework_reproducibility,3,2,2,0,FALSE,https://github.com/theislab/moscot-framework_reproducibility,3,NA,NA,NA theislab,moscot_benchmarks,theislab/moscot_benchmarks,2,2,1,0,FALSE,https://github.com/theislab/moscot_benchmarks,2,NA,NA,NA theislab,moscot_not,theislab/moscot_not,3,2,8,1,FALSE,https://github.com/theislab/moscot_not,3,NA,NA,NA theislab,moscot_notebooks,theislab/moscot_notebooks,7,1,6,3,FALSE,https://github.com/theislab/moscot_notebooks,7,2107658c3ede74ec7c818051bba518143d05db82,"Merge pull request #81 from theislab/add/geodesic_costs -example on cost geodesic on current example for custom costs",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/11769838887) +example on cost geodesic on current example for custom costs",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/11883541221) theislab,moslin,theislab/moslin,11,1,0,1,FALSE,https://github.com/theislab/moslin,11,NA,NA,NA theislab,mouse_cross-condition_pancreatic_islet_atlas,theislab/mouse_cross-condition_pancreatic_islet_atlas,7,2,0,3,FALSE,https://github.com/theislab/mouse_cross-condition_pancreatic_islet_atlas,7,NA,NA,NA theislab,mubind,theislab/mubind,28,3,29,0,FALSE,https://github.com/theislab/mubind,28,3f62f838470ebc499540ff54fb8d074363abd7b6,Dropbox URL (typo),[![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10632591185) theislab,mubind-benchmark,theislab/mubind-benchmark,0,2,19,0,FALSE,https://github.com/theislab/mubind-benchmark,0,NA,NA,NA theislab,multicpa,theislab/multicpa,13,2,1,2,FALSE,https://github.com/theislab/multicpa,13,NA,NA,NA theislab,multicpa-reproducibility,theislab/multicpa-reproducibility,0,2,0,0,FALSE,https://github.com/theislab/multicpa-reproducibility,0,NA,NA,NA -theislab,multigrate,theislab/multigrate,15,3,7,6,FALSE,https://github.com/theislab/multigrate,15,NA,NA,NA +theislab,multigrate,theislab/multigrate,15,3,7,6,FALSE,https://github.com/theislab/multigrate,15,fd6c1a0978a93044e9b04a3509ceb0f7f8e22d35,pre-commit updates,[![](https://github.com/theislab/multigrate/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multigrate/actions/runs/11890253196) [![](https://github.com/theislab/multigrate/workflows/Test/badge.svg)](https://github.com/theislab/multigrate/actions/runs/11890253201) theislab,multigrate_reproducibility,theislab/multigrate_reproducibility,2,1,0,0,FALSE,https://github.com/theislab/multigrate_reproducibility,2,NA,NA,NA theislab,multimil,theislab/multimil,18,5,5,3,FALSE,https://github.com/theislab/multimil,18,c721babcaef2f9367cf0bea5e6ed07ef422afb6b,"Merge pull request #73 from theislab/mmq2r_benchmark @@ -337,7 +340,7 @@ theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theis theislab,sfaira_benchmarks,theislab/sfaira_benchmarks,0,3,0,0,FALSE,https://github.com/theislab/sfaira_benchmarks,0,NA,NA,NA theislab,sfaira_extension,theislab/sfaira_extension,0,3,1,0,FALSE,https://github.com/theislab/sfaira_extension,0,NA,NA,NA theislab,sfaira_tutorials,theislab/sfaira_tutorials,6,4,4,2,FALSE,https://github.com/theislab/sfaira_tutorials,6,NA,NA,NA -theislab,single-cell-best-practices,theislab/single-cell-best-practices,777,19,73,183,FALSE,https://github.com/theislab/single-cell-best-practices,777,343c7e0a9fa9dbe98283faba070cf1426dab71f3,"Fixed some typos (#303) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,777,20,73,183,FALSE,https://github.com/theislab/single-cell-best-practices,777,343c7e0a9fa9dbe98283faba070cf1426dab71f3,"Fixed some typos (#303) * fix additional ""does"" @@ -364,12 +367,12 @@ theislab,single-cell-best-practices,theislab/single-cell-best-practices,777,19,7 * fix typo * fix typo",[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292800) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292810) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292801) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292802) -theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,255,13,28,28,FALSE,https://github.com/theislab/single-cell-transformer-papers,255,NA,NA,NA +theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,257,13,28,28,FALSE,https://github.com/theislab/single-cell-transformer-papers,257,NA,NA,NA theislab,single-cell-tutorial,theislab/single-cell-tutorial,1395,30,21,459,FALSE,https://github.com/theislab/single-cell-tutorial,1395,NA,NA,NA theislab,singlecell_proteomics,theislab/singlecell_proteomics,5,5,6,3,FALSE,https://github.com/theislab/singlecell_proteomics,5,NA,NA,NA theislab,spapros,theislab/spapros,23,3,13,6,FALSE,https://github.com/theislab/spapros,23,e8a37c9e78039920a0792fc04f426ab062dbbf88,"Merge pull request #321 from theislab/patch_precommit -pre commit correction of readthedocs.yml",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/11874852075) +pre commit correction of readthedocs.yml",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/11884140291) theislab,spapros,theislab/spapros,23,3,13,6,FALSE,https://github.com/theislab/spapros,23,fc6cf6606de13ae8ba7c1f7ae1e8d350c70e7f13,"[DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.12.2 Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.14 to 1.12.2. @@ -398,7 +401,7 @@ theislab,ssl_in_scg,theislab/ssl_in_scg,5,1,0,1,FALSE,https://github.com/theisla theislab,superexacttestpy,theislab/superexacttestpy,10,2,3,0,FALSE,https://github.com/theislab/superexacttestpy,10,NA,NA,NA theislab,svaeligr,theislab/svaeligr,3,3,0,0,FALSE,https://github.com/theislab/svaeligr,3,NA,NA,NA theislab,tardis,theislab/tardis,1,1,0,1,FALSE,https://github.com/theislab/tardis,1,NA,NA,NA -theislab,task-dge-perturbation-prediction-analysis,theislab/task-dge-perturbation-prediction-analysis,3,2,0,0,FALSE,https://github.com/theislab/task-dge-perturbation-prediction-analysis,3,NA,NA,NA +theislab,task-dge-perturbation-prediction-analysis,theislab/task-dge-perturbation-prediction-analysis,4,2,0,1,FALSE,https://github.com/theislab/task-dge-perturbation-prediction-analysis,4,NA,NA,NA theislab,tcellmatch,theislab/tcellmatch,37,9,3,7,FALSE,https://github.com/theislab/tcellmatch,37,NA,NA,NA theislab,theislab.github.io,theislab/theislab.github.io,6,2,9,0,FALSE,https://github.com/theislab/theislab.github.io,6,NA,NA,NA theislab,tissue,theislab/tissue,2,3,0,0,FALSE,https://github.com/theislab/tissue,2,NA,NA,NA @@ -411,6 +414,6 @@ theislab,trvaep,theislab/trvaep,9,3,0,5,FALSE,https://github.com/theislab/trvaep theislab,txsim,theislab/txsim,3,2,40,0,FALSE,https://github.com/theislab/txsim,3,NA,NA,NA theislab,unbalanced_monge_maps_single_cell,theislab/unbalanced_monge_maps_single_cell,1,1,0,0,FALSE,https://github.com/theislab/unbalanced_monge_maps_single_cell,1,NA,NA,NA theislab,zebrafish_bipolarity,theislab/zebrafish_bipolarity,1,4,0,1,FALSE,https://github.com/theislab/zebrafish_bipolarity,1,NA,NA,NA -theislab,zellkonverter,theislab/zellkonverter,150,5,14,28,FALSE,https://github.com/theislab/zellkonverter,150,37d531152ef85e26bac2bacb484eea9c4060408f,"Merge pull request #128 from theislab/dependabot/github_actions/JamesIves/github-pages-deploy-action-4.6.9 +theislab,zellkonverter,theislab/zellkonverter,150,5,13,28,FALSE,https://github.com/theislab/zellkonverter,150,37d531152ef85e26bac2bacb484eea9c4060408f,"Merge pull request #128 from theislab/dependabot/github_actions/JamesIves/github-pages-deploy-action-4.6.9 Bump JamesIves/github-pages-deploy-action from 4.6.8 to 4.6.9",[![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/11791925021)
theislab/single-cell-best-practices 7771920 73 183 @@ -109,8 +109,8 @@

GitHub Dashboard

8 19 46 - + 82248b
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theislab/moscot1153439 +ed4824
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theislab/hadge 24 3 1ed105
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theislab/spapros 23 3 fc6cf6
theislab/multimil 18 5 c721ba
theislab/geome 16 3 402a0a
theislab/multigrate15376 +fd6c1a
theislab/scanpydoc 12 1 6 3 210765
2 0 09236ed05618b
theislab/spatialdata-db
theislab/single-cell-transformer-papers255257 13 28 28 8
theislab/multigrate15376
theislab/neural_organoid_atlas 15 5 2 1
theislab/campa 14 4 6 4
theislab/cellrank_reproducibility 14 2 0 8
theislab/DeepCollisionalCrossSection 14 5 1 6
theislab/multicpa 13 2 1 2
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theislab/scPoli_reproduce 13 3 2 4
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theislab/MetaMap 12 7 0 8
theislab/ncem_tutorials 12 4 6 0
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theislab/enrichment_analysis_celltype 9 5 0 4
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theislab/2022_Tritschler_pancreas_cross_species 4 3 0 1
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theislab/covid-perturbation 4 3 0 0
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theislab/LungInjuryRegeneration 2 8 0 0
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theislab/scanpy_squidpy_demo_2021 2 4 0 1
theislab/scPoli_legacy 2 5 0 0
theislab/tissue 2 3 0 0
theislab/2021_PRMT7_regulates_Monocyte_Extravasation 1 4 0 2
theislab/archmap_data 1 0 2 0
theislab/astrocytes_reprogramming_analysis 1 5 0 0
theislab/augurpy 1 2 10 0
theislab/autoencoderPS 1 3 0 2
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theislab/countae 1 4 0 0
theislab/DRVI_reproducibility 1 3 0 0
theislab/ehrapy-cli 1 3 0 0
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theislab/ifcseq 1 3 0 1
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theislab/transcription_factor_activity 1 1 5 1
theislab/unbalanced_monge_maps_single_cell 1 1 0 0
theislab/zebrafish_bipolarity 1 4 0 1
theislab/2015-grn-inference 0 2 0 0
theislab/2020_Inhibition_LTbetaR-signalling 0 4 0 3
theislab/2022_Bakhti_pancreas_Syt13 0 3 0 0
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