diff --git a/README.md b/README.md index 3c47c91..731d89b 100644 --- a/README.md +++ b/README.md @@ -2,45 +2,46 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2025-01-05 12:10:55 UTC +2025-01-06 12:11:02 UTC | Repo | Stars | Subscribers | Issues | Forks | Status | Commit | |:------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 811 | 19 | 74 | 195 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292800) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292810) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292801) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292802) | 343c7e | | [theislab/scvelo](https://github.com/theislab/scvelo) | 421 | 13 | 59 | 104 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835313) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/11127835314) [![](https://github.com/theislab/scvelo/workflows/Release/badge.svg)](https://github.com/theislab/scvelo/actions/runs/12231133032) | 22b6e7 | | [theislab/cellrank](https://github.com/theislab/cellrank) | 355 | 8 | 18 | 47 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/10872921434) | b5e993 | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 355 | 8 | 18 | 47 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12539910387) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12539991120) | bf27c9 | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 355 | 8 | 18 | 47 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12624236213) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12624325510) | bf27c9 | | [theislab/scib](https://github.com/theislab/scib) | 321 | 14 | 40 | 63 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/12436783802) [![](https://github.com/theislab/scib/workflows/Test/badge.svg)](https://github.com/theislab/scib/actions/runs/12436783809) | e614d3 | | [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 287 | 15 | 39 | 36 | [![](https://github.com/theislab/single-cell-transformer-papers/workflows/Document%20Generation/badge.svg)](https://github.com/theislab/single-cell-transformer-papers/actions/runs/12447562233) | 75797d | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 249 | 5 | 45 | 21 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12391531595) | 228ac1 | -| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 249 | 5 | 45 | 21 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12115165279) | c4721f | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 249 | 5 | 44 | 21 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12620616528) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12620616526) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12620616527) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12620616524) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12620616531) | 4903d6 | +| [theislab/ehrapy](https://github.com/theislab/ehrapy) | 249 | 5 | 44 | 21 | [![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12115165279) | c4721f | | [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 156 | 5 | 13 | 28 | [![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/12250677013) | 8358a4 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 135 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/9457340256) | 55bcbb | | [theislab/sfaira](https://github.com/theislab/sfaira) | 135 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672388) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672382) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672385) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/7285672384) | 5fcf93 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 135 | 8 | 167 | 11 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430) | ceb14c | | [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 130 | 7 | 13 | 16 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/12508212694) | f6b1bd | -| [theislab/moscot](https://github.com/theislab/moscot) | 119 | 3 | 36 | 9 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/12301003048) | 29764d | +| [theislab/moscot](https://github.com/theislab/moscot) | 119 | 3 | 37 | 9 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/12301003048) | 29764d | +| [theislab/moscot](https://github.com/theislab/moscot) | 119 | 3 | 37 | 9 | [![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/12624247939) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/12624181421) | 5e5bbb | | [theislab/ncem](https://github.com/theislab/ncem) | 104 | 6 | 28 | 13 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397) | d03a07 | | [theislab/DRVI](https://github.com/theislab/DRVI) | 34 | 1 | 3 | 3 | [![](https://github.com/theislab/DRVI/workflows/Test/badge.svg)](https://github.com/theislab/DRVI/actions/runs/12567383981) | fdc2eb | | [theislab/graphcompass](https://github.com/theislab/graphcompass) | 34 | 2 | 1 | 0 | [![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) | 7c4551 | -| [theislab/spapros](https://github.com/theislab/spapros) | 33 | 3 | 12 | 7 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12615405304) | 1ec08e | +| [theislab/spapros](https://github.com/theislab/spapros) | 33 | 3 | 12 | 7 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12624881816) | 1ec08e | | [theislab/spapros](https://github.com/theislab/spapros) | 33 | 3 | 12 | 7 | [![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589767) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589776) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589778) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589764) | 2f6c1a | | [theislab/mubind](https://github.com/theislab/mubind) | 28 | 3 | 29 | 0 | [![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10632591185) | 3f62f8 | | [theislab/hadge](https://github.com/theislab/hadge) | 24 | 3 | 14 | 6 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | | [theislab/multimil](https://github.com/theislab/multimil) | 20 | 5 | 6 | 3 | [![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/11870932723) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/12567396263) | c721ba | -| [theislab/regvelo](https://github.com/theislab/regvelo) | 18 | 2 | 0 | 1 | [![](https://github.com/theislab/regvelo/workflows/regvelo/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11323656087) | 619e02 | -| [theislab/regvelo](https://github.com/theislab/regvelo) | 18 | 2 | 0 | 1 | [![](https://github.com/theislab/regvelo/workflows/Release/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11307228307) | a98518 | +| [theislab/regvelo](https://github.com/theislab/regvelo) | 19 | 2 | 0 | 1 | [![](https://github.com/theislab/regvelo/workflows/regvelo/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11323656087) | 619e02 | +| [theislab/regvelo](https://github.com/theislab/regvelo) | 19 | 2 | 0 | 1 | [![](https://github.com/theislab/regvelo/workflows/Release/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11307228307) | a98518 | | [theislab/geome](https://github.com/theislab/geome) | 16 | 3 | 3 | 4 | [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169) | 402a0a | | [theislab/multigrate](https://github.com/theislab/multigrate) | 16 | 3 | 7 | 6 | [![](https://github.com/theislab/multigrate/workflows/Test/badge.svg)](https://github.com/theislab/multigrate/actions/runs/12567378461) | bd56d2 | | [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 6 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/12508212521) | 6e07d8 | | [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 9 | 1 | 2 | 2 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963288) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963242) | 8020e7 | -| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 8 | 1 | 7 | 4 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/12539952838) | 320930 | +| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 8 | 1 | 7 | 4 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/12624283480) | 320930 | | [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 7 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) | e441a5 | | [theislab/spapros-pipeline](https://github.com/theislab/spapros-pipeline) | 7 | 2 | 0 | 0 | [![](https://github.com/theislab/spapros-pipeline/workflows/Run%20Example/badge.svg)](https://github.com/theislab/spapros-pipeline/actions/runs/11988359512) | fe84cf | | [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | | [theislab/ehrdata](https://github.com/theislab/ehrdata) | 5 | 2 | 19 | 1 | [![](https://github.com/theislab/ehrdata/workflows/Test/badge.svg)](https://github.com/theislab/ehrdata/actions/runs/12567418449) | 80acdf | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 3 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12619305925) | d7dcf8 | -| [theislab/regvelo_reproducibility](https://github.com/theislab/regvelo_reproducibility) | 1 | 0 | 0 | 0 | [![](https://github.com/theislab/regvelo_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/regvelo_reproducibility/actions/runs/12596891042) [![](https://github.com/theislab/regvelo_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/regvelo_reproducibility/actions/runs/12596891045) | 549884 | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 3 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12632115313) | 185d28 | +| [theislab/regvelo_reproducibility](https://github.com/theislab/regvelo_reproducibility) | 2 | 0 | 0 | 0 | [![](https://github.com/theislab/regvelo_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/regvelo_reproducibility/actions/runs/12596891042) [![](https://github.com/theislab/regvelo_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/regvelo_reproducibility/actions/runs/12596891045) | 549884 | | [theislab/spatialdata-db](https://github.com/theislab/spatialdata-db) | 1 | 1 | 25 | 0 | [![](https://github.com/theislab/spatialdata-db/workflows/Check%20Build/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11362121634) [![](https://github.com/theislab/spatialdata-db/workflows/Test/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/12567397061) | 5fc4ad | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20idtrack%20Package/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702245) [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702249) [![](https://github.com/theislab/idtrack/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702241) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702236) [![](https://github.com/theislab/idtrack/workflows/Run%20idtrack%20Tests/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702246) | ec9e9f | | [theislab/troutpy](https://github.com/theislab/troutpy) | 0 | 1 | 1 | 0 | [![](https://github.com/theislab/troutpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/troutpy/actions/runs/12600069709) [![](https://github.com/theislab/troutpy/workflows/Test/badge.svg)](https://github.com/theislab/troutpy/actions/runs/12600069701) | f2d5d5 | @@ -49,8 +50,8 @@ GitHub Dashboard | Repo | Stars | Subscribers | Issues | Forks | |:------------------------------------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:| -| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1430 | 30 | 21 | 467 | -| [theislab/scarches](https://github.com/theislab/scarches) | 345 | 12 | 54 | 52 | +| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1430 | 30 | 21 | 468 | +| [theislab/scarches](https://github.com/theislab/scarches) | 346 | 12 | 54 | 52 | | [theislab/scgen](https://github.com/theislab/scgen) | 277 | 9 | 28 | 56 | | [theislab/dca](https://github.com/theislab/dca) | 252 | 11 | 32 | 71 | | [theislab/paga](https://github.com/theislab/paga) | 211 | 10 | 24 | 33 | @@ -58,8 +59,8 @@ GitHub Dashboard | [theislab/kBET](https://github.com/theislab/kBET) | 157 | 8 | 9 | 23 | | [theislab/scCODA](https://github.com/theislab/scCODA) | 154 | 9 | 8 | 24 | | [theislab/sc-pert](https://github.com/theislab/sc-pert) | 148 | 5 | 6 | 13 | -| [theislab/chemCPA](https://github.com/theislab/chemCPA) | 104 | 5 | 12 | 24 | -| [theislab/cpa](https://github.com/theislab/cpa) | 90 | 5 | 21 | 17 | +| [theislab/chemCPA](https://github.com/theislab/chemCPA) | 105 | 5 | 12 | 24 | +| [theislab/cpa](https://github.com/theislab/cpa) | 91 | 5 | 21 | 17 | | [theislab/destiny](https://github.com/theislab/destiny) | 80 | 5 | 31 | 11 | | [theislab/nicheformer](https://github.com/theislab/nicheformer) | 75 | 5 | 15 | 3 | | [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 67 | 7 | 16 | 27 | diff --git a/index.html b/index.html index 17be203..8ee8b9d 100644 --- a/index.html +++ b/index.html @@ -49,7 +49,7 @@

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Repos without Github Actions

- + - + diff --git a/repos.csv b/repos.csv index 4b88605..e948bb2 100644 --- a/repos.csv +++ b/repos.csv @@ -137,20 +137,20 @@ theislab,cellrank,theislab/cellrank,355,8,18,47,FALSE,https://github.com/theisla * Don't run on 3.13 (numba) -* Test on `macos-15`",[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12539910387) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12539991120) +* Test on `macos-15`",[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12624236213) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12624325510) theislab,cellrank2_reproducibility,theislab/cellrank2_reproducibility,9,1,2,2,FALSE,https://github.com/theislab/cellrank2_reproducibility,9,8020e797c0afcde5ba9b8c2f0182b1c25d56f11f,"Update paper references (#64) Update references to published paper.",[![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963288) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963242) theislab,cellrank_notebooks,theislab/cellrank_notebooks,6,4,1,5,FALSE,https://github.com/theislab/cellrank_notebooks,6,6777840bcc146924d208c0b9b02677da63620805,[ci skip] Fix pepy badge,[![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) theislab,cellrank_reproducibility,theislab/cellrank_reproducibility,14,2,1,8,FALSE,https://github.com/theislab/cellrank_reproducibility,14,NA,NA,NA theislab,cellrank_reproducibility_preprint,theislab/cellrank_reproducibility_preprint,3,2,0,0,FALSE,https://github.com/theislab/cellrank_reproducibility_preprint,3,NA,NA,NA -theislab,chemCPA,theislab/chemCPA,104,5,12,24,FALSE,https://github.com/theislab/chemCPA,104,NA,NA,NA +theislab,chemCPA,theislab/chemCPA,105,5,12,24,FALSE,https://github.com/theislab/chemCPA,105,NA,NA,NA theislab,collideseq_reproducibility,theislab/collideseq_reproducibility,0,2,0,0,FALSE,https://github.com/theislab/collideseq_reproducibility,0,NA,NA,NA theislab,consensus-clustering-evaluation,theislab/consensus-clustering-evaluation,0,4,0,0,FALSE,https://github.com/theislab/consensus-clustering-evaluation,0,NA,NA,NA theislab,countae,theislab/countae,1,4,0,0,FALSE,https://github.com/theislab/countae,1,NA,NA,NA theislab,covid-perturbation,theislab/covid-perturbation,4,3,0,0,FALSE,https://github.com/theislab/covid-perturbation,4,NA,NA,NA theislab,covid_macrophages_integration,theislab/covid_macrophages_integration,2,5,0,5,FALSE,https://github.com/theislab/covid_macrophages_integration,2,NA,NA,NA -theislab,cpa,theislab/cpa,90,5,21,17,FALSE,https://github.com/theislab/cpa,90,NA,NA,NA +theislab,cpa,theislab/cpa,91,5,21,17,FALSE,https://github.com/theislab/cpa,91,NA,NA,NA theislab,cpa-reproducibility,theislab/cpa-reproducibility,8,2,1,1,FALSE,https://github.com/theislab/cpa-reproducibility,8,NA,NA,NA theislab,cross_system_integration,theislab/cross_system_integration,11,2,11,2,FALSE,https://github.com/theislab/cross_system_integration,11,NA,NA,NA theislab,dali,theislab/dali,0,7,0,1,FALSE,https://github.com/theislab/dali,0,NA,NA,NA @@ -161,24 +161,14 @@ theislab,diffxpy,theislab/diffxpy,194,7,108,23,FALSE,https://github.com/theislab theislab,diffxpy_tutorials,theislab/diffxpy_tutorials,10,8,4,2,FALSE,https://github.com/theislab/diffxpy_tutorials,10,NA,NA,NA theislab,disent,theislab/disent,6,3,0,0,FALSE,https://github.com/theislab/disent,6,NA,NA,NA theislab,edgepy,theislab/edgepy,0,3,0,0,FALSE,https://github.com/theislab/edgepy,0,NA,NA,NA -theislab,ehrapy,theislab/ehrapy,249,5,45,21,FALSE,https://github.com/theislab/ehrapy,249,228ac1cf402623a2dd3f4c8b6ed26b37b2c7204b,"[pre-commit.ci] pre-commit autoupdate (#841) +theislab,ehrapy,theislab/ehrapy,249,5,44,21,FALSE,https://github.com/theislab/ehrapy,249,4903d6a6586ac3310320f8842eea59f257bcb504,"[pre-commit.ci] pre-commit autoupdate (#843) -* [pre-commit.ci] pre-commit autoupdate - updates: -- [github.com/astral-sh/ruff-pre-commit: v0.8.2 → v0.8.3](https://github.com/astral-sh/ruff-pre-commit/compare/v0.8.2...v0.8.3) - -* [pre-commit.ci] auto fixes from pre-commit.com hooks - -for more information, see https://pre-commit.ci +- [github.com/astral-sh/ruff-pre-commit: v0.8.3 → v0.8.4](https://github.com/astral-sh/ruff-pre-commit/compare/v0.8.3...v0.8.4) +- [github.com/pre-commit/mirrors-mypy: v1.13.0 → v1.14.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.13.0...v1.14.0) -* fix doc build - ---------- - -Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> -Co-authored-by: eroell ",[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12391531595) -theislab,ehrapy,theislab/ehrapy,249,5,45,21,FALSE,https://github.com/theislab/ehrapy,249,c4721fb128532782c9af134029a70a5e42293f18,"0.10.0 release +Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12620616528) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12620616526) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12620616527) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12620616524) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12620616531) +theislab,ehrapy,theislab/ehrapy,249,5,44,21,FALSE,https://github.com/theislab/ehrapy,249,c4721fb128532782c9af134029a70a5e42293f18,"0.10.0 release Signed-off-by: zethson ",[![](https://github.com/theislab/ehrapy/workflows/Release/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12115165279) theislab,ehrapy-cli,theislab/ehrapy-cli,1,3,0,0,FALSE,https://github.com/theislab/ehrapy-cli,1,NA,NA,NA @@ -242,7 +232,7 @@ theislab,gastrulation_analysis,theislab/gastrulation_analysis,10,4,0,1,FALSE,htt theislab,geome,theislab/geome,16,3,3,4,FALSE,https://github.com/theislab/geome,16,402a0a8cdb442fee8666416e5f163c4098fa0c07,"Merge pull request #55 from theislab/fix/toarray Fix Sparse "".A"" Not Found",[![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169) -theislab,gh-dashboard,theislab/gh-dashboard,3,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,3,d7dcf8a2e0a6327735f54ae0f7ea4c81ea2cdd10,[status] 2025-01-04 12:12:14 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12619305925) +theislab,gh-dashboard,theislab/gh-dashboard,3,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,3,185d2885c91b1fc3f1e1cccc22c70f8425e080be,[status] 2025-01-05 12:12:29 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12632115313) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,graphcompass,theislab/graphcompass,34,2,1,0,FALSE,https://github.com/theislab/graphcompass,34,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) theislab,greatpy,theislab/greatpy,10,3,4,0,FALSE,https://github.com/theislab/greatpy,10,NA,NA,NA @@ -262,15 +252,18 @@ theislab,jump-cpg0016-segmentation,theislab/jump-cpg0016-segmentation,8,1,2,0,FA theislab,kBET,theislab/kBET,157,8,9,23,FALSE,https://github.com/theislab/kBET,157,NA,NA,NA theislab,kbranches,theislab/kbranches,5,7,0,0,FALSE,https://github.com/theislab/kbranches,5,NA,NA,NA theislab,masterpraktikum_ssl_segmentation,theislab/masterpraktikum_ssl_segmentation,2,3,0,2,FALSE,https://github.com/theislab/masterpraktikum_ssl_segmentation,2,NA,NA,NA -theislab,moscot,theislab/moscot,119,3,36,9,FALSE,https://github.com/theislab/moscot,119,29764d40f7f0ce3d160ae901caf6bbaeada89043,"Merge pull request #748 from theislab/refactor/handle-solve-args +theislab,moscot,theislab/moscot,119,3,37,9,FALSE,https://github.com/theislab/moscot,119,29764d40f7f0ce3d160ae901caf6bbaeada89043,"Merge pull request #748 from theislab/refactor/handle-solve-args Refactor/handle solve args",[![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/12301003048) +theislab,moscot,theislab/moscot,119,3,37,9,FALSE,https://github.com/theislab/moscot,119,5e5bbb3f5edfe0443afeb0ee2d28d93d7aa4e949,"Merge pull request #774 from theislab/docs/more_info + +Make some improvements to documentation",[![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/12624247939) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/12624181421) theislab,moscot-framework_reproducibility,theislab/moscot-framework_reproducibility,3,2,2,0,FALSE,https://github.com/theislab/moscot-framework_reproducibility,3,NA,NA,NA theislab,moscot_benchmarks,theislab/moscot_benchmarks,2,2,1,0,FALSE,https://github.com/theislab/moscot_benchmarks,2,NA,NA,NA theislab,moscot_not,theislab/moscot_not,3,2,8,1,FALSE,https://github.com/theislab/moscot_not,3,NA,NA,NA theislab,moscot_notebooks,theislab/moscot_notebooks,8,1,7,4,FALSE,https://github.com/theislab/moscot_notebooks,8,320930274245a1b556e34778d0054ca6e2432b1e,"Merge pull request #84 from theislab/add/birth_death_desc -describe birth death parameters",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/12539952838) +describe birth death parameters",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/12624283480) theislab,moslin,theislab/moslin,11,1,0,1,FALSE,https://github.com/theislab/moslin,11,NA,NA,NA theislab,mouse_cross-condition_pancreatic_islet_atlas,theislab/mouse_cross-condition_pancreatic_islet_atlas,7,2,0,4,FALSE,https://github.com/theislab/mouse_cross-condition_pancreatic_islet_atlas,7,NA,NA,NA theislab,mubind,theislab/mubind,28,3,29,0,FALSE,https://github.com/theislab/mubind,28,3f62f838470ebc499540ff54fb8d074363abd7b6,Dropbox URL (typo),[![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10632591185) @@ -300,13 +293,13 @@ theislab,perturbation-metrics,theislab/perturbation-metrics,4,2,1,0,FALSE,https: theislab,prophet,theislab/prophet,27,6,2,2,FALSE,https://github.com/theislab/prophet,27,NA,NA,NA theislab,prophet-reproducibility,theislab/prophet-reproducibility,0,3,0,0,FALSE,https://github.com/theislab/prophet-reproducibility,0,NA,NA,NA theislab,pseudodynamics,theislab/pseudodynamics,39,7,0,6,FALSE,https://github.com/theislab/pseudodynamics,39,NA,NA,NA -theislab,regvelo,theislab/regvelo,18,2,0,1,FALSE,https://github.com/theislab/regvelo,18,619e025f7b811d77157dda144013ab1b86f8cb54,"Merge pull request #14 from theislab/WWXkenmo-patch-1 +theislab,regvelo,theislab/regvelo,19,2,0,1,FALSE,https://github.com/theislab/regvelo,19,619e025f7b811d77157dda144013ab1b86f8cb54,"Merge pull request #14 from theislab/WWXkenmo-patch-1 Update pyproject.toml",[![](https://github.com/theislab/regvelo/workflows/regvelo/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11323656087) -theislab,regvelo,theislab/regvelo,18,2,0,1,FALSE,https://github.com/theislab/regvelo,18,a9851861451a9af67ef40ded8f56f62957cf334e,"Merge pull request #7 from theislab/feat/update_package +theislab,regvelo,theislab/regvelo,19,2,0,1,FALSE,https://github.com/theislab/regvelo,19,a9851861451a9af67ef40ded8f56f62957cf334e,"Merge pull request #7 from theislab/feat/update_package update dependences",[![](https://github.com/theislab/regvelo/workflows/Release/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11307228307) -theislab,regvelo_reproducibility,theislab/regvelo_reproducibility,1,0,0,0,FALSE,https://github.com/theislab/regvelo_reproducibility,1,54988443d42d68d463e4b57b62a7c18073511419,Update Figshare project link,[![](https://github.com/theislab/regvelo_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/regvelo_reproducibility/actions/runs/12596891042) [![](https://github.com/theislab/regvelo_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/regvelo_reproducibility/actions/runs/12596891045) +theislab,regvelo_reproducibility,theislab/regvelo_reproducibility,2,0,0,0,FALSE,https://github.com/theislab/regvelo_reproducibility,2,54988443d42d68d463e4b57b62a7c18073511419,Update Figshare project link,[![](https://github.com/theislab/regvelo_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/regvelo_reproducibility/actions/runs/12596891042) [![](https://github.com/theislab/regvelo_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/regvelo_reproducibility/actions/runs/12596891045) theislab,reproducability_AutoGeneS,theislab/reproducability_AutoGeneS,0,3,0,0,FALSE,https://github.com/theislab/reproducability_AutoGeneS,0,NA,NA,NA theislab,reproducibility_AutoGeneS,theislab/reproducibility_AutoGeneS,0,3,0,0,FALSE,https://github.com/theislab/reproducibility_AutoGeneS,0,NA,NA,NA theislab,sc-best-practices-ce,theislab/sc-best-practices-ce,8,8,2,3,FALSE,https://github.com/theislab/sc-best-practices-ce,8,NA,NA,NA @@ -335,7 +328,7 @@ updates: - [github.com/pre-commit/mirrors-mypy: v1.13.0 → v1.14.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.13.0...v1.14.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/12508212521) -theislab,scarches,theislab/scarches,345,12,54,52,FALSE,https://github.com/theislab/scarches,345,NA,NA,NA +theislab,scarches,theislab/scarches,346,12,54,52,FALSE,https://github.com/theislab/scarches,346,NA,NA,NA theislab,scarches_notebooks,theislab/scarches_notebooks,0,3,0,0,FALSE,https://github.com/theislab/scarches_notebooks,0,NA,NA,NA theislab,scatac_poisson_reproducibility,theislab/scatac_poisson_reproducibility,9,3,0,0,FALSE,https://github.com/theislab/scatac_poisson_reproducibility,9,NA,NA,NA theislab,scgen,theislab/scgen,277,9,28,56,FALSE,https://github.com/theislab/scgen,277,NA,NA,NA @@ -452,11 +445,11 @@ theislab,single-cell-best-practices,theislab/single-cell-best-practices,811,19,7 * fix typo",[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292800) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292810) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292801) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292802) theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,287,15,39,36,FALSE,https://github.com/theislab/single-cell-transformer-papers,287,75797db884ef3cf60e82ed4454168a26e7284637,add manuscript information to index,[![](https://github.com/theislab/single-cell-transformer-papers/workflows/Document%20Generation/badge.svg)](https://github.com/theislab/single-cell-transformer-papers/actions/runs/12447562233) -theislab,single-cell-tutorial,theislab/single-cell-tutorial,1430,30,21,467,FALSE,https://github.com/theislab/single-cell-tutorial,1430,NA,NA,NA +theislab,single-cell-tutorial,theislab/single-cell-tutorial,1430,30,21,468,FALSE,https://github.com/theislab/single-cell-tutorial,1430,NA,NA,NA theislab,singlecell_proteomics,theislab/singlecell_proteomics,5,5,6,3,FALSE,https://github.com/theislab/singlecell_proteomics,5,NA,NA,NA theislab,spapros,theislab/spapros,33,3,12,7,FALSE,https://github.com/theislab/spapros,33,1ec08e6809978021e7ad0d7b7ce4f5412f391f79,"Merge pull request #357 from theislab/scrinshot_probe_designer -adapter tutorials to new framework",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12615405304) +adapter tutorials to new framework",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12624881816) theislab,spapros,theislab/spapros,33,3,12,7,FALSE,https://github.com/theislab/spapros,33,2f6c1ad9fdab44d29017e268ef215d18278f56b9,prints for identifying mem issues,[![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589767) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589776) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589778) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589764) theislab,spapros-pipeline,theislab/spapros-pipeline,7,2,0,0,FALSE,https://github.com/theislab/spapros-pipeline,7,fe84cf66cf6cf9b8fb441c74d4c004c20d1003cf,Update readme to refer to spapros smk repo,[![](https://github.com/theislab/spapros-pipeline/workflows/Run%20Example/badge.svg)](https://github.com/theislab/spapros-pipeline/actions/runs/11988359512) theislab,spapros-smk,theislab/spapros-smk,0,2,0,1,FALSE,https://github.com/theislab/spapros-smk,0,NA,NA,NA
8 18 47 - + bf27c9
theislab/ehrapy 249 54544 21228ac1 + + + +4903d6
theislab/ehrapy 249 54544 21 c4721f theislab/moscot 119 33637 9 29764d
theislab/moscot1193379 +5e5bbb
theislab/ncem 104 6 d03a07
theislab/DRVI 34 1 fdc2eb
theislab/graphcompass 34 2 7c4551
theislab/spapros 33 3 12 7 - 1ec08e
theislab/spapros 33 3 2f6c1a
theislab/mubind 28 3 3f62f8
theislab/hadge 24 3 1ed105
theislab/multimil 20 5 c721ba
theislab/regvelo1819 2 0 1 619e02
theislab/regvelo1819 2 0 1 a98518
theislab/geome 16 3 402a0a
theislab/multigrate 16 3 bd56d2
theislab/scanpydoc 12 6 6e07d8
theislab/cellrank2_reproducibility 9 1 8020e7
theislab/moscot_notebooks 8 1 7 4 320930
theislab/ehrapy-datasets 7 2 e441a5
theislab/spapros-pipeline 7 2 fe84cf
theislab/cellrank_notebooks 6 4 677784
theislab/ehrdata 5 2 80acdf
theislab/gh-dashboard 3 2 0 0d7dcf8185d28
theislab/regvelo_reproducibility12 0 0 0 549884
theislab/spatialdata-db 1 1 5fc4ad
theislab/idtrack 0 1 ec9e9f
theislab/troutpy 0 1 1430 30 21467468
theislab/scarches345346 12 54 52
theislab/chemCPA104105 5 12 24
theislab/cpa9091 5 21 17