diff --git a/README.md b/README.md index 1049088..0dfc586 100644 --- a/README.md +++ b/README.md @@ -2,7 +2,7 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2024-11-16 12:10:46 UTC +2024-11-17 12:10:55 UTC | Repo | Stars | Subscribers | Issues | Forks | Status | Commit | |:----------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| @@ -24,9 +24,9 @@ GitHub Dashboard | [theislab/graphcompass](https://github.com/theislab/graphcompass) | 33 | 2 | 1 | 0 | [![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) | 7c4551 | | [theislab/mubind](https://github.com/theislab/mubind) | 28 | 3 | 29 | 0 | [![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10632591185) | 3f62f8 | | [theislab/hadge](https://github.com/theislab/hadge) | 24 | 3 | 14 | 6 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/7569650236) | 1ed105 | -| [theislab/spapros](https://github.com/theislab/spapros) | 23 | 3 | 13 | 6 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/11866024113) | e8a37c | +| [theislab/spapros](https://github.com/theislab/spapros) | 23 | 3 | 13 | 6 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/11874852075) | e8a37c | | [theislab/spapros](https://github.com/theislab/spapros) | 23 | 3 | 13 | 6 | [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/11784217131) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/11784217134) | fc6cf6 | -| [theislab/multimil](https://github.com/theislab/multimil) | 18 | 5 | 5 | 3 | [![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/11370023712) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/11850583839) | 445402 | +| [theislab/multimil](https://github.com/theislab/multimil) | 18 | 5 | 5 | 3 | [![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/11870932723) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/11870932729) | c721ba | | [theislab/geome](https://github.com/theislab/geome) | 16 | 3 | 3 | 4 | [![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169) | 402a0a | | [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 12 | 6 | 3 | 6 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/11793773567) | 5e59a6 | | [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 8 | 1 | 0 | 1 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963288) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963242) | 8020e7 | @@ -34,7 +34,7 @@ GitHub Dashboard | [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 7 | 1 | 6 | 3 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/11769838887) | 210765 | | [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/6686677756) | 677784 | | [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 6 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/8356857136) | e441a5 | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 2 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/11869899563) | c98baa | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 2 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/11878648662) | 9236ed | | [theislab/spatialdata-db](https://github.com/theislab/spatialdata-db) | 1 | 1 | 25 | 0 | [![](https://github.com/theislab/spatialdata-db/workflows/Check%20Build/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11362121634) [![](https://github.com/theislab/spatialdata-db/workflows/Test/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11850585189) | 5fc4ad | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20idtrack%20Package/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702245) [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702249) [![](https://github.com/theislab/idtrack/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702241) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702236) [![](https://github.com/theislab/idtrack/workflows/Run%20idtrack%20Tests/badge.svg)](https://github.com/theislab/idtrack/actions/runs/8296702246) | ec9e9f | @@ -42,12 +42,12 @@ GitHub Dashboard | Repo | Stars | Subscribers | Issues | Forks | |:------------------------------------------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:| -| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1394 | 30 | 21 | 459 | -| [theislab/scarches](https://github.com/theislab/scarches) | 335 | 12 | 52 | 51 | +| [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1395 | 30 | 21 | 459 | +| [theislab/scarches](https://github.com/theislab/scarches) | 335 | 12 | 53 | 51 | | [theislab/scgen](https://github.com/theislab/scgen) | 266 | 9 | 28 | 56 | -| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 254 | 13 | 28 | 28 | +| [theislab/single-cell-transformer-papers](https://github.com/theislab/single-cell-transformer-papers) | 255 | 13 | 28 | 28 | | [theislab/dca](https://github.com/theislab/dca) | 246 | 11 | 32 | 72 | -| [theislab/paga](https://github.com/theislab/paga) | 207 | 10 | 24 | 33 | +| [theislab/paga](https://github.com/theislab/paga) | 208 | 10 | 24 | 33 | | [theislab/diffxpy](https://github.com/theislab/diffxpy) | 193 | 7 | 108 | 23 | | [theislab/kBET](https://github.com/theislab/kBET) | 154 | 8 | 9 | 23 | | [theislab/scCODA](https://github.com/theislab/scCODA) | 150 | 9 | 8 | 24 | diff --git a/index.html b/index.html index 969f8df..50fa8eb 100644 --- a/index.html +++ b/index.html @@ -49,7 +49,7 @@
-2024-11-16 12:12:10 UTC
13 | 6 | - | +e8a37c | ||||||||
5 | 5 | 3 | -- | -445402 | ++ | +c721ba | |||||
theislab/geome | @@ -345,8 +345,8 @@2 | 0 | 0 | -- | c98baa | ++ | 9236ed | ||||
theislab/spatialdata-db | @@ -394,7 +394,7 @@|||||||||||
theislab/single-cell-tutorial | -1394 | +1395 | 30 | 21 | 459 | @@ -403,7 +403,7 @@theislab/scarches | 335 | 12 | -52 | +53 | 51 |
theislab/single-cell-transformer-papers | -254 | +255 | 13 | 28 | 28 | @@ -429,7 +429,7 @@||||||
theislab/paga | -207 | +208 | 10 | 24 | 33 | diff --git a/repos.csv b/repos.csv index 8280377..033e07d 100644 --- a/repos.csv +++ b/repos.csv @@ -200,7 +200,7 @@ theislab,gastrulation_analysis,theislab/gastrulation_analysis,10,4,0,1,FALSE,htt theislab,geome,theislab/geome,16,3,3,4,FALSE,https://github.com/theislab/geome,16,402a0a8cdb442fee8666416e5f163c4098fa0c07,"Merge pull request #55 from theislab/fix/toarray Fix Sparse "".A"" Not Found",[![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169) -theislab,gh-dashboard,theislab/gh-dashboard,2,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,2,c98baa189305d7a0d97c4de4dabfd4a519e8c7cf,[status] 2024-11-15 12:12:32 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/11869899563) +theislab,gh-dashboard,theislab/gh-dashboard,2,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,2,9236eda46f903a7bcfce0324272d119f07173930,[status] 2024-11-16 12:12:24 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/11878648662) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,graphcompass,theislab/graphcompass,33,2,1,0,FALSE,https://github.com/theislab/graphcompass,33,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237) theislab,greatpy,theislab/greatpy,8,3,4,0,FALSE,https://github.com/theislab/greatpy,8,NA,NA,NA @@ -237,7 +237,9 @@ theislab,multicpa,theislab/multicpa,13,2,1,2,FALSE,https://github.com/theislab/m theislab,multicpa-reproducibility,theislab/multicpa-reproducibility,0,2,0,0,FALSE,https://github.com/theislab/multicpa-reproducibility,0,NA,NA,NA theislab,multigrate,theislab/multigrate,15,3,7,6,FALSE,https://github.com/theislab/multigrate,15,NA,NA,NA theislab,multigrate_reproducibility,theislab/multigrate_reproducibility,2,1,0,0,FALSE,https://github.com/theislab/multigrate_reproducibility,2,NA,NA,NA -theislab,multimil,theislab/multimil,18,5,5,3,FALSE,https://github.com/theislab/multimil,18,445402e3bed1cb1bfef16ca2cdaab20a13f4d0dc,added imputation functionality,[![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/11370023712) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/11850583839) +theislab,multimil,theislab/multimil,18,5,5,3,FALSE,https://github.com/theislab/multimil,18,c721babcaef2f9367cf0bea5e6ed07ef422afb6b,"Merge pull request #73 from theislab/mmq2r_benchmark + +Multimodal q2r",[![](https://github.com/theislab/multimil/workflows/Check%20Build/badge.svg)](https://github.com/theislab/multimil/actions/runs/11870932723) [![](https://github.com/theislab/multimil/workflows/Test/badge.svg)](https://github.com/theislab/multimil/actions/runs/11870932729) theislab,multimil_reproducibility,theislab/multimil_reproducibility,6,3,4,1,FALSE,https://github.com/theislab/multimil_reproducibility,6,NA,NA,NA theislab,multires-consensus-clustering,theislab/multires-consensus-clustering,3,4,9,0,FALSE,https://github.com/theislab/multires-consensus-clustering,3,NA,NA,NA theislab,nbconvertR,theislab/nbconvertR,3,3,1,2,FALSE,https://github.com/theislab/nbconvertR,3,NA,NA,NA @@ -247,7 +249,7 @@ theislab,ncem_tutorials,theislab/ncem_tutorials,12,4,6,0,FALSE,https://github.co theislab,neural_organoid_atlas,theislab/neural_organoid_atlas,15,5,2,1,FALSE,https://github.com/theislab/neural_organoid_atlas,15,NA,NA,NA theislab,nicheformer,theislab/nicheformer,63,4,14,2,FALSE,https://github.com/theislab/nicheformer,63,NA,NA,NA theislab,organoid_dexamethason_stimulation,theislab/organoid_dexamethason_stimulation,0,3,0,1,FALSE,https://github.com/theislab/organoid_dexamethason_stimulation,0,NA,NA,NA -theislab,paga,theislab/paga,207,10,24,33,FALSE,https://github.com/theislab/paga,207,NA,NA,NA +theislab,paga,theislab/paga,208,10,24,33,FALSE,https://github.com/theislab/paga,208,NA,NA,NA theislab,pancreas-targeted_pharmacology,theislab/pancreas-targeted_pharmacology,0,6,1,2,FALSE,https://github.com/theislab/pancreas-targeted_pharmacology,0,NA,NA,NA theislab,pancreatic-endocrinogenesis,theislab/pancreatic-endocrinogenesis,6,3,0,6,FALSE,https://github.com/theislab/pancreatic-endocrinogenesis,6,NA,NA,NA theislab,pdac_analysis,theislab/pdac_analysis,0,2,0,0,FALSE,https://github.com/theislab/pdac_analysis,0,NA,NA,NA @@ -283,7 +285,7 @@ updates: - [github.com/astral-sh/ruff-pre-commit: v0.7.2 → v0.7.3](https://github.com/astral-sh/ruff-pre-commit/compare/v0.7.2...v0.7.3) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/11793773567) -theislab,scarches,theislab/scarches,335,12,52,51,FALSE,https://github.com/theislab/scarches,335,NA,NA,NA +theislab,scarches,theislab/scarches,335,12,53,51,FALSE,https://github.com/theislab/scarches,335,NA,NA,NA theislab,scarches_notebooks,theislab/scarches_notebooks,0,3,0,0,FALSE,https://github.com/theislab/scarches_notebooks,0,NA,NA,NA theislab,scatac_poisson_reproducibility,theislab/scatac_poisson_reproducibility,9,3,0,0,FALSE,https://github.com/theislab/scatac_poisson_reproducibility,9,NA,NA,NA theislab,scgen,theislab/scgen,266,9,28,56,FALSE,https://github.com/theislab/scgen,266,NA,NA,NA @@ -362,12 +364,12 @@ theislab,single-cell-best-practices,theislab/single-cell-best-practices,777,19,7 * fix typo * fix typo",[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292800) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292810) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292801) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292802) -theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,254,13,28,28,FALSE,https://github.com/theislab/single-cell-transformer-papers,254,NA,NA,NA -theislab,single-cell-tutorial,theislab/single-cell-tutorial,1394,30,21,459,FALSE,https://github.com/theislab/single-cell-tutorial,1394,NA,NA,NA +theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,255,13,28,28,FALSE,https://github.com/theislab/single-cell-transformer-papers,255,NA,NA,NA +theislab,single-cell-tutorial,theislab/single-cell-tutorial,1395,30,21,459,FALSE,https://github.com/theislab/single-cell-tutorial,1395,NA,NA,NA theislab,singlecell_proteomics,theislab/singlecell_proteomics,5,5,6,3,FALSE,https://github.com/theislab/singlecell_proteomics,5,NA,NA,NA theislab,spapros,theislab/spapros,23,3,13,6,FALSE,https://github.com/theislab/spapros,23,e8a37c9e78039920a0792fc04f426ab062dbbf88,"Merge pull request #321 from theislab/patch_precommit -pre commit correction of readthedocs.yml",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/11866024113) +pre commit correction of readthedocs.yml",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/8661094687) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/11874852075) theislab,spapros,theislab/spapros,23,3,13,6,FALSE,https://github.com/theislab/spapros,23,fc6cf6606de13ae8ba7c1f7ae1e8d350c70e7f13,"[DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.12.2 Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.14 to 1.12.2.