Merge pull request #15 from effigies/dep/pybids_0.9

oesteban · web-flow · commit de975bc2b86a · 2019-07-09T09:11:54.000-07:00
MAINT: Use PyBIDS 0.9.x
diff --git a/requirements.txt b/requirements.txt
@@ -1,4 +1,4 @@
-pybids>=0.7.0,<0.8.0a0
+pybids>=0.9.0,<0.10.0a0
 pytest
 requests
-tqdm
+tqdm
diff --git a/templateflow/__about__.py b/templateflow/__about__.py
@@ -44,7 +44,7 @@
 ]
 
 REQUIRES = [
-    'pybids>=0.7.0,<0.8.0a0',
+    'pybids>=0.9.0,<0.10.0a0',
     'requests',
     'tqdm',
 ]
diff --git a/templateflow/conf/__init__.py b/templateflow/conf/__init__.py
@@ -39,5 +39,5 @@
             zipref.extractall(str(TF_HOME))
 
 TF_LAYOUT = Layout(
-    TF_HOME, validate=False, config='templateflow',
-    exclude=['.git', '.datalad', '.gitannex', '.gitattributes', 'scripts'])
+    str(TF_HOME), validate=False, config='templateflow',
+    ignore=['.git', '.datalad', '.gitannex', '.gitattributes', 'scripts'])
diff --git a/templateflow/conf/config.json b/templateflow/conf/config.json
@@ -11,7 +11,6 @@
             "pattern": "[_/\\\\]cohort-(\\d+)",
             "mandatory": false,
             "directory": "{{root}}{template}{cohort}",
-            "missing_value": "cohort-1",
             "dtype": "int"
         },
         {

Original file line number	Diff line number	Diff line change
`@@ -11,7 +11,6 @@`
`11`	`11`	`"pattern": "[_/\\\\]cohort-(\\d+)",`
`12`	`12`	`"mandatory": false,`
`13`	`13`	`"directory": "{{root}}{template}{cohort}",`
`14`		`- "missing_value": "cohort-1",`
`15`	`14`	`"dtype": "int"`
`16`	`15`	`},`
`17`	`16`	`{`