Basic infrastructure

Author: oesteban

.gitattributes

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+templateflow/_version.py export-subst

CHANGES.rst

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+Version 0.0.1
+=============
+
+* First functional release

MANIFEST.in

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+# data
+
+# misc
+include requirements.txt
+include CHANGES.rst
+include LICENSE
+include versioneer.py
+include templateflow/_version.py

get_version.py

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+#!/usr/bin/env python
+# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
+# vi: set ft=python sts=4 ts=4 sw=4 et:
+import sys
+import os.path as op
+
+
+def main():
+    sys.path.insert(0, op.abspath('.'))
+    from templateflow.__about__ import __version__
+    print(__version__)
+
+
+if __name__ == '__main__':
+    main()

setup.cfg

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+[versioneer]
+VCS = git
+style = pep440
+versionfile_source = templateflow/_version.py
+versionfile_build = templateflow/_version.py
+tag_prefix =
+parentdir_prefix = 

setup.py

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+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+""" templateflow setup script """
+
+
+def main():
+    """ Install entry-point """
+    from os import path as op
+    from inspect import getfile, currentframe
+    from setuptools import setup, find_packages
+    from templateflow.__about__ import (
+        __packagename__,
+        __author__,
+        __email__,
+        __maintainer__,
+        __license__,
+        __description__,
+        __longdesc__,
+        __url__,
+        DOWNLOAD_URL,
+        CLASSIFIERS,
+        REQUIRES,
+        SETUP_REQUIRES,
+        LINKS_REQUIRES,
+        TESTS_REQUIRES,
+        EXTRA_REQUIRES,
+    )
+
+    pkg_data = {'templateflow': []}
+
+    root_dir = op.dirname(op.abspath(getfile(currentframe())))
+    version = None
+    cmdclass = {}
+    if op.isfile(op.join(root_dir, __packagename__, 'VERSION')):
+        with open(op.join(root_dir, __packagename__, 'VERSION')) as vfile:
+            version = vfile.readline().strip()
+        pkg_data[__packagename__].insert(0, 'VERSION')
+
+    if version is None:
+        import versioneer
+        version = versioneer.get_version()
+        cmdclass = versioneer.get_cmdclass()
+
+    setup(
+        name=__packagename__,
+        version=version,
+        description=__description__,
+        long_description=__longdesc__,
+        author=__author__,
+        author_email=__email__,
+        maintainer=__maintainer__,
+        maintainer_email=__email__,
+        license=__license__,
+        url=__url__,
+        download_url=DOWNLOAD_URL,
+        classifiers=CLASSIFIERS,
+        packages=find_packages(exclude=['*.tests']),
+        zip_safe=False,
+        # Dependencies handling
+        setup_requires=SETUP_REQUIRES,
+        install_requires=list(set(REQUIRES)),
+        dependency_links=LINKS_REQUIRES,
+        tests_require=TESTS_REQUIRES,
+        extras_require=EXTRA_REQUIRES,
+        # Data
+        package_data=pkg_data,
+        include_package_data=True,
+        cmdclass=cmdclass,
+    )
+
+
+if __name__ == '__main__':
+    main()

templateflow/__about__.py

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+# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
+# vi: set ft=python sts=4 ts=4 sw=4 et:
+"""\
+Group inference and reporting of neuroimaging studies require that individual's \
+features are spatially aligned into a common frame where their location can be \
+called standard. \
+To that end, a multiplicity of brain templates with anatomical annotations \
+(i.e., atlases) have been published. \
+However, a centralized resource that allows programmatic access to templates is \
+lacking. \
+TemplateFlow is a modular, version-controlled resource that allows researchers \
+to use templates "off-the-shelf" and share new ones. \
+"""
+from ._version import get_versions
+__version__ = get_versions()['version']
+del get_versions
+
+__packagename__ = 'templateflow'
+__author__ = 'The CRN developers'
+__copyright__ = 'Copyright 2019, Center for Reproducible Neuroscience, Stanford University'
+__credits__ = ['Oscar Esteban']
+__license__ = '3-clause BSD'
+__maintainer__ = 'Oscar Esteban'
+__email__ = '[email protected]'
+__status__ = 'Prototype'
+
+__description__ = """\
+TemplateFlow's Python Client - TemplateFlow is the Zone of neuroimaging templates.
+"""
+__longdesc__ = __doc__
+__url__ = 'https://github.com/poldracklab/{}'.format(__packagename__)
+
+DOWNLOAD_URL = (
+    'https://pypi.python.org/packages/source/{name[0]}/{name}/{name}-{ver}.tar.gz'.format(
+        name=__packagename__, ver=__version__))
+CLASSIFIERS = [
+    'Development Status :: 3 - Alpha',
+    'Intended Audience :: Science/Research',
+    'Topic :: Scientific/Engineering :: Image Recognition',
+    'License :: OSI Approved :: Apache Software License',
+    'Programming Language :: Python :: 3.5',
+    'Programming Language :: Python :: 3.6',
+    'Programming Language :: Python :: 3.7',
+]
+
+REQUIRES = [
+    'datalad',
+]
+
+SETUP_REQUIRES = []
+REQUIRES += SETUP_REQUIRES
+
+LINKS_REQUIRES = []
+TESTS_REQUIRES = [
+    'pytest',
+    'pytest-xdist',
+]
+
+EXTRA_REQUIRES = {
+    'doc': [],
+    'tests': TESTS_REQUIRES,
+}
+
+# Enable a handle to install all extra dependencies at once
+EXTRA_REQUIRES['all'] = list(EXTRA_REQUIRES.values())

templateflow/__init__.py

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+# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
+# vi: set ft=python sts=4 ts=4 sw=4 et:
+"""
+The Zone of Templates
+=====================
+"""
+from .__about__ import (
+    __version__, __packagename__, __author__, __copyright__,
+    __credits__, __license__, __maintainer__, __email__, __status__,
+    __description__, __longdesc__)
+
+__all__ = [
+    '__version__',
+    '__packagename__',
+    '__author__',
+    '__copyright__',
+    '__credits__',
+    '__license__',
+    '__maintainer__',
+    '__email__',
+    '__status__',
+    '__description__',
+    '__longdesc__',
+]