testcs_updated1.jsonld

{
   "comments": {
      "description": "Auto generated by LinkML jsonld context generator",
      "source": "genome_annotation.yaml"
   },
   "@context": {
      "AGRKB": "https://www.alliancegenome.org/",
      "AspGD": {
         "@id": "http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid=",
         "@prefix": true
      },
      "BFO": {
         "@id": "http://purl.obolibrary.org/obo/BFO_",
         "@prefix": true
      },
      "BIOGRID": "http://identifiers.org/biogrid/",
      "BIOSAMPLE": "http://identifiers.org/biosample/",
      "BTO": {
         "@id": "http://purl.obolibrary.org/obo/BTO_",
         "@prefix": true
      },
      "CHEBI": {
         "@id": "http://purl.obolibrary.org/obo/CHEBI_",
         "@prefix": true
      },
      "CHEMBL.TARGET": "http://identifiers.org/chembl.target/",
      "CPT": "https://www.ama-assn.org/practice-management/cpt/",
      "DRUGBANK": "http://identifiers.org/drugbank/",
      "EDAM-DATA": {
         "@id": "http://edamontology.org/data_",
         "@prefix": true
      },
      "EDAM-FORMAT": {
         "@id": "http://edamontology.org/format_",
         "@prefix": true
      },
      "EDAM-OPERATION": {
         "@id": "http://edamontology.org/operation_",
         "@prefix": true
      },
      "EDAM-TOPIC": {
         "@id": "http://edamontology.org/topic_",
         "@prefix": true
      },
      "EFO": {
         "@id": "http://www.ebi.ac.uk/efo/EFO_",
         "@prefix": true
      },
      "ENSEMBL": "http://identifiers.org/ensembl/",
      "FB": "http://identifiers.org/fb/",
      "FMA": {
         "@id": "http://purl.obolibrary.org/obo/FMA_",
         "@prefix": true
      },
      "GENO": {
         "@id": "http://purl.obolibrary.org/obo/GENO_",
         "@prefix": true
      },
      "GOLD.META": "http://identifiers.org/gold.meta/",
      "GOREL": {
         "@id": "http://purl.obolibrary.org/obo/GOREL_",
         "@prefix": true
      },
      "HANCESTRO": {
         "@id": "http://www.ebi.ac.uk/ancestro/ancestro_",
         "@prefix": true
      },
      "HCPCS": "http://purl.bioontology.org/ontology/HCPCS/",
      "HGNC": "http://identifiers.org/hgnc/",
      "HMDB": "http://identifiers.org/hmdb/",
      "IAO": {
         "@id": "http://purl.obolibrary.org/obo/IAO_",
         "@prefix": true
      },
      "INO": {
         "@id": "http://purl.obolibrary.org/obo/INO_",
         "@prefix": true
      },
      "IUPHAR.FAMILY": "http://identifiers.org/iuphar.family/",
      "KEGG.BRITE": "https://bioregistry.io/kegg.brite:",
      "KEGG.GENES": "https://bioregistry.io/kegg.genes:bsu:",
      "LOINC": "http://loinc.org/rdf/",
      "MESH": "http://id.nlm.nih.gov/mesh/",
      "MGI": "http://identifiers.org/mgi/",
      "MONDO": {
         "@id": "http://purl.obolibrary.org/obo/MONDO_",
         "@prefix": true
      },
      "NBO-PROPERTY": "http://purl.obolibrary.org/obo/nbo#",
      "NCBIAssembly": "https://www.ncbi.nlm.nih.gov/assembly/",
      "NCBIGene": "http://identifiers.org/ncbigene/",
      "NCBITaxon": {
         "@id": "http://purl.obolibrary.org/obo/NCBITaxon_",
         "@prefix": true
      },
      "NCIT": {
         "@id": "http://purl.obolibrary.org/obo/NCIT_",
         "@prefix": true
      },
      "OBAN": "http://purl.org/oban/",
      "OBI": {
         "@id": "http://purl.obolibrary.org/obo/OBI_",
         "@prefix": true
      },
      "OMIM": {
         "@id": "http://purl.obolibrary.org/obo/OMIM_",
         "@prefix": true
      },
      "PATO": {
         "@id": "http://purl.obolibrary.org/obo/PATO_",
         "@prefix": true
      },
      "PHARMGKB.GENE": "https://www.pharmgkb.org/gene/",
      "PomBase": "https://www.pombase.org/gene/",
      "RGD": "http://identifiers.org/rgd/",
      "RO": {
         "@id": "http://purl.obolibrary.org/obo/RO_",
         "@prefix": true
      },
      "RXNORM": "http://purl.bioontology.org/ontology/RXNORM/",
      "SEMMEDDB": {
         "@id": "https://skr3.nlm.nih.gov/SemMedDB",
         "@prefix": true
      },
      "SGD": "http://identifiers.org/sgd/",
      "SIO": {
         "@id": "http://semanticscience.org/resource/SIO_",
         "@prefix": true
      },
      "SNOMED": {
         "@id": "http://purl.obolibrary.org/obo/SNOMED_",
         "@prefix": true
      },
      "SO": {
         "@id": "http://purl.obolibrary.org/obo/SO_",
         "@prefix": true
      },
      "STY": "http://purl.bioontology.org/ontology/STY/",
      "TAXRANK": {
         "@id": "http://purl.obolibrary.org/obo/TAXRANK_",
         "@prefix": true
      },
      "UBERON": {
         "@id": "http://purl.obolibrary.org/obo/UBERON_",
         "@prefix": true
      },
      "UBERON_CORE": "http://purl.obolibrary.org/obo/uberon/core#",
      "UBERON_NONAMESPACE": "http://purl.obolibrary.org/obo/core#",
      "UMLS": "http://identifiers.org/umls/",
      "UMLSSG": {
         "@id": "https://lhncbc.nlm.nih.gov/semanticnetwork/download/sg_archive/SemGroups-v04.txt",
         "@prefix": true
      },
      "UO-PROPERTY": "http://purl.obolibrary.org/obo/uo#",
      "WB": "http://identifiers.org/wb/",
      "WIKIDATA": "https://www.wikidata.org/entity/",
      "WIKIDATA_PROPERTY": "https://www.wikidata.org/prop/",
      "WormBase": {
         "@id": "https://www.wormbase.org/get?name=",
         "@prefix": true
      },
      "Xenbase": {
         "@id": "http://www.xenbase.org/gene/showgene.do?method=display&geneId=",
         "@prefix": true
      },
      "ZFIN": "http://identifiers.org/zfin/",
      "bican": "https://identifiers.org/brain-bican/vocab/",
      "biolink": "https://w3id.org/biolink/vocab/",
      "bioschemas": "https://bioschemas.org/",
      "dcid": "https://datacommons.org/browser/",
      "dct": "http://purl.org/dc/terms/",
      "dctypes": "http://purl.org/dc/dcmitype/",
      "dictyBase": "http://dictybase.org/gene/",
      "doi": "https://doi.org/",
      "gff3": "https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md#",
      "gpi": "https://github.com/geneontology/go-annotation/blob/master/specs/gpad-gpi-2-0.md#",
      "linkml": "https://w3id.org/linkml/",
      "ncbi": {
         "@id": "https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=",
         "@prefix": true
      },
      "oboInOwl": "http://www.geneontology.org/formats/oboInOwl#",
      "orphanet": {
         "@id": "http://www.orpha.net/ORDO/Orphanet_",
         "@prefix": true
      },
      "owl": "http://www.w3.org/2002/07/owl#",
      "pav": "http://purl.org/pav/",
      "prov": "http://www.w3.org/ns/prov#",
      "qud": "http://qudt.org/1.1/schema/qudt#",
      "rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
      "rdfs": "http://www.w3.org/2000/01/rdf-schema#",
      "schema": "http://schema.org/",
      "skos": "http://www.w3.org/2004/02/skos/core#",
      "xsd": "http://www.w3.org/2001/XMLSchema#",
      "@base": "https://identifiers.org/brain-bican/vocab/",
      "@vocab": "https://identifiers.org/brain-bican/vocab/",
      "annotations": {
         "@type": "@id",
         "@id": "annotations"
      },
      "genome_annotations": {
         "@type": "@id",
         "@id": "genome_annotations"
      },
      "genome_assemblies": {
         "@type": "@id",
         "@id": "genome_assemblies"
      },
      "authority": {
         "@context": {
            "@vocab": "@null",
            "text": "skos:notation",
            "description": "skos:prefLabel",
            "meaning": "@id"
         },
         "@id": "authority"
      },
      "category": {
         "@type": "@id",
      "@id": "biolink:category"
      },
      "checksum_algorithm": {
         "@context": {
            "@vocab": "@null",
            "text": "skos:notation",
            "description": "skos:prefLabel",
            "meaning": "@id"
         },
         "@id": "checksum_algorithm"
      },
      "value": {
         "@id": "value"
      },
      "content_url": {
         "@id": "schema:url"
      },
      "creation_date": {
         "@type": "xsd:date",
         "@id": "biolink:creation_date"
      },
      "deprecated": {
         "@type": "xsd:boolean",
         "@id": "biolink:deprecated"
      },
      "description": {
         "@id": "dct:description"
      },
      "digest": {
         "@type": "@id",
         "@id": "digest"
      },
      "format": {
         "@id": "biolink:format"
      },
      "full_name": {
         "@id": "biolink:full_name"
      },
      "referenced_in": {
         "@type": "@id",
         "@id": "referenced_in"
      },
      "reference_assembly": {
         "@type": "@id",
         "@id": "reference_assembly"
      },
      "has_attribute": {
         "@type": "@id",
         "@id": "biolink:has_attribute"
      },
      "has_attribute_type": {
         "@type": "@id",
         "@id": "biolink:has_attribute_type"
      },
      "has_biological_sequence": {
         "@id": "biolink:has_biological_sequence"
      },
      "has_numeric_value": {
         "@type": "xsd:double",
         "@id": "biolink:has_numeric_value"
      },
      "has_qualitative_value": {
         "@type": "@id",
         "@id": "biolink:has_qualitative_value"
      },
      "has_quantitative_value": {
         "@type": "@id",
         "@id": "biolink:has_quantitative_value"
      },
      "has_taxonomic_rank": {
         "@type": "@id",
         "@id": "biolink:has_taxonomic_rank"
      },
      "has_unit": {
         "@type": "UO:0000000",
         "@id": "biolink:has_unit"
      },
      "id": "@id",
      "in_taxon": {
         "@type": "@id",
         "@id": "biolink:in_taxon"
      },
      "in_taxon_label": {
         "@id": "biolink:in_taxon_label"
      },
      "iri": {
         "@type": "@id",
         "@id": "biolink:iri"
      },
      "license": {
         "@id": "biolink:license"
      },
      "molecular_type": {
         "@id": "molecular_type"
      },
      "name": {
         "@id": "rdfs:label"
      },
      "node_property": {
         "@id": "biolink:node_property"
      },
      "provided_by": {
         "@id": "biolink:provided_by"
      },
      "related_to": {
         "@type": "@id",
         "@id": "biolink:related_to"
      },
      "related_to_at_instance_level": {
         "@type": "@id",
         "@id": "biolink:related_to_at_instance_level"
      },
      "rights": {
         "@id": "biolink:rights"
      },
      "source_id": {
         "@id": "schema:identifier"
      },
      "strain": {
         "@id": "strain"
      },
      "symbol": {
         "@id": "biolink:symbol"
      },
      "synonym": {
         "@id": "biolink:synonym"
      },
      "type": {
         "@type": "@id",
         "@id": "rdf:type"
      },
      "version": {
         "@id": "biolink:version"
      },
      "xref": {
         "@type": "@id",
         "@id": "biolink:xref"
      },
      "Activity": {
         "@id": "biolink:Activity"
      },
      "ActivityAndBehavior": {
         "@id": "biolink:ActivityAndBehavior"
      },
      "Annotation": {
         "@id": "biolink:Annotation"
      },
      "AnnotationCollection": {
         "@id": "AnnotationCollection"
      },
      "Attribute": {
         "@id": "biolink:Attribute"
      },
      "BiologicalEntity": {
         "@id": "biolink:BiologicalEntity"
      },
      "Checksum": {
         "@id": "Checksum"
      },
      "ChemicalEntityOrGeneOrGeneProduct": {
         "@id": "biolink:ChemicalEntityOrGeneOrGeneProduct"
      },
      "Dataset": {
         "@id": "biolink:Dataset"
      },
      "Entity": {
         "@id": "biolink:Entity"
      },
      "Gene": {
         "@id": "biolink:Gene"
      },
      "GeneAnnotation": {
         "@id": "GeneAnnotation"
      },
      "GeneOrGeneProduct": {
         "@id": "biolink:GeneOrGeneProduct"
      },
      "Genome": {
         "@id": "biolink:Genome"
      },
      "GenomeAnnotation": {
         "@id": "GenomeAnnotation"
      },
      "GenomeAssembly": {
         "@id": "GenomeAssembly"
      },
      "GenomicEntity": {
         "@id": "biolink:GenomicEntity"
      },
      "InformationContentEntity": {
         "@id": "biolink:InformationContentEntity"
      },
      "MacromolecularMachineMixin": {
         "@id": "biolink:MacromolecularMachineMixin"
      },
      "MaterialSample": {
         "@id": "biolink:MaterialSample"
      },
      "NamedThing": {
         "@id": "biolink:NamedThing"
      },
      "Occurrent": {
         "@id": "biolink:Occurrent"
      },
      "OntologyClass": {
         "@id": "biolink:OntologyClass"
      },
      "OrganismTaxon": {
         "@id": "biolink:OrganismTaxon"
      },
      "PhysicalEntity": {
         "@id": "biolink:PhysicalEntity"
      },
      "PhysicalEssence": {
         "@id": "biolink:PhysicalEssence"
      },
      "PhysicalEssenceOrOccurrent": {
         "@id": "biolink:PhysicalEssenceOrOccurrent"
      },
      "Procedure": {
         "@id": "biolink:Procedure"
      },
      "QuantityValue": {
         "@id": "biolink:QuantityValue"
      },
      "SubjectOfInvestigation": {
         "@id": "biolink:SubjectOfInvestigation"
      },
      "TaxonomicRank": {
         "@id": "biolink:TaxonomicRank"
      },
      "ThingWithTaxon": {
         "@id": "biolink:ThingWithTaxon"
      }
   }
}