video_transcription.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 13,
   "id": "dd6c9525-c884-4cff-9517-27fc63641a03",
   "metadata": {},
   "outputs": [],
   "source": [
    "!pip install -q openai youtube-transcript-api retry"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "b2080c74-12ad-4b35-961c-574503dc08f7",
   "metadata": {},
   "source": [
    "## Extract Video Transcription from YouTube"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "id": "3f4cabfc-9161-4704-8d36-848627c429e8",
   "metadata": {},
   "outputs": [],
   "source": [
    "from youtube_transcript_api import YouTubeTranscriptApi\n",
    "def get_transcript(youtube_video_id):\n",
    "    transcript = YouTubeTranscriptApi.get_transcript(youtube_video_id)\n",
    "    print(transcript)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "id": "bb09d352-93a9-4782-9c02-b11a14cf3e31",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
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5.321}, {'text': 'coffee U as show have introduced kind of', 'start': 7087.04, 'duration': 5.96}, {'text': 'the knowledge based project uh our role', 'start': 7089.92, 'duration': 4.92}, {'text': 'this afternoon is to kind of dig a', 'start': 7093.0, 'duration': 4.56}, {'text': 'little bit into uh what we might', 'start': 7094.84, 'duration': 5.92}, {'text': 'consider a prototype of understanding', 'start': 7097.56, 'duration': 5.88}, {'text': 'how information is connected in graphs', 'start': 7100.76, 'duration': 5.439}, {'text': \"in ban and how we're thinking about this\", 'start': 7103.44, 'duration': 4.56}, {'text': \"so I'll tell you a little bit about the\", 'start': 7106.199, 'duration': 3.681}, {'text': 'knowledge graph and this is about', 'start': 7108.0, 'duration': 4.88}, {'text': 'connecting the dots of information U and', 'start': 7109.88, 'duration': 4.48}, {'text': 'how we think about it', 'start': 7112.88, 'duration': 4.0}, {'text': 'scientifically even philosophically at', 'start': 7114.36, 'duration': 5.6}, {'text': 'times so what is a knowledge graphing uh', 'start': 7116.88, 'duration': 4.96}, {'text': 'uses a graph data model to accumulate', 'start': 7119.96, 'duration': 4.199}, {'text': 'and convey Real World Knowledge nodes', 'start': 7121.84, 'duration': 5.08}, {'text': 'represent real world entities person', 'start': 7124.159, 'duration': 4.56}, {'text': 'location edges represent the', 'start': 7126.92, 'duration': 4.12}, {'text': 'relationship lives in between these', 'start': 7128.719, 'duration': 4.201}, {'text': \"entities and there's this kind of\", 'start': 7131.04, 'duration': 5.199}, {'text': 'pyramid of data information knowledge', 'start': 7132.92, 'duration': 5.159}, {'text': \"and wisdom and I don't like that last\", 'start': 7136.239, 'duration': 4.88}, {'text': \"one so I'm just going to cover it\", 'start': 7138.079, 'duration': 6.401}, {'text': \"up if somebody knows what that is I'll\", 'start': 7141.119, 'duration': 5.12}, {'text': \"have a beer with you and we'll talk more\", 'start': 7144.48, 'duration': 4.8}, {'text': 'about it', 'start': 7146.239, 'duration': 4.561}, {'text': 'uh', 'start': 7149.28, 'duration': 3.839}, {'text': \"so it's something important to\", 'start': 7150.8, 'duration': 3.52}, {'text': 'understand these three different lays', 'start': 7153.119, 'duration': 3.441}, {'text': 'because we talk about it all sometimes', 'start': 7154.32, 'duration': 5.279}, {'text': 'as the same thing and I want to break', 'start': 7156.56, 'duration': 5.159}, {'text': \"this up a little bit so let's go into\", 'start': 7159.599, 'duration': 4.241}, {'text': 'this', 'start': 7161.719, 'duration': 4.681}, {'text': 'data to to me and again this is my way', 'start': 7163.84, 'duration': 5.04}, {'text': 'of aligning all of our Notions of these', 'start': 7166.4, 'duration': 4.679}, {'text': \"three terms at least for today's session\", 'start': 7168.88, 'duration': 5.12}, {'text': 'at least for now is raw unprocessed', 'start': 7171.079, 'duration': 5.241}, {'text': 'facts and figures without any context', 'start': 7174.0, 'duration': 4.239}, {'text': 'they can be quantitative or', 'start': 7176.32, 'duration': 4.12}, {'text': 'qualitative information is data with', 'start': 7178.239, 'duration': 4.121}, {'text': 'context and meaning it is often', 'start': 7180.44, 'duration': 3.639}, {'text': 'processed organized and structured in a', 'start': 7182.36, 'duration': 3.92}, {'text': 'way that is Meaningful to the user', 'start': 7184.079, 'duration': 4.361}, {'text': 'knowledge is derived from information by', 'start': 7186.28, 'duration': 4.16}, {'text': 'insights understanding patterns and', 'start': 7188.44, 'duration': 4.279}, {'text': 'contextualizing information', 'start': 7190.44, 'duration': 4.679}, {'text': 'so as an example you know an array of', 'start': 7192.719, 'duration': 6.801}, {'text': 'numbers is data uh that same array when', 'start': 7195.119, 'duration': 6.361}, {'text': 'displayed as an image has more context', 'start': 7199.52, 'duration': 4.0}, {'text': 'around it that tells you that is a', 'start': 7201.48, 'duration': 4.239}, {'text': 'certain type of data that this has been', 'start': 7203.52, 'duration': 4.04}, {'text': 'acquired some instrument that has', 'start': 7205.719, 'duration': 5.281}, {'text': 'acquired this u a Cell by gen Matrix is', 'start': 7207.56, 'duration': 5.32}, {'text': \"an array again if it's just the\", 'start': 7211.0, 'duration': 3.96}, {'text': 'expression level data but if I tell you', 'start': 7212.88, 'duration': 3.52}, {'text': 'what the cells are I tell you what the', 'start': 7214.96, 'duration': 3.679}, {'text': \"genes are now I've contextualized that\", 'start': 7216.4, 'duration': 4.36}, {'text': 'array a little bit more and I call that', 'start': 7218.639, 'duration': 4.56}, {'text': 'information and could be at least in the', 'start': 7220.76, 'duration': 4.64}, {'text': 'B hand context turned into something', 'start': 7223.199, 'duration': 6.561}, {'text': 'like a umat uh display which shows cell', 'start': 7225.4, 'duration': 6.56}, {'text': 'types and clusters in different ways', 'start': 7229.76, 'duration': 4.359}, {'text': 'colored perhaps by brain anatomy or', 'start': 7231.96, 'duration': 5.08}, {'text': 'parcellations or regions of that nature', 'start': 7234.119, 'duration': 4.96}, {'text': 'and that is connecting information in a', 'start': 7237.04, 'duration': 4.079}, {'text': 'way to say certain cell types have', 'start': 7239.079, 'duration': 3.961}, {'text': 'certain types of Expressions certain', 'start': 7241.119, 'duration': 3.761}, {'text': 'ways they cluster certain parts of the', 'start': 7243.04, 'duration': 4.92}, {'text': 'brain they come from U and maybe and', 'start': 7244.88, 'duration': 6.6}, {'text': 'this is the maybe involved in some', 'start': 7247.96, 'duration': 4.639}, {'text': 'disease', 'start': 7251.48, 'duration': 3.56}, {'text': 'formation Etc so this is where we start', 'start': 7252.599, 'duration': 5.161}, {'text': \"getting to and may could be I'll keep\", 'start': 7255.04, 'duration': 5.92}, {'text': 'adding treated by this protocal therapy', 'start': 7257.76, 'duration': 5.959}, {'text': \"or pharmacogenetic substance so that's\", 'start': 7260.96, 'duration': 4.719}, {'text': 'where we start getting into what we can', 'start': 7263.719, 'duration': 5.52}, {'text': 'go from raw data to insights that we', 'start': 7265.679, 'duration': 6.721}, {'text': 'can in this space we kind of take data', 'start': 7269.239, 'duration': 4.641}, {'text': \"and I'm calling features and of\", 'start': 7272.4, 'duration': 3.44}, {'text': 'information over here to knowledge to', 'start': 7273.88, 'duration': 4.359}, {'text': \"hopefully use uh there's lots of\", 'start': 7275.84, 'duration': 3.799}, {'text': 'different kinds of data and I put a', 'start': 7278.239, 'duration': 3.96}, {'text': 'question mark in the center heartly', 'start': 7279.639, 'duration': 5.121}, {'text': 'because there are many ways of going', 'start': 7282.199, 'duration': 5.04}, {'text': 'from A to B and this is important for us', 'start': 7284.76, 'duration': 4.08}, {'text': 'to keep in mind as we think about', 'start': 7287.239, 'duration': 4.041}, {'text': 'knowledge knowledge is dependent not', 'start': 7288.84, 'duration': 5.759}, {'text': 'just on the sources and', 'start': 7291.28, 'duration': 3.319}, {'text': \"instrumentation and D speaker but it's\", 'start': 7295.48, 'duration': 6.599}, {'text': 'also dependent on uh the Transformations', 'start': 7299.0, 'duration': 4.8}, {'text': 'we apply to these things and since we', 'start': 7302.079, 'duration': 4.16}, {'text': 'living in the digital world each', 'start': 7303.8, 'duration': 5.52}, {'text': 'pipline is part of that knowledge stream', 'start': 7306.239, 'duration': 4.92}, {'text': 'the algorithm you use the methods you', 'start': 7309.32, 'duration': 4.6}, {'text': 'use they might change how we meet now we', 'start': 7311.159, 'duration': 5.601}, {'text': 'might say if different pipelines behave', 'start': 7313.92, 'duration': 5.679}, {'text': 'the same way and give us this consistent', 'start': 7316.76, 'duration': 4.839}, {'text': \"output that's knowledge itself that\", 'start': 7319.599, 'duration': 5.681}, {'text': \"there's consistency across these\", 'start': 7321.599, 'duration': 3.681}, {'text': 'pipelines so what is a knowledge graph a', 'start': 7325.52, 'duration': 5.28}, {'text': 'knowledge graph is again this connection', 'start': 7328.119, 'duration': 5.361}, {'text': \"of entities and their relations that's\", 'start': 7330.8, 'duration': 6.0}, {'text': 'how we see a Knowledge Graph uh here is', 'start': 7333.48, 'duration': 6.199}, {'text': 'an example of also saying that these', 'start': 7336.8, 'duration': 6.12}, {'text': 'elements may come from different sources', 'start': 7339.679, 'duration': 5.161}, {'text': 'we have a book a scientific publication', 'start': 7342.92, 'duration': 3.48}, {'text': 'and a website from which certain', 'start': 7344.84, 'duration': 4.52}, {'text': 'elements of this graph are generated', 'start': 7346.4, 'duration': 4.759}, {'text': 'with the idea that if each of us', 'start': 7349.36, 'duration': 4.4}, {'text': 'describe components of this in the same', 'start': 7351.159, 'duration': 5.201}, {'text': 'way if you build a graph it', 'start': 7353.76, 'duration': 4.52}, {'text': 'automatically connects to the graph I', 'start': 7356.36, 'duration': 3.92}, {'text': 'build so earlier there was a question in', 'start': 7358.28, 'duration': 5.359}, {'text': 'sh talked about Federated queries the', 'start': 7360.28, 'duration': 5.879}, {'text': 'advantage of a graph with consistency in', 'start': 7363.639, 'duration': 5.801}, {'text': 'terminology is that is you might be', 'start': 7366.159, 'duration': 5.241}, {'text': 'building something and we should be able', 'start': 7369.44, 'duration': 4.799}, {'text': 'to connect together now this requires', 'start': 7371.4, 'duration': 4.799}, {'text': 'something us to agree on those entities', 'start': 7374.239, 'duration': 5.201}, {'text': 'and those relations maybe the entities', 'start': 7376.199, 'duration': 5.281}, {'text': 'much more so than the relations in some', 'start': 7379.44, 'duration': 5.639}, {'text': 'ways um but if we can get that', 'start': 7381.48, 'duration': 5.639}, {'text': 'alignment if we understand what the', 'start': 7385.079, 'duration': 4.04}, {'text': 'metadata and properties are around each', 'start': 7387.119, 'duration': 4.321}, {'text': 'entity that is Meaningful to us as', 'start': 7389.119, 'duration': 4.52}, {'text': 'scientists now we can start putting', 'start': 7391.44, 'duration': 4.52}, {'text': 'these graph togethers whether we build', 'start': 7393.639, 'duration': 5.201}, {'text': 'it individually or we build it together', 'start': 7395.96, 'duration': 4.8}, {'text': 'in a', 'start': 7398.84, 'duration': 3.96}, {'text': 'consortion so I wanted to go through a', 'start': 7400.76, 'duration': 4.08}, {'text': 'little bit about these some principles', 'start': 7402.8, 'duration': 4.919}, {'text': 'of constructing knowledge graphs we want', 'start': 7404.84, 'duration': 6.08}, {'text': \"it to be structured or modeled so I'm\", 'start': 7407.719, 'duration': 5.88}, {'text': 'using single words over here so that we', 'start': 7410.92, 'duration': 5.44}, {'text': 'can talk about it in a simplistic way', 'start': 7413.599, 'duration': 5.201}, {'text': \"but it's really about the fact that we\", 'start': 7416.36, 'duration': 5.0}, {'text': 'want information not to', 'start': 7418.8, 'duration': 6.279}, {'text': 'exist on its own but in some structure', 'start': 7421.36, 'duration': 6.239}, {'text': 'in some notion of connections and we', 'start': 7425.079, 'duration': 4.241}, {'text': 'will build models in fact we are not the', 'start': 7427.599, 'duration': 3.6}, {'text': 'first person to build models models that', 'start': 7429.32, 'duration': 4.0}, {'text': 'we built for ever database engineers', 'start': 7431.199, 'duration': 3.96}, {'text': 'build models scientists build models', 'start': 7433.32, 'duration': 4.48}, {'text': 'ontologists build models this is about', 'start': 7435.159, 'duration': 4.241}, {'text': 'aligning that saying structured', 'start': 7437.8, 'duration': 3.319}, {'text': 'information actually represents our', 'start': 7439.4, 'duration': 3.92}, {'text': 'priors in some sense our knowledge of', 'start': 7441.119, 'duration': 4.881}, {'text': 'the system and state that we can now', 'start': 7443.32, 'duration': 4.96}, {'text': 'structure around the', 'start': 7446.0, 'duration': 5.599}, {'text': 'information extensible sh mentioned read', 'start': 7448.28, 'duration': 6.0}, {'text': 'right uh we want information to be able', 'start': 7451.599, 'duration': 5.52}, {'text': 'to come into this this could mean that', 'start': 7454.28, 'duration': 4.68}, {'text': 'information that comes in conflict with', 'start': 7457.119, 'duration': 3.881}, {'text': \"other information that exists that's\", 'start': 7458.96, 'duration': 4.159}, {'text': 'okay it could mean that information', 'start': 7461.0, 'duration': 5.32}, {'text': \"changes over time that's okay too but we\", 'start': 7463.119, 'duration': 6.0}, {'text': 'want to see that as an evolution of our', 'start': 7466.32, 'duration': 5.2}, {'text': 'understanding of scies around us and', 'start': 7469.119, 'duration': 4.56}, {'text': 'hence we need it to be read right it', 'start': 7471.52, 'duration': 5.8}, {'text': 'cannot just be a readon system curated', 'start': 7473.679, 'duration': 5.56}, {'text': \"there's a lot of expertise people have\", 'start': 7477.32, 'duration': 3.759}, {'text': 'knowledge I mean today we talk about', 'start': 7479.239, 'duration': 4.88}, {'text': 'llms and other things producing elements', 'start': 7481.079, 'duration': 6.16}, {'text': 'of this or even writing graphs right uh', 'start': 7484.119, 'duration': 5.04}, {'text': \"but there's a lot of existing knowledge\", 'start': 7487.239, 'duration': 5.041}, {'text': \"that exists that exists in people's head\", 'start': 7489.159, 'duration': 5.241}, {'text': \"how do we take it out of people's heads\", 'start': 7492.28, 'duration': 5.04}, {'text': 'and put it in this structured form can', 'start': 7494.4, 'duration': 5.319}, {'text': \"we make a resource that's useful to\", 'start': 7497.32, 'duration': 5.52}, {'text': 'people so where their expertise counts', 'start': 7499.719, 'duration': 5.88}, {'text': 'over time now we might find some', 'start': 7502.84, 'duration': 6.12}, {'text': 'foundational model in the next two', 'start': 7505.599, 'duration': 6.241}, {'text': 'years abstracts extracts all of this', 'start': 7508.96, 'duration': 5.8}, {'text': 'information but right now at this stage', 'start': 7511.84, 'duration': 4.799}, {'text': 'I would call foundational models are the', 'start': 7514.76, 'duration': 4.64}, {'text': 'current llms at a shallow level of', 'start': 7516.639, 'duration': 4.761}, {'text': 'knowledge the moment you start digging', 'start': 7519.4, 'duration': 3.4}, {'text': 'in', 'start': 7521.4, 'duration': 3.64}, {'text': 'at least the general purpose ones start', 'start': 7522.8, 'duration': 3.96}, {'text': \"breaking down and there's several papers\", 'start': 7525.04, 'duration': 3.72}, {'text': 'out there that have been evaluating', 'start': 7526.76, 'duration': 4.6}, {'text': 'human curation versus llms and various', 'start': 7528.76, 'duration': 5.0}, {'text': 'types of domains and the current thing', 'start': 7531.36, 'duration': 4.08}, {'text': 'is and this is where people are fine', 'start': 7533.76, 'duration': 3.919}, {'text': 'tunic people are doing additional work', 'start': 7535.44, 'duration': 4.48}, {'text': 'to enhance information but there is a', 'start': 7537.679, 'duration': 4.48}, {'text': 'level of curation that comes in from', 'start': 7539.92, 'duration': 4.08}, {'text': 'just experience and expertise that', 'start': 7542.159, 'duration': 4.48}, {'text': \"people have and that's not always\", 'start': 7544.0, 'duration': 4.639}, {'text': 'represented in papers which is where', 'start': 7546.639, 'duration': 4.48}, {'text': 'these models are largely digging in', 'start': 7548.639, 'duration': 4.161}, {'text': 'right now for for', 'start': 7551.119, 'duration': 5.921}, {'text': \"information usable uh can't just build a\", 'start': 7552.8, 'duration': 6.439}, {'text': 'graph and leave it out there yes we will', 'start': 7557.04, 'duration': 5.36}, {'text': 'dump it as we discussed earlier in a', 'start': 7559.239, 'duration': 4.761}, {'text': 'place where people can leverage it for', 'start': 7562.4, 'duration': 4.12}, {'text': 'other purposes but we want it more than', 'start': 7564.0, 'duration': 4.84}, {'text': 'just exposing it to the world we want it', 'start': 7566.52, 'duration': 4.88}, {'text': 'to be traversible we want it to connect', 'start': 7568.84, 'duration': 5.52}, {'text': 'up different elements um and we want', 'start': 7571.4, 'duration': 6.279}, {'text': 'people to be able to tell us based on', 'start': 7574.36, 'duration': 5.16}, {'text': 'this graph what assertions they are', 'start': 7577.679, 'duration': 4.121}, {'text': 'making what evidence exists behind those', 'start': 7579.52, 'duration': 4.84}, {'text': 'assertions what data exists behind those', 'start': 7581.8, 'duration': 4.72}, {'text': 'evidence what process was used to', 'start': 7584.36, 'duration': 5.279}, {'text': 'connect the data to an Evidence', 'start': 7586.52, 'duration': 5.48}, {'text': 'statement uh and these are opportunities', 'start': 7589.639, 'duration': 4.401}, {'text': 'still right now because the world of', 'start': 7592.0, 'duration': 5.0}, {'text': 'AIML Technologies can help us curate', 'start': 7594.04, 'duration': 6.28}, {'text': 'some of these knowledge pieces uh we can', 'start': 7597.0, 'duration': 5.52}, {'text': \"we'll talk more I think u in the\", 'start': 7600.32, 'duration': 5.879}, {'text': 'discussion part of this transparent uh', 'start': 7602.52, 'duration': 5.719}, {'text': 'our Providence we need to know where the', 'start': 7606.199, 'duration': 4.321}, {'text': 'sources of information are in this graph', 'start': 7608.239, 'duration': 3.88}, {'text': 'where did it come from', 'start': 7610.52, 'duration': 4.76}, {'text': 'in an ideal place this is why much of', 'start': 7612.119, 'duration': 5.401}, {'text': 'current knowledge or knowledge bases', 'start': 7615.28, 'duration': 5.56}, {'text': 'kind of link from evidence or assertions', 'start': 7617.52, 'duration': 5.92}, {'text': \"to a paper that's their source of\", 'start': 7620.84, 'duration': 4.96}, {'text': 'information we wanted to go beyond that', 'start': 7623.44, 'duration': 4.279}, {'text': 'paper all the way down to data because', 'start': 7625.8, 'duration': 4.359}, {'text': 'we know that the processing chain likely', 'start': 7627.719, 'duration': 4.161}, {'text': 'impacts some of those statements that we', 'start': 7630.159, 'duration': 2.4}, {'text': 'are', 'start': 7631.88, 'duration': 4.56}, {'text': 'making um and programmable at least I', 'start': 7632.559, 'duration': 8.241}, {'text': 'like to compute on things uh I want a', 'start': 7636.44, 'duration': 6.96}, {'text': 'graph to be computable accessible in', 'start': 7640.8, 'duration': 4.64}, {'text': 'programmatic needs so we think of this', 'start': 7643.4, 'duration': 3.799}, {'text': 'as principles of constructing knowledge', 'start': 7645.44, 'duration': 3.96}, {'text': \"graphs that's how we hope we are\", 'start': 7647.199, 'duration': 4.601}, {'text': 'constructing our graphs right now so let', 'start': 7649.4, 'duration': 4.56}, {'text': 'me get into how do we build the byan', 'start': 7651.8, 'duration': 4.48}, {'text': 'knowledge graph uh this will cover', 'start': 7653.96, 'duration': 4.32}, {'text': 'creating models mapping and ingesting', 'start': 7656.28, 'duration': 6.919}, {'text': 'data and building infrastructure around', 'start': 7658.28, 'duration': 4.919}, {'text': 'it the reason we show you this picture', 'start': 7663.719, 'duration': 4.681}, {'text': 'at every meeting is so that it imprints', 'start': 7666.119, 'duration': 4.801}, {'text': 'in your head that we covering this', 'start': 7668.4, 'duration': 4.64}, {'text': 'entire space of Neuroscience across', 'start': 7670.92, 'duration': 4.88}, {'text': 'species across modalities across space', 'start': 7673.04, 'duration': 6.32}, {'text': 'and across development and', 'start': 7675.8, 'duration': 3.56}, {'text': \"lifespan so there's a pile of data and\", 'start': 7680.639, 'duration': 5.08}, {'text': 'that pile is only going to grow over the', 'start': 7683.32, 'duration': 5.64}, {'text': 'next few years and in fact if everything', 'start': 7685.719, 'duration': 7.641}, {'text': \"goes in some magical plan we'll get to\", 'start': 7688.96, 'duration': 8.04}, {'text': 'paby to exabyte scale data and not too', 'start': 7693.36, 'duration': 4.759}, {'text': 'long from', 'start': 7697.0, 'duration': 3.52}, {'text': 'now which means we need to organize that', 'start': 7698.119, 'duration': 5.161}, {'text': 'data through an information lens and', 'start': 7700.52, 'duration': 4.32}, {'text': 'thinking about what kind of data it', 'start': 7703.28, 'duration': 3.359}, {'text': 'represents how do we aggregate these', 'start': 7704.84, 'duration': 3.12}, {'text': 'things so there are different kinds of', 'start': 7706.639, 'duration': 3.201}, {'text': \"data models that you're using to\", 'start': 7707.96, 'duration': 4.199}, {'text': 'describe data and the final thing in', 'start': 7709.84, 'duration': 4.399}, {'text': 'relation to that transparency bit is', 'start': 7712.159, 'duration': 4.801}, {'text': 'Providence who generated it who curated', 'start': 7714.239, 'duration': 6.561}, {'text': 'it who processed it on whom was the data', 'start': 7716.96, 'duration': 5.56}, {'text': 'acquired from', 'start': 7720.8, 'duration': 5.399}, {'text': 'Etc uh my favorite example is the Tarak', 'start': 7722.52, 'duration': 7.4}, {'text': 'and tno Atlas is how many people here', 'start': 7726.199, 'duration': 5.841}, {'text': 'know about the Tarak and tno Atlas okay', 'start': 7729.92, 'duration': 4.6}, {'text': 'there are a few people it was a single', 'start': 7732.04, 'duration': 6.48}, {'text': \"person's Atlas And it led the world of\", 'start': 7734.52, 'duration': 6.92}, {'text': 'Neuro Imaging 63y old woman a 63 year', 'start': 7738.52, 'duration': 6.159}, {'text': 'old French woman I believe yes uh and', 'start': 7741.44, 'duration': 6.4}, {'text': 'for a long time it was seen as the', 'start': 7744.679, 'duration': 6.161}, {'text': 'stereotaxic space to which everybody', 'start': 7747.84, 'duration': 5.359}, {'text': 'aligned their data whether they were', 'start': 7750.84, 'duration': 3.759}, {'text': 'doing neurosurgery whether they were', 'start': 7753.199, 'duration': 5.201}, {'text': 'doing brain mapping', 'start': 7754.599, 'duration': 3.801}, {'text': \"Etc I hope that's changing I really do\", 'start': 7759.159, 'duration': 8.56}, {'text': 'than um but we have variations we have', 'start': 7763.92, 'duration': 5.96}, {'text': 'lots of variations and we need to', 'start': 7767.719, 'duration': 3.44}, {'text': 'understand what these changes and', 'start': 7769.88, 'duration': 4.52}, {'text': 'variations impa things are so hence uh', 'start': 7771.159, 'duration': 5.601}, {'text': 'we want to understand again a single', 'start': 7774.4, 'duration': 4.839}, {'text': 'Atlas is great A single subject Atlas is', 'start': 7776.76, 'duration': 4.68}, {'text': 'great as a starting point but we need to', 'start': 7779.239, 'duration': 4.32}, {'text': 'be able to evolve from it and understand', 'start': 7781.44, 'duration': 4.159}, {'text': 'how we can bring and represent human', 'start': 7783.559, 'duration': 4.68}, {'text': 'variation or animal variation into that', 'start': 7785.599, 'duration': 5.321}, {'text': 'space and for that we need Providence if', 'start': 7788.239, 'duration': 4.761}, {'text': 'an AI model comes to our knowledge graph', 'start': 7790.92, 'duration': 3.96}, {'text': 'in the future and builds something off', 'start': 7793.0, 'duration': 4.119}, {'text': 'of it we wanted to be able to produce', 'start': 7794.88, 'duration': 5.319}, {'text': 'the data card that said I have', 'start': 7797.119, 'duration': 6.921}, {'text': 'represented to data in my model and', 'start': 7800.199, 'duration': 5.88}, {'text': \"that's a thing very easy for me to say\", 'start': 7804.04, 'duration': 5.24}, {'text': 'right now very hard to practically do', 'start': 7806.079, 'duration': 5.16}, {'text': 'when I put it up', 'start': 7809.28, 'duration': 4.48}, {'text': \"there so we've been taking ontologies\", 'start': 7811.239, 'duration': 4.161}, {'text': \"from various sources we've been taking\", 'start': 7813.76, 'duration': 4.64}, {'text': 'data sources through apis csvs Json and', 'start': 7815.4, 'duration': 5.0}, {'text': \"other things and we're using something\", 'start': 7818.4, 'duration': 4.759}, {'text': 'called link ml to build our models and', 'start': 7820.4, 'duration': 4.759}, {'text': 'that turns itself into a Knowledge Graph', 'start': 7823.159, 'duration': 3.96}, {'text': \"I've put some links out there I think\", 'start': 7825.159, 'duration': 3.761}, {'text': 'the slides will be available Yas me', 'start': 7827.119, 'duration': 4.281}, {'text': \"right to people so they're in your\", 'start': 7828.92, 'duration': 3.759}, {'text': 'emails', 'start': 7831.4, 'duration': 4.12}, {'text': 'now so the links will take you to GitHub', 'start': 7832.679, 'duration': 4.4}, {'text': \"repos and other things where we're doing\", 'start': 7835.52, 'duration': 4.639}, {'text': 'all of this work um and you can play', 'start': 7837.079, 'duration': 4.921}, {'text': 'with some of these things and on the', 'start': 7840.159, 'duration': 4.44}, {'text': 'basis of this we are either spinning off', 'start': 7842.0, 'duration': 4.48}, {'text': 'components of these models through some', 'start': 7844.599, 'duration': 4.96}, {'text': 'of these platform services that show and', 'start': 7846.48, 'duration': 5.32}, {'text': \"um Tyler talked about earlier or we're\", 'start': 7849.559, 'duration': 4.241}, {'text': 'building out toolkits to ingest', 'start': 7851.8, 'duration': 3.919}, {'text': 'different kinds of data into the space', 'start': 7853.8, 'duration': 4.319}, {'text': 'of these', 'start': 7855.719, 'duration': 2.4}, {'text': 'models I mentioned link ml link ml was', 'start': 7858.76, 'duration': 5.439}, {'text': 'started as a modeling language and I', 'start': 7861.92, 'duration': 4.44}, {'text': \"won't go into details around a project\", 'start': 7864.199, 'duration': 4.44}, {'text': 'called biolink which was supposed to', 'start': 7866.36, 'duration': 4.12}, {'text': 'integrate different kinds of knowledge', 'start': 7868.639, 'duration': 4.201}, {'text': 'sources into an integrated Knowledge', 'start': 7870.48, 'duration': 5.36}, {'text': 'Graph apply reasoners so that we can do', 'start': 7872.84, 'duration': 4.719}, {'text': 'things I mean this is the dream that all', 'start': 7875.84, 'duration': 3.96}, {'text': \"of us have I don't yet see a platform\", 'start': 7877.559, 'duration': 4.64}, {'text': 'that actually implements this', 'start': 7879.8, 'duration': 4.399}, {'text': 'but this is where we will go to an', 'start': 7882.199, 'duration': 4.601}, {'text': 'Oracle and ask questions eventually in', 'start': 7884.199, 'duration': 5.641}, {'text': 'the future and that Oracle will give us', 'start': 7886.8, 'duration': 6.279}, {'text': 'some answers that we trust uh right now', 'start': 7889.84, 'duration': 4.839}, {'text': 'some people might think that Oracle is', 'start': 7893.079, 'duration': 3.6}, {'text': \"our lens they're far from it right this\", 'start': 7894.679, 'duration': 5.121}, {'text': 'minute but this is our hope hopefully we', 'start': 7896.679, 'duration': 5.601}, {'text': 'can get to some stage of this at somewh', 'start': 7899.8, 'duration': 3.96}, {'text': 'but more specifically the reason we', 'start': 7902.28, 'duration': 3.439}, {'text': 'chose biolink as an underlying model is', 'start': 7903.76, 'duration': 3.839}, {'text': 'it already represents many different', 'start': 7905.719, 'duration': 4.52}, {'text': \"components of biology we didn't have to\", 'start': 7907.599, 'duration': 4.64}, {'text': 'reinvent many of of those classes and', 'start': 7910.239, 'duration': 4.201}, {'text': 'entities and we chose that as an', 'start': 7912.239, 'duration': 5.721}, {'text': 'underlying ontological space for', 'start': 7914.44, 'duration': 6.92}, {'text': 'us so the focus areas though I mean', 'start': 7917.96, 'duration': 4.719}, {'text': \"there's all kinds of things we could\", 'start': 7921.36, 'duration': 5.08}, {'text': 'model uh cell types anatomy and genes', 'start': 7922.679, 'duration': 6.601}, {'text': 'are key to the byan Enterprise and', 'start': 7926.44, 'duration': 4.52}, {'text': \"that's what we are trying to model and\", 'start': 7929.28, 'duration': 4.0}, {'text': \"tomorrow you'll see demos from Lydia on\", 'start': 7930.96, 'duration': 4.719}, {'text': 'how these pieces interact with each', 'start': 7933.28, 'duration': 6.08}, {'text': 'other in some of the data that she would', 'start': 7935.679, 'duration': 6.281}, {'text': 'show and some of this as I mentioned are', 'start': 7939.36, 'duration': 4.6}, {'text': 'being used for some of the services in', 'start': 7941.96, 'duration': 4.4}, {'text': 'terms of the models that feed data to', 'start': 7943.96, 'duration': 7.44}, {'text': 'those services so what we model uh donor', 'start': 7946.36, 'duration': 7.08}, {'text': 'uh Library generation spatial', 'start': 7951.4, 'duration': 4.48}, {'text': 'transcriptomics is coming online soon I', 'start': 7953.44, 'duration': 5.199}, {'text': \"think I'm looking at\", 'start': 7955.88, 'duration': 6.88}, {'text': 'p and uh it generates a Cell by Gene', 'start': 7958.639, 'duration': 6.801}, {'text': 'Matrix we are modeling Gene and genome', 'start': 7962.76, 'duration': 5.04}, {'text': 'annotation there cell annotation and', 'start': 7965.44, 'duration': 4.119}, {'text': 'anatomical structures when it comes to', 'start': 7967.8, 'duration': 5.319}, {'text': 'the tissues and samples', 'start': 7969.559, 'duration': 3.56}, {'text': 'this is another one of those figures', 'start': 7973.28, 'duration': 3.879}, {'text': 'that you imprint into your memory if', 'start': 7975.719, 'duration': 3.801}, {'text': \"you're part of ban this is the library\", 'start': 7977.159, 'duration': 4.761}, {'text': 'generation thing that Lydia kimy and', 'start': 7979.52, 'duration': 4.679}, {'text': 'many people in the minimal metadata', 'start': 7981.92, 'duration': 5.12}, {'text': 'working group together kind of worked on', 'start': 7984.199, 'duration': 5.561}, {'text': 'um and we have been modeling this in', 'start': 7987.04, 'duration': 7.199}, {'text': 'detail in our system all the way up to', 'start': 7989.76, 'duration': 7.0}, {'text': 'the sequencing core and Nemo uh so', 'start': 7994.239, 'duration': 4.241}, {'text': \"that's where we're missing some of the\", 'start': 7996.76, 'duration': 4.64}, {'text': 'data right now which is as Bend data it', 'start': 7998.48, 'duration': 4.84}, {'text': 'comes to flow hopefully we can start', 'start': 8001.4, 'duration': 4.08}, {'text': 'modeling some of those elements of cvag', 'start': 8003.32, 'duration': 4.52}, {'text': \"matrices there for the moment we've\", 'start': 8005.48, 'duration': 5.639}, {'text': 'shifted gears to the bicn data which is', 'start': 8007.84, 'duration': 5.08}, {'text': 'the whole Mouse data for which some of', 'start': 8011.119, 'duration': 3.721}, {'text': \"those things exist but they don't come\", 'start': 8012.92, 'duration': 4.239}, {'text': 'from consistent pipelines they come from', 'start': 8014.84, 'duration': 4.04}, {'text': 'different pipelines which is again', 'start': 8017.159, 'duration': 3.601}, {'text': \"reasonable for us to model but they're\", 'start': 8018.88, 'duration': 6.08}, {'text': 'different from the ban pipeline right', 'start': 8020.76, 'duration': 6.479}, {'text': \"now I'm not going to go into this I'm\", 'start': 8024.96, 'duration': 4.0}, {'text': 'just showing two different classes over', 'start': 8027.239, 'duration': 4.4}, {'text': 'here a donor class and a library G or', 'start': 8028.96, 'duration': 5.0}, {'text': 'class and it has all kinds of metadata', 'start': 8031.639, 'duration': 4.161}, {'text': 'and properties now one of the nice', 'start': 8033.96, 'duration': 4.48}, {'text': 'things about this is you can find all of', 'start': 8035.8, 'duration': 6.04}, {'text': 'this info on this page right everything', 'start': 8038.44, 'duration': 6.36}, {'text': 'is modeled everything is out', 'start': 8041.84, 'duration': 5.44}, {'text': 'there and you can go and look up the', 'start': 8044.8, 'duration': 4.04}, {'text': 'definitions and descriptions of every', 'start': 8047.28, 'duration': 4.24}, {'text': 'single term in the model and right now', 'start': 8048.84, 'duration': 4.759}, {'text': 'we have the library generation model an', 'start': 8051.52, 'duration': 3.92}, {'text': 'anatomical structure model and a genome', 'start': 8053.599, 'duration': 3.56}, {'text': 'annotation', 'start': 8055.44, 'duration': 4.199}, {'text': 'model to do spatial', 'start': 8057.159, 'duration': 5.841}, {'text': \"transcriptomics it will come soon it's\", 'start': 8059.639, 'duration': 4.641}, {'text': \"it'll be the next figure that's\", 'start': 8063.0, 'duration': 4.079}, {'text': 'imprinted in your heads uh when when', 'start': 8064.28, 'duration': 3.879}, {'text': 'this', 'start': 8067.079, 'duration': 4.56}, {'text': 'is so how do we model uh how do we', 'start': 8068.159, 'duration': 5.48}, {'text': 'collect and verify the metadata so they', 'start': 8071.639, 'duration': 3.96}, {'text': 'by can working groups the library', 'start': 8073.639, 'duration': 4.0}, {'text': 'generation spatial transcrip toats and', 'start': 8075.599, 'duration': 3.761}, {'text': 'the metadata and ontology working group', 'start': 8077.639, 'duration': 4.0}, {'text': 'which Patrick leads kind of reviews a', 'start': 8079.36, 'duration': 3.96}, {'text': 'lot of this work that goes on in the', 'start': 8081.639, 'duration': 3.48}, {'text': 'groups and helps us kind of stitch', 'start': 8083.32, 'duration': 4.839}, {'text': 'things together uh it also Associates', 'start': 8085.119, 'duration': 4.801}, {'text': \"with existing ontologies you know we're\", 'start': 8088.159, 'duration': 3.321}, {'text': 'not building this out in the the void', 'start': 8089.92, 'duration': 3.88}, {'text': 'there is already a lot of existing work', 'start': 8091.48, 'duration': 4.92}, {'text': 'in terms of this information space uh', 'start': 8093.8, 'duration': 4.72}, {'text': 'and it introduces standards when', 'start': 8096.4, 'duration': 4.36}, {'text': 'bringing these elements together now', 'start': 8098.52, 'duration': 4.159}, {'text': 'there are other consorti collaborators', 'start': 8100.76, 'duration': 3.64}, {'text': \"so for example we're working with open\", 'start': 8102.679, 'duration': 4.161}, {'text': 'minds in the EU which which came out of', 'start': 8104.4, 'duration': 5.96}, {'text': 'the human brain project um Dandy and', 'start': 8106.84, 'duration': 6.96}, {'text': 'other archives uh brain connects as well', 'start': 8110.36, 'duration': 4.799}, {'text': 'as the Allen Institute for neural', 'start': 8113.8, 'duration': 4.12}, {'text': 'Dynamics and trying to get a space of', 'start': 8115.159, 'duration': 5.361}, {'text': 'neuroscientific knowledge come together', 'start': 8117.92, 'duration': 4.88}, {'text': \"so one we're starting in band with our\", 'start': 8120.52, 'duration': 4.119}, {'text': 'focus on these Library generation', 'start': 8122.8, 'duration': 4.759}, {'text': \"anatomy and other things it's not just\", 'start': 8124.639, 'duration': 5.161}, {'text': 'limited to that we want to bring the', 'start': 8127.559, 'duration': 6.52}, {'text': 'world of Neuroscience into this Mod', 'start': 8129.8, 'duration': 4.279}, {'text': \"Space we use Google Sheets it's a\", 'start': 8134.239, 'duration': 4.121}, {'text': 'collaborative environment to collect and', 'start': 8136.639, 'duration': 3.96}, {'text': 'review metadata Fields', 'start': 8138.36, 'duration': 5.16}, {'text': 'uh you will go through an exercise with', 'start': 8140.599, 'duration': 5.241}, {'text': 'this in the next half an hour after I', 'start': 8143.52, 'duration': 4.4}, {'text': \"finished talking so you'll get to see a\", 'start': 8145.84, 'duration': 4.0}, {'text': 'taste of how you could build a model how', 'start': 8147.92, 'duration': 4.199}, {'text': 'you could contribute to an ecosystem of', 'start': 8149.84, 'duration': 5.2}, {'text': 'building a model uh this ends up using', 'start': 8152.119, 'duration': 6.08}, {'text': 'linkl schema sheets and our by can', 'start': 8155.04, 'duration': 5.48}, {'text': 'knowledge based interaction Library', 'start': 8158.199, 'duration': 4.52}, {'text': 'interaction toolkit library to create', 'start': 8160.52, 'duration': 3.719}, {'text': \"the model behind the scenes and you'll\", 'start': 8162.719, 'duration': 5.44}, {'text': 'get to see some of that how do we test', 'start': 8164.239, 'duration': 6.0}, {'text': 'there is data the one way to test that', 'start': 8168.159, 'duration': 4.841}, {'text': 'models perform a row is by sending data', 'start': 8170.239, 'duration': 4.88}, {'text': 'through it uh this is one of those', 'start': 8173.0, 'duration': 4.199}, {'text': 'things that Lydia imprints on us every', 'start': 8175.119, 'duration': 5.881}, {'text': 'time we talk about a model is get data', 'start': 8177.199, 'duration': 7.801}, {'text': \"through it otherwise it's not a model uh\", 'start': 8181.0, 'duration': 6.719}, {'text': \"it's a model in the abstract sense so\", 'start': 8185.0, 'duration': 4.76}, {'text': \"for the genome annotation model we've\", 'start': 8187.719, 'duration': 5.72}, {'text': 'pulled GFF files from Ensemble and ncbi', 'start': 8189.76, 'duration': 7.12}, {'text': 'and represented it in our model for', 'start': 8193.439, 'duration': 5.24}, {'text': \"Library generation we've taken data from\", 'start': 8196.88, 'duration': 3.96}, {'text': 'the N portal and represent it in the', 'start': 8198.679, 'duration': 4.561}, {'text': 'model for the anatomical structure model', 'start': 8200.84, 'duration': 4.32}, {'text': 'we are using the brain Atlas ontology', 'start': 8203.24, 'duration': 3.72}, {'text': \"work there's a lot of work going on so\", 'start': 8205.16, 'duration': 3.479}, {'text': \"we're trying to pull that in in\", 'start': 8206.96, 'duration': 5.88}, {'text': 'representation into the anatomy', 'start': 8208.639, 'duration': 4.201}, {'text': 'model so where should this knowledge', 'start': 8213.399, 'duration': 5.28}, {'text': 'graph go and how you can', 'start': 8215.8, 'duration': 5.96}, {'text': 'help we love this picture uh it', 'start': 8218.679, 'duration': 5.081}, {'text': 'represents a lot of information a lot of', 'start': 8221.76, 'duration': 4.639}, {'text': 'knowledge this came out of the bicn this', 'start': 8223.76, 'duration': 4.16}, {'text': 'was multi', 'start': 8226.399, 'duration': 5.841}, {'text': 'species this Mike made this picture uh', 'start': 8227.92, 'duration': 7.08}, {'text': \"he's very proud of\", 'start': 8232.24, 'duration': 2.76}, {'text': 'it U but if you think about all the', 'start': 8236.88, 'duration': 4.759}, {'text': 'pieces of information knowledge stored', 'start': 8239.84, 'duration': 4.36}, {'text': 'in just this picture do we have a place', 'start': 8241.639, 'duration': 4.361}, {'text': 'that a system could look at and query', 'start': 8244.2, 'duration': 4.319}, {'text': 'all these pieces right now would say', 'start': 8246.0, 'duration': 5.2}, {'text': 'no especially if you say does it connect', 'start': 8248.519, 'duration': 5.92}, {'text': 'down to the data that produce any', 'start': 8251.2, 'duration': 4.72}, {'text': 'element of this', 'start': 8254.439, 'duration': 4.2}, {'text': \"picture and that's our intent is to take\", 'start': 8255.92, 'duration': 4.439}, {'text': 'something like this and create the', 'start': 8258.639, 'duration': 4.241}, {'text': 'structure that allows us to drill down', 'start': 8260.359, 'duration': 4.521}, {'text': 'from an abstract level of', 'start': 8262.88, 'duration': 4.2}, {'text': 'information all the way down to the data', 'start': 8264.88, 'duration': 6.36}, {'text': 'that prod it and correspondingly related', 'start': 8267.08, 'duration': 7.359}, {'text': 'to other sources of information and', 'start': 8271.24, 'duration': 5.8}, {'text': 'data same thing with all the papers in', 'start': 8274.439, 'duration': 4.801}, {'text': 'these three collections of Publications', 'start': 8277.04, 'duration': 3.88}, {'text': \"right there's lots of information\", 'start': 8279.24, 'duration': 4.239}, {'text': \"there's lots of Publications and today\", 'start': 8280.92, 'duration': 5.04}, {'text': 'various Transformer based models can', 'start': 8283.479, 'duration': 4.361}, {'text': 'extract knowledge out of Publications at', 'start': 8285.96, 'duration': 4.16}, {'text': 'different levels there are companies out', 'start': 8287.84, 'duration': 4.839}, {'text': 'there consensus lsit Etc that are', 'start': 8290.12, 'duration': 5.559}, {'text': 'pulling out information from data', 'start': 8292.679, 'duration': 5.84}, {'text': \"they're still very shallow in some sense\", 'start': 8295.679, 'duration': 5.121}, {'text': 'relative to the depth of data that these', 'start': 8298.519, 'duration': 4.601}, {'text': 'papers contained so we hope that some of', 'start': 8300.8, 'duration': 3.919}, {'text': 'that will again link up with the', 'start': 8303.12, 'duration': 2.92}, {'text': \"knowledge graph we don't have to\", 'start': 8304.719, 'duration': 3.6}, {'text': 'replicate those things again if we', 'start': 8306.04, 'duration': 3.88}, {'text': 'understand what the entities are in', 'start': 8308.319, 'duration': 3.601}, {'text': 'these spaces we can link it up with the', 'start': 8309.92, 'duration': 5.04}, {'text': 'knowledge gra I wanted to show this just', 'start': 8311.92, 'duration': 4.639}, {'text': 'briefly for now this is one of my', 'start': 8314.96, 'duration': 4.28}, {'text': \"favorite recent examples I'm sure all of\", 'start': 8316.559, 'duration': 4.241}, {'text': \"you have yours and there'll be an\", 'start': 8319.24, 'duration': 4.92}, {'text': 'opportunity in the next SE next section', 'start': 8320.8, 'duration': 6.639}, {'text': 'today for you to tell me your favorite', 'start': 8324.16, 'duration': 5.88}, {'text': 'portal that exists that we get to play', 'start': 8327.439, 'duration': 3.96}, {'text': 'with uh', 'start': 8330.04, 'duration': 5.519}, {'text': \"this is Civic DP it's built around um\", 'start': 8331.399, 'duration': 6.401}, {'text': 'discovering supported clinical', 'start': 8335.559, 'duration': 5.681}, {'text': 'interpretations of mutations related to', 'start': 8337.8, 'duration': 7.2}, {'text': \"cancer it's not my fi but I like what\", 'start': 8341.24, 'duration': 6.68}, {'text': 'they have built around it and they have', 'start': 8345.0, 'duration': 5.28}, {'text': \"built a social effort of saying who's\", 'start': 8347.92, 'duration': 4.519}, {'text': 'contributing information to this they', 'start': 8350.28, 'duration': 4.039}, {'text': 'have built evidence and assertion', 'start': 8352.439, 'duration': 4.561}, {'text': 'statements and they connect this down to', 'start': 8354.319, 'duration': 5.16}, {'text': 'gen and variants and Publications in', 'start': 8357.0, 'duration': 4.439}, {'text': 'various ways they have a curation', 'start': 8359.479, 'duration': 4.04}, {'text': 'process that they have integrated that', 'start': 8361.439, 'duration': 4.441}, {'text': 'allows people to contribute or revise', 'start': 8363.519, 'duration': 5.521}, {'text': 'assertions or pieces of knowledge um and', 'start': 8365.88, 'duration': 7.479}, {'text': 'so overall while this is not my domain I', 'start': 8369.04, 'duration': 6.84}, {'text': 'like the structure they have implemented', 'start': 8373.359, 'duration': 4.96}, {'text': \"and I'm a copycat in many ways so I'd\", 'start': 8375.88, 'duration': 4.479}, {'text': 'like to just take this and understand', 'start': 8378.319, 'duration': 4.721}, {'text': 'what I can leverage from this to be able', 'start': 8380.359, 'duration': 5.681}, {'text': \"to play with so I'll make all of you be\", 'start': 8383.04, 'duration': 5.8}, {'text': 'copycats later on in the Hands-On with', 'start': 8386.04, 'duration': 5.48}, {'text': 'those statistics there uh', 'start': 8388.84, 'duration': 3.559}, {'text': 'uh', 'start': 8391.52, 'duration': 5.64}, {'text': \"total yeah it's really\", 'start': 8392.399, 'duration': 4.761}, {'text': 'hard we should not go to the', 'start': 8397.28, 'duration': 6.32}, {'text': \"backround just temporarily I'll do oh no\", 'start': 8400.96, 'duration': 6.2}, {'text': 'we have external light sorry to M I', 'start': 8403.6, 'duration': 5.56}, {'text': 'would have to bring the shades down but', 'start': 8407.16, 'duration': 5.36}, {'text': 'there statistics are around um number of', 'start': 8409.16, 'duration': 6.4}, {'text': 'assertions are EV pieces of evidence uh', 'start': 8412.52, 'duration': 5.12}, {'text': 'total number of variance molecular', 'start': 8415.56, 'duration': 4.4}, {'text': 'profiles including kind of social things', 'start': 8417.64, 'duration': 4.679}, {'text': 'like total number of contributors total', 'start': 8419.96, 'duration': 4.64}, {'text': 'number of diseases therapies sources of', 'start': 8422.319, 'duration': 4.761}, {'text': \"information so it's it's a really nice\", 'start': 8424.6, 'duration': 6.08}, {'text': 'summary of the state in that field that', 'start': 8427.08, 'duration': 5.96}, {'text': \"comes together I'd like to do something\", 'start': 8430.68, 'duration': 5.96}, {'text': 'similar for the state in our field if', 'start': 8433.04, 'duration': 6.399}, {'text': \"possible okay so we've been building out\", 'start': 8436.64, 'duration': 4.36}, {'text': 'as a prototype a knowledge graft', 'start': 8439.439, 'duration': 3.601}, {'text': 'infrastructure to connect and structure', 'start': 8441.0, 'duration': 4.2}, {'text': 'Neuroscience knowledge in just from', 'start': 8443.04, 'duration': 4.12}, {'text': 'different sources scientific literature', 'start': 8445.2, 'duration': 4.72}, {'text': 'ontologies analyses uh facilitate a', 'start': 8447.16, 'duration': 4.68}, {'text': 'collaborative knowled sharing ecosystem', 'start': 8449.92, 'duration': 3.36}, {'text': 'across researchers scientists and', 'start': 8451.84, 'duration': 2.44}, {'text': 'clinical', 'start': 8453.28, 'duration': 3.4}, {'text': 'practitioners and provide a platform for', 'start': 8454.28, 'duration': 4.68}, {'text': 'delivering such evidence-based', 'start': 8456.68, 'duration': 4.24}, {'text': 'insights we hope that this will', 'start': 8458.96, 'duration': 3.92}, {'text': 'complement the services provided by the', 'start': 8460.92, 'duration': 3.399}, {'text': 'brain knowledge platform which is', 'start': 8462.88, 'duration': 3.28}, {'text': 'putting out all these nice microservices', 'start': 8464.319, 'duration': 3.16}, {'text': 'where you can connect and create', 'start': 8466.16, 'duration': 3.199}, {'text': \"workflows here we're trying to really\", 'start': 8467.479, 'duration': 5.601}, {'text': 'get out to that evidence level uh can we', 'start': 8469.359, 'duration': 5.401}, {'text': 'get all the different ways in which', 'start': 8473.08, 'duration': 4.0}, {'text': 'people are processing data and get', 'start': 8474.76, 'duration': 6.32}, {'text': 'information out not as specific products', 'start': 8477.08, 'duration': 7.88}, {'text': 'but as the state of knowledge in our', 'start': 8481.08, 'duration': 6.96}, {'text': 'community so we want information from', 'start': 8484.96, 'duration': 5.16}, {'text': 'heterogeneous sources and', 'start': 8488.04, 'duration': 4.96}, {'text': 'consorti we want semantic search and', 'start': 8490.12, 'duration': 4.84}, {'text': 'analytics or reasoning capabilities', 'start': 8493.0, 'duration': 4.12}, {'text': 'around these graphs and we hope that', 'start': 8494.96, 'duration': 4.08}, {'text': 'this graph itself is useful to any of', 'start': 8497.12, 'duration': 4.68}, {'text': \"you doing AIML work right it's a source\", 'start': 8499.04, 'duration': 4.56}, {'text': \"of knowledge it's a source of curated\", 'start': 8501.8, 'duration': 3.519}, {'text': 'knowledge so you should be able to', 'start': 8503.6, 'duration': 4.56}, {'text': \"leverage it in fact there's an entire\", 'start': 8505.319, 'duration': 7.201}, {'text': 'set of people doing graph based llms now', 'start': 8508.16, 'duration': 6.68}, {'text': 'uh not just sequence and meta just', 'start': 8512.52, 'duration': 5.2}, {'text': 'published their four word four next word', 'start': 8514.84, 'duration': 5.519}, {'text': \"prediction sequence model so there's the\", 'start': 8517.72, 'duration': 4.44}, {'text': 'space of architectures that are coming', 'start': 8520.359, 'duration': 4.0}, {'text': 'online that are incredible and could', 'start': 8522.16, 'duration': 4.6}, {'text': \"lever exist there's already Rags that do\", 'start': 8524.359, 'duration': 4.801}, {'text': 'Vector databases as well as graph', 'start': 8526.76, 'duration': 5.719}, {'text': 'databases um so hopefully something like', 'start': 8529.16, 'duration': 4.92}, {'text': 'this with structured knowledge will help', 'start': 8532.479, 'duration': 3.641}, {'text': 'any of you doing some of those things', 'start': 8534.08, 'duration': 3.56}, {'text': 'and then the final thing that we are', 'start': 8536.12, 'duration': 4.68}, {'text': 'hoping to do is uh Mike mentioned Gene', 'start': 8537.64, 'duration': 5.96}, {'text': 'cards and self- head cards we want to', 'start': 8540.8, 'duration': 4.519}, {'text': 'kind of generalize that concept to', 'start': 8543.6, 'duration': 4.2}, {'text': \"entity cards given an entity that you're\", 'start': 8545.319, 'duration': 5.12}, {'text': 'looking at what is the view of that', 'start': 8547.8, 'duration': 5.92}, {'text': 'entity that a scientist or if you have', 'start': 8550.439, 'duration': 5.761}, {'text': 'different people looking at that entity', 'start': 8553.72, 'duration': 4.24}, {'text': 'how would they want to view it so that', 'start': 8556.2, 'duration': 3.159}, {'text': 'it provides the most relevant', 'start': 8557.96, 'duration': 4.2}, {'text': 'information to', 'start': 8559.359, 'duration': 2.801}, {'text': 'them so as next steps we hope to', 'start': 8563.52, 'duration': 5.48}, {'text': 'integrate our AI tool kits a lot of our', 'start': 8566.76, 'duration': 5.52}, {'text': 'work in the AI ml NLB space it has been', 'start': 8569.0, 'duration': 5.359}, {'text': 'around validation and benchmarking', 'start': 8572.28, 'duration': 4.0}, {'text': 'Because the actual tools are moving at', 'start': 8574.359, 'duration': 4.721}, {'text': \"Breck speed we can't keep up with it you\", 'start': 8576.28, 'duration': 4.48}, {'text': \"blink your eye and there's a new model\", 'start': 8579.08, 'duration': 5.52}, {'text': 'out uh what we are asking is how do we', 'start': 8580.76, 'duration': 5.719}, {'text': 'validate and Benchmark these models as', 'start': 8584.6, 'duration': 3.28}, {'text': \"they're coming out so one of the things\", 'start': 8586.479, 'duration': 2.88}, {'text': 'we have is something called construct', 'start': 8587.88, 'duration': 3.68}, {'text': 'Tech similarity which again takes in', 'start': 8589.359, 'duration': 4.841}, {'text': 'this domain knowledge and elence', 'start': 8591.56, 'duration': 4.919}, {'text': 'together to say how are Concepts', 'start': 8594.2, 'duration': 5.88}, {'text': 'represented in any specific field uh the', 'start': 8596.479, 'duration': 5.681}, {'text': 'many things over which we were very', 'start': 8600.08, 'duration': 4.6}, {'text': 'surprised that zero shot approaches from', 'start': 8602.16, 'duration': 5.4}, {'text': \"llms work crazy well I'll give an\", 'start': 8604.68, 'duration': 5.12}, {'text': 'example this has nothing to do with back', 'start': 8607.56, 'duration': 6.24}, {'text': 'hand suicide ideation prediction so we', 'start': 8609.8, 'duration': 5.24}, {'text': 'have data from something called the', 'start': 8613.8, 'duration': 3.8}, {'text': 'crisis text line where people chat with', 'start': 8615.04, 'duration': 5.16}, {'text': 'counselors and the counselors label what', 'start': 8617.6, 'duration': 5.48}, {'text': 'kind of uh crisis the person is playing', 'start': 8620.2, 'duration': 6.52}, {'text': 'with we asked an elol given that', 'start': 8623.08, 'duration': 7.0}, {'text': 'conversation can you predict between', 'start': 8626.72, 'duration': 7.2}, {'text': 'this category or not for all the', 'start': 8630.08, 'duration': 6.84}, {'text': \"categories that's a very crazy thing to\", 'start': 8633.92, 'duration': 4.8}, {'text': \"ask an L you're asking it for a\", 'start': 8636.92, 'duration': 4.72}, {'text': 'probability probabilistic prediction and', 'start': 8638.72, 'duration': 5.679}, {'text': 'saying this probability should add up to', 'start': 8641.64, 'duration': 7.28}, {'text': 'one and in 98% of the cases that now', 'start': 8644.399, 'duration': 7.801}, {'text': \"this is not gbd4 it's not online because\", 'start': 8648.92, 'duration': 5.2}, {'text': \"this is highly sensitive data it's an\", 'start': 8652.2, 'duration': 5.56}, {'text': 'open source Al which we could run', 'start': 8654.12, 'duration': 8.12}, {'text': 'locally it was a are or better with some', 'start': 8657.76, 'duration': 8.519}, {'text': 'of the human curated versions of this', 'start': 8662.24, 'duration': 6.52}, {'text': 'when you ask other people to do it so', 'start': 8666.279, 'duration': 4.721}, {'text': 'things are changing very rapidly we', 'start': 8668.76, 'duration': 4.519}, {'text': 'absolutely what was the outcome they', 'start': 8671.0, 'duration': 4.319}, {'text': 'predicting predicting whether what', 'start': 8673.279, 'duration': 4.881}, {'text': 'crisis that conversation was about', 'start': 8675.319, 'duration': 5.681}, {'text': 'nature yeah the nature so it could be', 'start': 8678.16, 'duration': 4.4}, {'text': \"you know somebody's like this for\", 'start': 8681.0, 'duration': 4.92}, {'text': 'suicide somebody has family trauma Etc', 'start': 8682.56, 'duration': 5.68}, {'text': 'so there were 13 different crises that', 'start': 8685.92, 'duration': 5.24}, {'text': 'people called in about um and we had', 'start': 8688.24, 'duration': 4.96}, {'text': 'normal machine learning models alongside', 'start': 8691.16, 'duration': 4.36}, {'text': 'it but this was an effort of just saying', 'start': 8693.2, 'duration': 4.32}, {'text': 'if we put that', 'start': 8695.52, 'duration': 4.799}, {'text': 'conversation into an llm how well could', 'start': 8697.52, 'duration': 7.52}, {'text': 'it predict what crisis that was about um', 'start': 8700.319, 'duration': 6.96}, {'text': \"and it and it's not just predicting\", 'start': 8705.04, 'duration': 3.52}, {'text': \"right it's not just labeling we were\", 'start': 8707.279, 'duration': 2.801}, {'text': 'asking to give a probability we were', 'start': 8708.56, 'duration': 3.919}, {'text': 'actually using the probability to create', 'start': 8710.08, 'duration': 6.96}, {'text': 'RC Au curves from it and you know I say', 'start': 8712.479, 'duration': 6.441}, {'text': 'you were asking it to give a probability', 'start': 8717.04, 'duration': 4.2}, {'text': 'I have no idea how it estimates it or', 'start': 8718.92, 'duration': 6.72}, {'text': 'does that right but this was where the', 'start': 8721.24, 'duration': 6.84}, {'text': 'math of llms or math inside llms is', 'start': 8725.64, 'duration': 5.2}, {'text': 'still a mysterious SP and if any of you', 'start': 8728.08, 'duration': 4.68}, {'text': \"know something about it I'd be happy to\", 'start': 8730.84, 'duration': 2.84}, {'text': 'chat', 'start': 8732.76, 'duration': 4.12}, {'text': 'more Yes actually I want me add one', 'start': 8733.68, 'duration': 5.04}, {'text': 'motivation for me is that if you think', 'start': 8736.88, 'duration': 4.399}, {'text': 'about the current if you think about', 'start': 8738.72, 'duration': 4.559}, {'text': 'current neuron netor deep learning all', 'start': 8741.279, 'duration': 4.601}, {'text': 'these things even though it has very', 'start': 8743.279, 'duration': 5.08}, {'text': 'Advanced you know in terms of the past', 'start': 8745.88, 'duration': 6.04}, {'text': 'few years but them know nowhere near how', 'start': 8748.359, 'duration': 6.361}, {'text': 'human brain function I think there are a', 'start': 8751.92, 'duration': 5.359}, {'text': 'lot of things we might be able to learn', 'start': 8754.72, 'duration': 5.24}, {'text': 'from what you know from the brain to', 'start': 8757.279, 'duration': 5.601}, {'text': 'improve the current neural network and', 'start': 8759.96, 'duration': 5.56}, {'text': 'you know and all these AI', 'start': 8762.88, 'duration': 5.04}, {'text': 'methodology absolutely and you know I', 'start': 8765.52, 'duration': 3.959}, {'text': \"know we're having a workshop here but\", 'start': 8767.92, 'duration': 3.12}, {'text': \"there's so many people in this building\", 'start': 8769.479, 'duration': 4.441}, {'text': 'and next door uh who I think would love', 'start': 8771.04, 'duration': 5.279}, {'text': 'to chat with you about some of those', 'start': 8773.92, 'duration': 5.399}, {'text': 'components uh the second thing we want', 'start': 8776.319, 'duration': 4.881}, {'text': 'to do as next St so this is connecting', 'start': 8779.319, 'duration': 3.801}, {'text': 'assertions to evidence I think', 'start': 8781.2, 'duration': 4.8}, {'text': 'assertions are sloppy in science we like', 'start': 8783.12, 'duration': 5.8}, {'text': 'the flexibility of language to not make', 'start': 8786.0, 'duration': 4.319}, {'text': 'concrete', 'start': 8788.92, 'duration': 5.559}, {'text': 'statements so I want to capture that and', 'start': 8790.319, 'duration': 7.16}, {'text': 'keep refining over time how we make more', 'start': 8794.479, 'duration': 4.041}, {'text': 'concrete', 'start': 8797.479, 'duration': 3.561}, {'text': 'statements uh and furthermore not just', 'start': 8798.52, 'duration': 4.12}, {'text': \"evidence from publication that's what we\", 'start': 8801.04, 'duration': 3.72}, {'text': 'rely on mostly but there as everybody', 'start': 8802.64, 'duration': 3.799}, {'text': 'probably here knows of the file drawer', 'start': 8804.76, 'duration': 3.92}, {'text': 'effect many of the non-findings are', 'start': 8806.439, 'duration': 3.761}, {'text': \"never put out there so there's a sign\", 'start': 8808.68, 'duration': 3.56}, {'text': 'significantly', 'start': 8810.2, 'duration': 4.84}, {'text': 'strong obligation bias out there towards', 'start': 8812.24, 'duration': 6.079}, {'text': 'positive findings so by connecting to', 'start': 8815.04, 'duration': 6.96}, {'text': 'data we take away that publication now', 'start': 8818.319, 'duration': 5.12}, {'text': \"we're not saying we ignore publication\", 'start': 8822.0, 'duration': 2.88}, {'text': \"there's a lot of scientific work that\", 'start': 8823.439, 'duration': 3.401}, {'text': 'goes into a publication and we want to', 'start': 8824.88, 'duration': 3.92}, {'text': 'capture that but by connecting to data', 'start': 8826.84, 'duration': 4.439}, {'text': 'we provide a pathway for a future system', 'start': 8828.8, 'duration': 5.08}, {'text': 'to go directly to data to analyze all', 'start': 8831.279, 'duration': 4.801}, {'text': 'these things finally this is going to be', 'start': 8833.88, 'duration': 3.76}, {'text': \"the most challenging things and I can't\", 'start': 8836.08, 'duration': 5.12}, {'text': 'tell you when or how we would do this', 'start': 8837.64, 'duration': 6.44}, {'text': 'but I welcome any kind of advice Insight', 'start': 8841.2, 'duration': 6.079}, {'text': 'or collaborators in this space how do we', 'start': 8844.08, 'duration': 5.88}, {'text': \"know what we don't\", 'start': 8847.279, 'duration': 5.401}, {'text': \"know what's missing in our knowledge\", 'start': 8849.96, 'duration': 4.68}, {'text': 'graph I mean we know the things that we', 'start': 8852.68, 'duration': 4.04}, {'text': \"know and they're not represented that's\", 'start': 8854.64, 'duration': 3.44}, {'text': 'the easy', 'start': 8856.72, 'duration': 5.16}, {'text': 'part uh but how do we get to actual gaps', 'start': 8858.08, 'duration': 6.6}, {'text': 'that a next experiment could drive how', 'start': 8861.88, 'duration': 5.559}, {'text': \"do we get to what's missing so we can do\", 'start': 8864.68, 'duration': 4.28}, {'text': \"the easy part of this there's a lot of\", 'start': 8867.439, 'duration': 4.88}, {'text': 'lwh hanging food uh low hanging uh', 'start': 8868.96, 'duration': 5.359}, {'text': 'efforts in the Gap analysis space we can', 'start': 8872.319, 'duration': 3.881}, {'text': 'say what species are not represented', 'start': 8874.319, 'duration': 4.04}, {'text': 'what ages are not represented uh what', 'start': 8876.2, 'duration': 4.159}, {'text': 'brain regions are not represented those', 'start': 8878.359, 'duration': 4.321}, {'text': 'are the easy things what genes were', 'start': 8880.359, 'duration': 5.04}, {'text': 'never touched on uh those are the easy', 'start': 8882.68, 'duration': 5.12}, {'text': \"things that we can do but it's I hope\", 'start': 8885.399, 'duration': 4.121}, {'text': 'that the intent of a graph is to go', 'start': 8887.8, 'duration': 5.679}, {'text': \"beyond that so with that I'll stop and\", 'start': 8889.52, 'duration': 5.4}, {'text': \"then I'm going to hand it over to some\", 'start': 8893.479, 'duration': 4.161}, {'text': 'folks to run to make you actually do', 'start': 8894.92, 'duration': 5.72}, {'text': 'something', 'start': 8897.64, 'duration': 3.0}, {'text': 'okay questions I can take a few', 'start': 8901.88, 'duration': 5.04}, {'text': \"questions when you set up but we'll have\", 'start': 8904.279, 'duration': 6.361}, {'text': 'time for discussion after the Hands-On', 'start': 8906.92, 'duration': 3.72}, {'text': 'session there are cookies if you want', 'start': 8925.279, 'duration': 10.0}, {'text': 'to Prim you for the handson session', 'start': 8930.2, 'duration': 5.079}, {'text': 'yes more', 'start': 8941.8, 'duration': 9.76}, {'text': \"cop sure but I'm sure no I'm not sure\", 'start': 8944.279, 'duration': 7.281}, {'text': \"I'm\", 'start': 8970.76, 'duration': 2.679}, {'text': 'no we have to do', 'start': 8973.72, 'duration': 6.52}, {'text': 'that no now I have to', 'start': 8976.319, 'duration': 3.921}, {'text': 'find so um this would be like we have um', 'start': 8984.359, 'duration': 7.481}, {'text': 'two or three exercise during this P', 'start': 8989.24, 'duration': 4.96}, {'text': 'session by the way my name is s and I', 'start': 8991.84, 'duration': 4.76}, {'text': 'work in the spirit for for', 'start': 8994.2, 'duration': 6.68}, {'text': 'S and um but during this session that um', 'start': 8996.6, 'duration': 7.0}, {'text': 'you know we would be happy to um get any', 'start': 9000.88, 'duration': 4.559}, {'text': 'feedback during the discussion but we', 'start': 9003.6, 'duration': 4.4}, {'text': 'were also like thinking that maybe when', 'start': 9005.439, 'duration': 4.241}, {'text': 'you will be like playing with some of', 'start': 9008.0, 'duration': 3.92}, {'text': 'the tools or just looking at the', 'start': 9009.68, 'duration': 5.12}, {'text': 'tools okay uh you might want to share', 'start': 9011.92, 'duration': 3.76}, {'text': 'your', 'start': 9014.8, 'duration': 4.24}, {'text': 'feedback and I created this this is like', 'start': 9015.68, 'duration': 7.92}, {'text': \"in the bike on uh Google drive but we're\", 'start': 9019.04, 'duration': 6.56}, {'text': 'thinking that you can put like some', 'start': 9023.6, 'duration': 3.6}, {'text': 'feedback here also like you can put', 'start': 9025.6, 'duration': 4.32}, {'text': 'links and anything you you think it', 'start': 9027.2, 'duration': 5.64}, {'text': 'might be useful for us and we were just', 'start': 9029.92, 'duration': 4.8}, {'text': 'thinking that if you can just provide', 'start': 9032.84, 'duration': 5.4}, {'text': 'your name or email or both that in case', 'start': 9034.72, 'duration': 8.12}, {'text': 'we want to follow up we are able to so', 'start': 9038.24, 'duration': 8.28}, {'text': \"that's you your find in the can I say\", 'start': 9042.84, 'duration': 6.36}, {'text': 'one more thing yes if you do take notes', 'start': 9046.52, 'duration': 5.2}, {'text': \"down in a path or something I'm happy to\", 'start': 9049.2, 'duration': 4.36}, {'text': 'go around with my phone and take', 'start': 9051.72, 'duration': 4.639}, {'text': \"pictures I've found that lots of very\", 'start': 9053.56, 'duration': 5.879}, {'text': 'nice Concords that take that and get', 'start': 9056.359, 'duration': 4.96}, {'text': 'structured for me', 'start': 9059.439, 'duration': 4.521}, {'text': 'today okay', 'start': 9061.319, 'duration': 5.521}, {'text': 'um we will try to at the end of this', 'start': 9063.96, 'duration': 5.359}, {'text': 'Workshop try to match all different', 'start': 9066.84, 'duration': 4.96}, {'text': 'sours of recording notes taking', 'start': 9069.319, 'duration': 6.521}, {'text': \"feedbacks taking so let's\", 'start': 9071.8, 'duration': 4.04}, {'text': 'seea yeah but that might be yeah so so', 'start': 9076.359, 'duration': 5.161}, {'text': \"you don't forget so you can start this\", 'start': 9079.24, 'duration': 5.68}, {'text': 'um okay so at the beginning like as the', 'start': 9081.52, 'duration': 7.32}, {'text': 'first uh part will be like the part um', 'start': 9084.92, 'duration': 5.84}, {'text': 'closely related to building and', 'start': 9088.84, 'duration': 5.0}, {'text': 'modifying the the model so I thought', 'start': 9090.76, 'duration': 5.04}, {'text': 'that we like such a mention of things', 'start': 9093.84, 'duration': 3.68}, {'text': 'but I would like to just give you like', 'start': 9095.8, 'duration': 4.08}, {'text': 'very short introduction how we build', 'start': 9097.52, 'duration': 4.839}, {'text': 'model based on the metadata set of', 'start': 9099.88, 'duration': 5.36}, {'text': 'metadata that scientists agree in order', 'start': 9102.359, 'duration': 6.161}, {'text': 'to use this Tool uh to build like data', 'start': 9105.24, 'duration': 5.88}, {'text': 'with some specific structure yeah so', 'start': 9108.52, 'duration': 5.44}, {'text': 'here and I put like all the links so you', 'start': 9111.12, 'duration': 6.4}, {'text': 'can you can also follow with this so the', 'start': 9113.96, 'duration': 6.04}, {'text': 'main uh repository is', 'start': 9117.52, 'duration': 6.0}, {'text': 'the is the data model repository and', 'start': 9120.0, 'duration': 7.319}, {'text': 'already s showed you that you can go to', 'start': 9123.52, 'duration': 6.36}, {'text': 'this uh documentation and you have a', 'start': 9127.319, 'duration': 5.201}, {'text': 'description of the models right now we', 'start': 9129.88, 'duration': 5.24}, {'text': 'have like Library generation anatomical', 'start': 9132.52, 'duration': 6.16}, {'text': 'structure and genome anotation uh again', 'start': 9135.12, 'duration': 5.88}, {'text': 'like we will be help will be like having', 'start': 9138.68, 'duration': 5.4}, {'text': 'soon like um special transcrip toing and', 'start': 9141.0, 'duration': 5.84}, {'text': 'also we have a more complex of like', 'start': 9144.08, 'duration': 8.56}, {'text': 'mother for donor and uh and for cell', 'start': 9146.84, 'duration': 7.8}, {'text': 'uh', 'start': 9152.64, 'duration': 5.799}, {'text': \"yeah um but um and the don't know part\", 'start': 9154.64, 'duration': 7.679}, {'text': 'will be part of today hands on and you', 'start': 9158.439, 'duration': 6.281}, {'text': 'can and you can also like see some of', 'start': 9162.319, 'duration': 5.441}, {'text': 'the visualiz visualization so you can', 'start': 9164.72, 'duration': 5.599}, {'text': 'play with it but basically like uh as we', 'start': 9167.76, 'duration': 6.599}, {'text': 'were saying like we decided to use LML e', 'start': 9170.319, 'duration': 5.721}, {'text': 'structure', 'start': 9174.359, 'duration': 4.881}, {'text': 'uh what is it so for for people who are', 'start': 9176.04, 'duration': 5.0}, {'text': 'following along the slides this is the', 'start': 9179.24, 'duration': 4.079}, {'text': 'slide jck called day one MIT by can', 'start': 9181.04, 'duration': 4.92}, {'text': 'Knowledge Graph and you can find it on', 'start': 9183.319, 'duration': 4.401}, {'text': 'slide', 'start': 9185.96, 'duration': 6.2}, {'text': '32 thank you just in', 'start': 9187.72, 'duration': 9.96}, {'text': 'case so in in the current uh model we in', 'start': 9192.16, 'duration': 8.199}, {'text': 'the current repository we have model in', 'start': 9197.68, 'duration': 8.36}, {'text': 'the linkl F so um so again like', 'start': 9200.359, 'duration': 7.96}, {'text': 'everything we decided to to build on top', 'start': 9206.04, 'duration': 5.6}, {'text': 'of link and that actually gives us a', 'start': 9208.319, 'duration': 6.96}, {'text': 'possibility to later uh generate other', 'start': 9211.64, 'duration': 7.32}, {'text': 'formats that might be useful for uh for', 'start': 9215.279, 'duration': 6.08}, {'text': 'for other groups in in the future like', 'start': 9218.96, 'duration': 5.04}, {'text': 'for example we can generate a pantic', 'start': 9221.359, 'duration': 6.241}, {'text': 'model in python or like', 'start': 9224.0, 'duration': 7.52}, {'text': 'um uh Json schema and Etc different', 'start': 9227.6, 'duration': 6.64}, {'text': 'formats but what is like what I want to', 'start': 9231.52, 'duration': 7.04}, {'text': 'focus now is like that for um for most', 'start': 9234.24, 'duration': 9.119}, {'text': 'of us like probably the stama f is not', 'start': 9238.56, 'duration': 9.28}, {'text': 'as as usable as um accessible for people', 'start': 9243.359, 'duration': 7.401}, {'text': 'so also like we decided to use uh', 'start': 9247.84, 'duration': 5.8}, {'text': 'another like tools from link ecosystem', 'start': 9250.76, 'duration': 6.04}, {'text': 'spreadsheets and build some additional W', 'start': 9253.64, 'duration': 6.32}, {'text': 'around this to to create an option to to', 'start': 9256.8, 'duration': 7.04}, {'text': 'be able to build model that this Yama', 'start': 9259.96, 'duration': 7.08}, {'text': 'model from the uh from this Google', 'start': 9263.84, 'duration': 7.4}, {'text': 'spreadsheet so this is the', 'start': 9267.04, 'duration': 4.2}, {'text': 'um this is the spreadsheets that at some', 'start': 9271.96, 'duration': 6.68}, {'text': 'point um okay Lydia gave me sorry I', 'start': 9274.88, 'duration': 5.96}, {'text': 'cannot see', 'start': 9278.64, 'duration': 5.2}, {'text': 'a', 'start': 9280.84, 'duration': 3.0}, {'text': 'okay', 'start': 9284.399, 'duration': 3.0}, {'text': 'sorry and uh here like it has like the', 'start': 9287.6, 'duration': 5.24}, {'text': 'information that like many working group', 'start': 9290.92, 'duration': 4.92}, {'text': 'were collecting for Library generation', 'start': 9292.84, 'duration': 7.8}, {'text': 'which metadata are are uh are needed and', 'start': 9295.84, 'duration': 7.84}, {'text': 'uh you can see that like we have like', 'start': 9300.64, 'duration': 6.24}, {'text': 'various stops that uh collect various', 'start': 9303.68, 'duration': 5.84}, {'text': 'types of information some of them are', 'start': 9306.88, 'duration': 5.64}, {'text': 'like um about uh SLS that are probably', 'start': 9309.52, 'duration': 5.68}, {'text': 'like the most the most um useful for', 'start': 9312.52, 'duration': 5.879}, {'text': 'scientists that basically have like um', 'start': 9315.2, 'duration': 5.56}, {'text': 'specific fields that uh scientists are', 'start': 9318.399, 'duration': 5.361}, {'text': 'using we have also like classes that in', 'start': 9320.76, 'duration': 6.599}, {'text': 'terms of in Cas in order to build like', 'start': 9323.76, 'duration': 6.16}, {'text': 'uh proper model we also have to gr group', 'start': 9327.359, 'duration': 5.92}, {'text': 'some of these um attributes into classes', 'start': 9329.92, 'duration': 7.32}, {'text': 'we have um we have also like value sets', 'start': 9333.279, 'duration': 6.521}, {'text': 'that you can have you can like have a', 'start': 9337.24, 'duration': 6.88}, {'text': 'list of all the um all the available', 'start': 9339.8, 'duration': 10.36}, {'text': 'values for for the variables that are um', 'start': 9344.12, 'duration': 8.359}, {'text': 'that are spe specific value', 'start': 9350.16, 'duration': 5.88}, {'text': 'sets and um so you can you can look at', 'start': 9352.479, 'duration': 5.321}, {'text': 'this and you know this is like pretty', 'start': 9356.04, 'duration': 5.84}, {'text': 'complex model so it has U multiple', 'start': 9357.8, 'duration': 6.08}, {'text': 'classes it also has multiple relation', 'start': 9361.88, 'duration': 4.16}, {'text': \"because we also like um I don't know if\", 'start': 9363.88, 'duration': 5.24}, {'text': 'you had a a slide on this but we also', 'start': 9366.04, 'duration': 5.96}, {'text': 'want to um Pro like include in our model', 'start': 9369.12, 'duration': 5.159}, {'text': 'the idea of provenance so we know you', 'start': 9372.0, 'duration': 5.12}, {'text': 'can track every single um every single', 'start': 9374.279, 'duration': 6.04}, {'text': 'sample from to the donor so we we are', 'start': 9377.12, 'duration': 5.56}, {'text': 'also using the provance class to to', 'start': 9380.319, 'duration': 5.12}, {'text': \"create relation and that's everything we\", 'start': 9382.68, 'duration': 6.2}, {'text': 'were able to basically include in this', 'start': 9385.439, 'duration': 7.481}, {'text': 'um in this uh Google scsh and translate', 'start': 9388.88, 'duration': 5.72}, {'text': 'to the to the', 'start': 9392.92, 'duration': 3.96}, {'text': 'Yami so', 'start': 9394.6, 'duration': 5.16}, {'text': 'um going back to', 'start': 9396.88, 'duration': 5.12}, {'text': 'the uh', 'start': 9399.76, 'duration': 5.16}, {'text': 'presentation so the second repository we', 'start': 9402.0, 'duration': 4.68}, {'text': 'have is', 'start': 9404.92, 'duration': 6.04}, {'text': 'the uh bkb so this is the place where we', 'start': 9406.68, 'duration': 7.32}, {'text': \"it's a python Library so where we store\", 'start': 9410.96, 'duration': 6.08}, {'text': 'the P python version of the model so the', 'start': 9414.0, 'duration': 5.12}, {'text': 'models uh are', 'start': 9417.04, 'duration': 5.04}, {'text': 'here in the model section and you see', 'start': 9419.12, 'duration': 5.199}, {'text': 'like again like they like the three main', 'start': 9422.08, 'duration': 5.44}, {'text': 'models that we we support but also like', 'start': 9424.319, 'duration': 7.521}, {'text': 'we have like several tools to um to to', 'start': 9427.52, 'duration': 7.12}, {'text': 'interact with the model and interact', 'start': 9431.84, 'duration': 4.04}, {'text': 'with a DAT', 'start': 9434.64, 'duration': 5.92}, {'text': 'and like uh get the data to the uh', 'start': 9435.88, 'duration': 7.559}, {'text': 'that I describ by this model so this is', 'start': 9440.56, 'duration': 5.839}, {'text': 'like still like um under development so', 'start': 9443.439, 'duration': 6.321}, {'text': 'like we we welcome any contribution and', 'start': 9446.399, 'duration': 5.761}, {'text': \"uh and feedback but today we'll be\", 'start': 9449.76, 'duration': 3.96}, {'text': 'playing mostly', 'start': 9452.16, 'duration': 4.84}, {'text': 'with converter from the spreadsheet so', 'start': 9453.72, 'duration': 7.32}, {'text': 'this is the tool that um it was built', 'start': 9457.0, 'duration': 6.8}, {'text': 'and is used like link schema sheets to', 'start': 9461.04, 'duration': 7.0}, {'text': 'extract data from the from the um source', 'start': 9463.8, 'duration': 6.519}, {'text': 'that we believe is like', 'start': 9468.04, 'duration': 5.52}, {'text': 'uh the easiest way to uh like collect', 'start': 9470.319, 'duration': 6.201}, {'text': 'data from scientists to the Y F that', 'start': 9473.56, 'duration': 7.0}, {'text': \"it's uh underst by by ML and other and\", 'start': 9476.52, 'duration': 4.799}, {'text': 'other', 'start': 9480.56, 'duration': 3.719}, {'text': \"tools so this is what we uh we're\", 'start': 9481.319, 'duration': 5.561}, {'text': 'thinking we', 'start': 9484.279, 'duration': 2.601}, {'text': 'can so', 'start': 9487.08, 'duration': 5.68}, {'text': 'um okay so this is like the example that', 'start': 9489.84, 'duration': 6.2}, {'text': 'uh I already showed you', 'start': 9492.76, 'duration': 5.4}, {'text': 'um', 'start': 9496.04, 'duration': 4.6}, {'text': 'it um', 'start': 9498.16, 'duration': 6.119}, {'text': 'but now I was thinking that um we we can', 'start': 9500.64, 'duration': 6.839}, {'text': 'try to show you how we can uh we can', 'start': 9504.279, 'duration': 5.12}, {'text': 'build like new model and how we can', 'start': 9507.479, 'duration': 4.761}, {'text': 'collect data in the future and how you', 'start': 9509.399, 'duration': 6.08}, {'text': 'you can give us information and S like', 'start': 9512.24, 'duration': 5.48}, {'text': 'for like the new models that we be like', 'start': 9515.479, 'duration': 4.84}, {'text': 'including in the in', 'start': 9517.72, 'duration': 8.559}, {'text': 'repository so I created like example of', 'start': 9520.319, 'duration': 9.681}, {'text': \"oh that's not this\", 'start': 9526.279, 'duration': 3.721}, {'text': \"I've created a\", 'start': 9531.04, 'duration': 3.72}, {'text': 'new um', 'start': 9532.8, 'duration': 5.76}, {'text': 'spreadsheet that um I started from', 'start': 9534.76, 'duration': 5.639}, {'text': 'describing the donor', 'start': 9538.56, 'duration': 4.44}, {'text': 'class and I was thinking like just to', 'start': 9540.399, 'duration': 5.08}, {'text': 'show you on this like simple example how', 'start': 9543.0, 'duration': 6.6}, {'text': 'the how the uh converter works and play', 'start': 9545.479, 'duration': 6.081}, {'text': 'with you that like ask you to like', 'start': 9549.6, 'duration': 4.28}, {'text': 'contribute and give additional', 'start': 9551.56, 'duration': 4.56}, {'text': 'information and show how this actually', 'start': 9553.88, 'duration': 4.72}, {'text': 'is translated to the model so here like', 'start': 9556.12, 'duration': 5.44}, {'text': 'you have like several like tabs in the', 'start': 9558.6, 'duration': 5.56}, {'text': 'first one you you are describing', 'start': 9561.56, 'duration': 6.36}, {'text': 'classes um I try to put like the the', 'start': 9564.16, 'duration': 6.8}, {'text': 'gray area is more like for places that', 'start': 9567.92, 'duration': 5.559}, {'text': 'scientist not necessarily have to um', 'start': 9570.96, 'duration': 4.319}, {'text': 'have to have to know what to do with', 'start': 9573.479, 'duration': 4.081}, {'text': 'this this is like part also like more on', 'start': 9575.279, 'duration': 5.281}, {'text': 'the on the our team that we can we can', 'start': 9577.56, 'duration': 5.839}, {'text': 'um um provide some additional', 'start': 9580.56, 'duration': 4.64}, {'text': 'information about different relation', 'start': 9583.399, 'duration': 4.521}, {'text': 'between classes but the most important', 'start': 9585.2, 'duration': 4.68}, {'text': 'is like the the class', 'start': 9587.92, 'duration': 4.28}, {'text': 'some kind of subset subset are more like', 'start': 9589.88, 'duration': 5.04}, {'text': 'used uh if um if there are some', 'start': 9592.2, 'duration': 5.159}, {'text': 'information about like what kind of a', 'start': 9594.92, 'duration': 4.32}, {'text': 'group might need this class in the', 'start': 9597.359, 'duration': 4.601}, {'text': 'future uh this is like most of the', 'start': 9599.24, 'duration': 5.76}, {'text': 'columns are not are not uh', 'start': 9601.96, 'duration': 6.96}, {'text': 'required but um for now you can always', 'start': 9605.0, 'duration': 6.439}, {'text': \"put in Subs Bon but again it's not\", 'start': 9608.92, 'duration': 4.6}, {'text': 'required the mo the most important', 'start': 9611.439, 'duration': 4.401}, {'text': 'things that we always need feedback from', 'start': 9613.52, 'duration': 4.36}, {'text': 'saying this is of course', 'start': 9615.84, 'duration': 4.84}, {'text': 'description and here here you have like', 'start': 9617.88, 'duration': 5.64}, {'text': 'um I mean this is like for specific for', 'start': 9620.68, 'duration': 5.28}, {'text': \"n because that's I copy from the from\", 'start': 9623.52, 'duration': 5.04}, {'text': 'the library generation but here we also', 'start': 9625.96, 'duration': 6.0}, {'text': 'like also want to provide the mapping to', 'start': 9628.56, 'duration': 6.839}, {'text': 'the to the information from uh from new', 'start': 9631.96, 'duration': 6.319}, {'text': 'category that we are we we we are able', 'start': 9635.399, 'duration': 5.201}, {'text': 'to connect this uh two piece two pieces', 'start': 9638.279, 'duration': 4.521}, {'text': 'of', 'start': 9640.6, 'duration': 2.2}, {'text': 'informations the second tab is uh', 'start': 9643.8, 'duration': 6.0}, {'text': 'describing sloth so here', 'start': 9646.96, 'duration': 5.8}, {'text': 'like again like the gray area I put', 'start': 9649.8, 'duration': 4.44}, {'text': \"something that you know it's not\", 'start': 9652.76, 'duration': 5.8}, {'text': 'necessary up to like uh we can our group', 'start': 9654.24, 'duration': 6.72}, {'text': 'group can like um rename some of the', 'start': 9658.56, 'duration': 6.6}, {'text': 'things but we always provide the um Bon', 'start': 9660.96, 'duration': 6.72}, {'text': 'field purpose B and field so the kind of', 'start': 9665.16, 'duration': 7.08}, {'text': 'like naming term that uh B can agree on', 'start': 9667.68, 'duration': 7.4}, {'text': 'again like this is um here we are saying', 'start': 9672.24, 'duration': 5.84}, {'text': 'that this specific field in terms of', 'start': 9675.08, 'duration': 5.92}, {'text': 'modeling um uh relates to the class that', 'start': 9678.08, 'duration': 5.44}, {'text': \"we call donor so it's kind of like just\", 'start': 9681.0, 'duration': 5.0}, {'text': 'as a subset of information that belongs', 'start': 9683.52, 'duration': 5.32}, {'text': 'to this um the subg', 'start': 9686.0, 'duration': 6.08}, {'text': 'group um and again like the very', 'start': 9688.84, 'duration': 5.599}, {'text': 'important is the description and also', 'start': 9692.08, 'duration': 4.64}, {'text': 'like okay so here I forgot so this is', 'start': 9694.439, 'duration': 4.121}, {'text': 'also like very important we always want', 'start': 9696.72, 'duration': 5.28}, {'text': 'to have thean U ID that is um that is', 'start': 9698.56, 'duration': 6.4}, {'text': 'generated by the metad in ontology Group', 'start': 9702.0, 'duration': 6.319}, {'text': 'by Patrick so even if we change the name', 'start': 9704.96, 'duration': 5.56}, {'text': 'at the end we always have access we', 'start': 9708.319, 'duration': 5.241}, {'text': 'always have the same the same um bike', 'start': 9710.52, 'duration': 6.16}, {'text': 'and U ID so again this is kind kind of', 'start': 9713.56, 'duration': 6.16}, {'text': 'can be can be empty for now but like I', 'start': 9716.68, 'duration': 4.48}, {'text': 'just wanted to show you that this is', 'start': 9719.72, 'duration': 3.16}, {'text': 'like important information that we', 'start': 9721.16, 'duration': 4.04}, {'text': 'always have to collect and here like you', 'start': 9722.88, 'duration': 4.32}, {'text': 'have like some standard additional', 'start': 9725.2, 'duration': 5.079}, {'text': \"information like data format if it's\", 'start': 9727.2, 'duration': 4.88}, {'text': \"nothing it's string but you can have\", 'start': 9730.279, 'duration': 5.08}, {'text': 'like a specific format uh like floats', 'start': 9732.08, 'duration': 6.0}, {'text': 'but also like you have this um this', 'start': 9735.359, 'duration': 4.321}, {'text': 'specific um', 'start': 9738.08, 'duration': 3.84}, {'text': 'the value set yeah so for example here', 'start': 9739.68, 'duration': 5.639}, {'text': 'is uh H at the death unit and you can', 'start': 9741.92, 'duration': 6.72}, {'text': 'see in value set you also have the AG', 'start': 9745.319, 'duration': 5.801}, {'text': \"the unit so you can that's how you are\", 'start': 9748.64, 'duration': 5.2}, {'text': 'saying that this specific field should', 'start': 9751.12, 'duration': 8.159}, {'text': 'uh uh only has like specific specific', 'start': 9753.84, 'duration': 8.84}, {'text': 'values and again here like this is like', 'start': 9759.279, 'duration': 6.441}, {'text': 'specifically uh we were we were getting', 'start': 9762.68, 'duration': 6.16}, {'text': 'data from uh from n so this is like', 'start': 9765.72, 'duration': 6.48}, {'text': 'again we want to keep in the model the U', 'start': 9768.84, 'duration': 7.08}, {'text': 'andash from n and the variable name that', 'start': 9772.2, 'duration': 5.76}, {'text': 'sometimes in most cases it would be the', 'start': 9775.92, 'duration': 4.399}, {'text': \"same but it doesn't have to be because\", 'start': 9777.96, 'duration': 5.76}, {'text': 'we always know how how to map', 'start': 9780.319, 'duration': 8.12}, {'text': 'this um so this is like', 'start': 9783.72, 'duration': 7.759}, {'text': 'um and here like one additional like', 'start': 9788.439, 'duration': 5.601}, {'text': 'this is like kind of just general like', 'start': 9791.479, 'duration': 4.361}, {'text': \"you you don't necessarily have to have\", 'start': 9794.04, 'duration': 4.68}, {'text': 'to touch this this is basically place to', 'start': 9795.84, 'duration': 5.04}, {'text': 'provide all the prefixes all the like', 'start': 9798.72, 'duration': 5.88}, {'text': 'metadata for the for the model itself so', 'start': 9800.88, 'duration': 5.32}, {'text': 'I just want to show you quickly that', 'start': 9804.6, 'duration': 4.6}, {'text': 'like based on this um on this like', 'start': 9806.2, 'duration': 7.0}, {'text': 'simple um focus uh', 'start': 9809.2, 'duration': 9.199}, {'text': 'spreadsheet we um are we on', 'start': 9813.2, 'duration': 8.0}, {'text': 'the I have installed this uh python', 'start': 9818.399, 'duration': 5.761}, {'text': 'library is it is it big enough or should', 'start': 9821.2, 'duration': 7.159}, {'text': 'we be but okay so here we are using this', 'start': 9824.16, 'duration': 7.68}, {'text': 'um this big bit um package python', 'start': 9828.359, 'duration': 5.96}, {'text': 'library that I show you and a schema to', 'start': 9831.84, 'duration': 6.68}, {'text': 'model um a command and basically we are', 'start': 9834.319, 'duration': 7.281}, {'text': 'specifying the output that we be model', 'start': 9838.52, 'duration': 5.4}, {'text': 'yamama the place that we be like', 'start': 9841.6, 'duration': 4.24}, {'text': 'downloading all the uh all the', 'start': 9843.92, 'duration': 4.04}, {'text': 'spreadsheets from the from the Google', 'start': 9845.84, 'duration': 3.76}, {'text': 'from the Google', 'start': 9847.96, 'duration': 4.439}, {'text': 'spreadsheet and some metadata', 'start': 9849.6, 'duration': 4.44}, {'text': 'information from', 'start': 9852.399, 'duration': 4.441}, {'text': \"the uh I will show you the that there's\", 'start': 9854.04, 'duration': 5.08}, {'text': 'the information about the specific uh', 'start': 9856.84, 'duration': 5.92}, {'text': 'Google spreadsheet ID and the and the', 'start': 9859.12, 'duration': 8.4}, {'text': 'tabs ID so once I on this sorry there', 'start': 9862.76, 'duration': 7.599}, {'text': 'some warning but um you can see that I', 'start': 9867.52, 'duration': 4.32}, {'text': 'created the', 'start': 9870.359, 'duration': 4.481}, {'text': 'model', 'start': 9871.84, 'duration': 3.0}, {'text': 'um and this is the the link ml model so', 'start': 9875.279, 'duration': 5.481}, {'text': 'basically here as I show you this is', 'start': 9878.6, 'duration': 4.2}, {'text': 'kind of like maybe more boring like', 'start': 9880.76, 'duration': 4.24}, {'text': 'prefix information like important for', 'start': 9882.8, 'duration': 5.12}, {'text': 'modeling but here you have like subset', 'start': 9885.0, 'duration': 5.52}, {'text': 'anal that all the all the value sets', 'start': 9887.92, 'duration': 3.8}, {'text': 'that are', 'start': 9890.52, 'duration': 3.64}, {'text': 'included and here you have classes so', 'start': 9891.72, 'duration': 4.639}, {'text': 'again that was only for the one class', 'start': 9894.16, 'duration': 4.4}, {'text': 'but you see that is donor and here you', 'start': 9896.359, 'duration': 5.04}, {'text': 'should see all the attributes that were', 'start': 9898.56, 'duration': 6.48}, {'text': 'in one of the stops yeah so bi sex H', 'start': 9901.399, 'duration': 5.92}, {'text': 'death and you see also like we are try', 'start': 9905.04, 'duration': 5.56}, {'text': 'we are mapping to like different um', 'start': 9907.319, 'duration': 5.601}, {'text': 'different ontology so to keep track of', 'start': 9910.6, 'duration': 5.64}, {'text': 'this so this is uh again this is example', 'start': 9912.92, 'duration': 5.479}, {'text': 'this is one class with couple uh with', 'start': 9916.24, 'duration': 3.4}, {'text': 'couple', 'start': 9918.399, 'duration': 4.92}, {'text': 'attributes and um maybe like quickly', 'start': 9919.64, 'duration': 6.24}, {'text': 'just want to show that uh for this we we', 'start': 9923.319, 'duration': 4.881}, {'text': 'build slide like AER around link ml', 'start': 9925.88, 'duration': 3.76}, {'text': 'tools but', 'start': 9928.2, 'duration': 4.279}, {'text': 'for but for to in order to create for', 'start': 9929.64, 'duration': 5.24}, {'text': 'example like python representation that', 'start': 9932.479, 'duration': 7.0}, {'text': \"we need uh in in the B Library it's\", 'start': 9934.88, 'duration': 7.68}, {'text': 'actually we are just using the um other', 'start': 9939.479, 'duration': 7.441}, {'text': \"box like thinkl tool that it's\", 'start': 9942.56, 'duration': 7.64}, {'text': \"um it's creates that pantic version of\", 'start': 9946.92, 'duration': 6.399}, {'text': 'the model that later we or like anyone', 'start': 9950.2, 'duration': 7.119}, {'text': 'else can use it in the in the um in any', 'start': 9953.319, 'duration': 7.761}, {'text': 'python package to extract the data and', 'start': 9957.319, 'duration': 6.281}, {'text': 'validate so', 'start': 9961.08, 'duration': 6.199}, {'text': 'um yeah so I was thinking that um as', 'start': 9963.6, 'duration': 7.16}, {'text': 'part of like hands on if uh people want', 'start': 9967.279, 'duration': 6.761}, {'text': 'to um log into this and I I saw some', 'start': 9970.76, 'duration': 5.84}, {'text': 'people already are here but like just', 'start': 9974.04, 'duration': 6.92}, {'text': 'having some um idea about like different', 'start': 9976.6, 'duration': 6.839}, {'text': 'slots different fields that you think', 'start': 9980.96, 'duration': 4.56}, {'text': 'that would be relevant different pieces', 'start': 9983.439, 'duration': 2.92}, {'text': 'of', 'start': 9985.52, 'duration': 5.28}, {'text': 'metadata pieces of information that are', 'start': 9986.359, 'duration': 7.201}, {'text': 'relevant um and should be connected to', 'start': 9990.8, 'duration': 4.44}, {'text': 'the donor', 'start': 9993.56, 'duration': 5.759}, {'text': 'class and um and also like Lydia', 'start': 9995.24, 'duration': 6.84}, {'text': 'actually gave me yesterday that a', 'start': 9999.319, 'duration': 7.801}, {'text': 'example of metadata for Mouse owner', 'start': 10002.08, 'duration': 5.04}, {'text': 'so here like you know like we often get', 'start': 10014.84, 'duration': 5.88}, {'text': 'um data not exactly in the format that', 'start': 10018.359, 'duration': 5.321}, {'text': 'we can automatic automatically extract', 'start': 10020.72, 'duration': 6.48}, {'text': 'so we have to map this metadata to uh to', 'start': 10023.68, 'duration': 5.48}, {'text': 'the link', 'start': 10027.2, 'duration': 5.199}, {'text': 'ml recognizable like spreadsheet yeah', 'start': 10029.16, 'duration': 4.64}, {'text': 'but', 'start': 10032.399, 'duration': 5.441}, {'text': 'um but if uh people want to practice and', 'start': 10033.8, 'duration': 6.32}, {'text': 'transporting couple slots and you know', 'start': 10037.84, 'duration': 5.12}, {'text': 'like this will not be uh officially', 'start': 10040.12, 'duration': 4.88}, {'text': 'moved right the way to the B model of', 'start': 10042.96, 'duration': 4.68}, {'text': 'course like a normally like we have', 'start': 10045.0, 'duration': 4.72}, {'text': 'Patrick and his group that would be VI', 'start': 10047.64, 'duration': 4.48}, {'text': 'viewing some of the uh some of this', 'start': 10049.72, 'duration': 4.8}, {'text': 'metadata and other like subgroups so', 'start': 10052.12, 'duration': 4.6}, {'text': 'this is like just exercise of like how', 'start': 10054.52, 'duration': 5.32}, {'text': 'we can add additional slots to to the', 'start': 10056.72, 'duration': 5.679}, {'text': 'model so maybe like some people can add', 'start': 10059.84, 'duration': 5.24}, {'text': 'additional slots to donors and some', 'start': 10062.399, 'duration': 5.801}, {'text': 'people can add additional class to the', 'start': 10065.08, 'duration': 6.84}, {'text': 'to the mouse yeah so and I I just want', 'start': 10068.2, 'duration': 5.68}, {'text': 'to like you know like it would be nice', 'start': 10071.92, 'duration': 4.359}, {'text': 'if at Le couple people can try to', 'start': 10073.88, 'duration': 5.399}, {'text': 'interact and see if that makes sense if', 'start': 10076.279, 'duration': 7.441}, {'text': 'this kind of um like um workflow of', 'start': 10079.279, 'duration': 8.881}, {'text': 'adding new metadata might be might be', 'start': 10083.72, 'duration': 4.44}, {'text': 'useful sorry Jing little Link new link', 'start': 10089.56, 'duration': 7.08}, {'text': 'for', 'start': 10094.439, 'duration': 2.201}, {'text': \"the sorry I didn't he next link the\", 'start': 10096.92, 'duration': 5.6}, {'text': 'metadata for Mouse donor oh', 'start': 10099.439, 'duration': 7.161}, {'text': 'okay yeah I think something to look at', 'start': 10102.52, 'duration': 7.879}, {'text': 'in I it was in the on the slides yeah it', 'start': 10106.6, 'duration': 6.16}, {'text': \"doesn't seem to work for me yeah I I\", 'start': 10110.399, 'duration': 4.841}, {'text': 'thought that I added like different here', 'start': 10112.76, 'duration': 6.4}, {'text': 'I think I added wrong WR yeah just the', 'start': 10115.24, 'duration': 9.92}, {'text': 'during the yeah I think uh it should', 'start': 10119.16, 'duration': 6.0}, {'text': 'be I was planning to', 'start': 10126.92, 'duration': 3.8}, {'text': 'no yeah I was not playing to keep from', 'start': 10138.6, 'duration': 7.12}, {'text': 'teams I I created a new', 'start': 10141.399, 'duration': 4.321}, {'text': 'one so this should work because this is', 'start': 10146.72, 'duration': 4.92}, {'text': 'like just Google spread not from not', 'start': 10149.359, 'duration': 7.241}, {'text': 'from the uh not from teams', 'start': 10151.64, 'duration': 4.96}, {'text': 'thank you start to interrupt your flow', 'start': 10169.16, 'duration': 2.319}, {'text': 'if you want to walk us through what', 'start': 10170.439, 'duration': 3.721}, {'text': \"we're doing again sorry what are we\", 'start': 10171.479, 'duration': 6.88}, {'text': 'doing again so I I was asking if some', 'start': 10174.16, 'duration': 6.199}, {'text': 'people can like add additional', 'start': 10178.359, 'duration': 5.681}, {'text': 'information to the Google', 'start': 10180.359, 'duration': 7.361}, {'text': 'spreadsheet okay so I tried add a row on', 'start': 10184.04, 'duration': 5.239}, {'text': 'the donor which', 'start': 10187.72, 'duration': 5.519}, {'text': 'disease disease or disease status and', 'start': 10189.279, 'duration': 6.561}, {'text': \"then you know so what I'm a little\", 'start': 10193.239, 'duration': 4.08}, {'text': 'confused about is how we kind of', 'start': 10195.84, 'duration': 4.0}, {'text': 'restrict the values to something', 'start': 10197.319, 'duration': 4.721}, {'text': 'controlled as opposed to you know I', 'start': 10199.84, 'duration': 5.12}, {'text': 'could just write informal free text', 'start': 10202.04, 'duration': 5.319}, {'text': 'about the disease', 'start': 10204.96, 'duration': 4.0}, {'text': 'here', 'start': 10207.359, 'duration': 4.801}, {'text': 'so so is it possible to specify that it', 'start': 10208.96, 'duration': 6.2}, {'text': 'was', 'start': 10212.16, 'duration': 3.0}, {'text': 'ontology so so just for you you mean now', 'start': 10215.279, 'duration': 6.481}, {'text': 'like for data type yeah yes yeah the', 'start': 10218.52, 'duration': 6.4}, {'text': \"data type so if it's nothing it's string\", 'start': 10221.76, 'duration': 6.679}, {'text': 'oh again', 'start': 10224.92, 'duration': 3.519}, {'text': 'happening Sor', 'start': 10231.319, 'duration': 3.481}, {'text': \"weting okay so here like if it's nothing\", 'start': 10235.479, 'duration': 5.201}, {'text': \"it's like by default it's string but you\", 'start': 10238.399, 'duration': 5.08}, {'text': 'are saying that we should um apply some', 'start': 10240.68, 'duration': 7.28}, {'text': 'some patterns or some speci is it just', 'start': 10243.479, 'duration': 6.88}, {'text': 'possible to give like a so is the data', 'start': 10247.96, 'duration': 6.479}, {'text': 'type so I can see a data type here', 'start': 10250.359, 'duration': 7.641}, {'text': 'sets Okay so on the Don so in that case', 'start': 10254.439, 'duration': 5.281}, {'text': \"that presumbly that's a value is that a\", 'start': 10258.0, 'duration': 4.2}, {'text': \"value yeah so if you go to um I'm sorry\", 'start': 10259.72, 'duration': 4.519}, {'text': 'like I know it went back pretty quickly', 'start': 10262.2, 'duration': 6.0}, {'text': \"so that's um so here like if this is um\", 'start': 10264.239, 'duration': 7.681}, {'text': 'it can be like uh sorry it can be any', 'start': 10268.2, 'duration': 6.84}, {'text': 'any standard type but also can be like', 'start': 10271.92, 'duration': 5.2}, {'text': 'the the value set specifically that you', 'start': 10275.04, 'duration': 5.199}, {'text': 'defined and this value sets if this is', 'start': 10277.12, 'duration': 4.56}, {'text': 'something that you are not taking from', 'start': 10280.239, 'duration': 4.721}, {'text': 'any ontology and we we we have to like', 'start': 10281.68, 'duration': 6.44}, {'text': 'uh use like support the option of taking', 'start': 10284.96, 'duration': 6.88}, {'text': 'for specific uh onology but for now this', 'start': 10288.12, 'duration': 6.319}, {'text': 'is basically taking from the value sets', 'start': 10291.84, 'duration': 3.88}, {'text': 'that are', 'start': 10294.439, 'duration': 4.401}, {'text': 'predefined by by so it would be just a', 'start': 10295.72, 'duration': 6.84}, {'text': 'small predefined value set for now fure', 'start': 10298.84, 'duration': 6.2}, {'text': 'so if I wanted to say take from any of', 'start': 10302.56, 'duration': 6.44}, {'text': 'the 30,000 terms in one disase ontology', 'start': 10305.04, 'duration': 6.279}, {'text': 'I mean this is very like valid point', 'start': 10309.0, 'duration': 5.399}, {'text': \"yeah so uh we don't have now but that's\", 'start': 10311.319, 'duration': 4.641}, {'text': 'something that we discuss also with', 'start': 10314.399, 'duration': 4.601}, {'text': 'linkl Community how to also like Support', 'start': 10315.96, 'duration': 7.76}, {'text': 'also the evolution of the of the U we', 'start': 10319.0, 'duration': 6.88}, {'text': \"could because we've got simar kind of\", 'start': 10323.72, 'duration': 4.08}, {'text': \"issues and we've got some potential\", 'start': 10325.88, 'duration': 3.8}, {'text': \"Solutions yeah right now there's this\", 'start': 10327.8, 'duration': 5.16}, {'text': 'expansion solution in link which allows', 'start': 10329.68, 'duration': 6.32}, {'text': 'you to to anology but you end up these', 'start': 10332.96, 'duration': 6.16}, {'text': \"big value sets we're interested build\", 'start': 10336.0, 'duration': 6.88}, {'text': 'Dam to sell so yeah so linkl supports', 'start': 10339.12, 'duration': 7.0}, {'text': \"Dynamic enums U which we can use it's\", 'start': 10342.88, 'duration': 4.88}, {'text': 'not supported in the Google Sheets thing', 'start': 10346.12, 'duration': 3.8}, {'text': 'but if somebody comes and says yeah you', 'start': 10347.76, 'duration': 5.0}, {'text': 'know sex should be dynamically pulled', 'start': 10349.92, 'duration': 5.479}, {'text': 'from this node of an onology that can be', 'start': 10352.76, 'duration': 4.92}, {'text': \"supported that's I think in the road map\", 'start': 10355.399, 'duration': 4.08}, {'text': 'of adding to the Google Sheets to make', 'start': 10357.68, 'duration': 4.12}, {'text': 'that work the second component is the', 'start': 10359.479, 'duration': 3.76}, {'text': 'more challenging one which is what you', 'start': 10361.8, 'duration': 3.96}, {'text': 'said for diseases if I want all icd1', 'start': 10363.239, 'duration': 5.921}, {'text': \"codes for diseases that's a very list\", 'start': 10365.76, 'duration': 6.679}, {'text': 'and when you create a link ml file it', 'start': 10369.16, 'duration': 5.52}, {'text': 'kind of expands out to a full set of', 'start': 10372.439, 'duration': 4.441}, {'text': \"things yeah yeah so actually we're in\", 'start': 10374.68, 'duration': 5.44}, {'text': 'build Dynamic tools for that so yeah', 'start': 10376.88, 'duration': 5.24}, {'text': 'yeah and I believe also like the link', 'start': 10380.12, 'duration': 3.84}, {'text': 'Community itself was very interested in', 'start': 10382.12, 'duration': 3.279}, {'text': \"this I don't remember exactly all the\", 'start': 10383.96, 'duration': 3.92}, {'text': 'points from the discussion but and and', 'start': 10385.399, 'duration': 4.92}, {'text': 'Tim and pel and I we have talked in our', 'start': 10387.88, 'duration': 3.72}, {'text': 'kind of working groups of how to', 'start': 10390.319, 'duration': 4.12}, {'text': 'separate out that just that bit of it so', 'start': 10391.6, 'duration': 4.2}, {'text': 'that you can stay in a separate data', 'start': 10394.439, 'duration': 3.281}, {'text': \"file yeah yeah so right now we're doing\", 'start': 10395.8, 'duration': 4.04}, {'text': 'the expansion', 'start': 10397.72, 'duration': 4.92}, {'text': 'with lied', 'start': 10399.84, 'duration': 5.639}, {'text': 'small so for now for exercise you could', 'start': 10402.64, 'duration': 6.12}, {'text': 'add a few Rose to this to add a few', 'start': 10405.479, 'duration': 6.92}, {'text': 'diseases to that and but yeah for now we', 'start': 10408.76, 'duration': 6.32}, {'text': 'were using like adding all the all the', 'start': 10412.399, 'duration': 6.281}, {'text': 'um all all the values to the to the', 'start': 10415.08, 'duration': 6.159}, {'text': \"yamama F so it's yeah it's not\", 'start': 10418.68, 'duration': 5.0}, {'text': 'necessarily the best solution for big', 'start': 10421.239, 'duration': 5.16}, {'text': 'yeah can I just bring up since he added', 'start': 10423.68, 'duration': 4.48}, {'text': \"since David added disease I'm going to\", 'start': 10426.399, 'duration': 5.321}, {'text': 'bring up the complications of modeling', 'start': 10428.16, 'duration': 6.68}, {'text': 'uh disease is one of those things where', 'start': 10431.72, 'duration': 4.8}, {'text': 'you might want to know when somebody was', 'start': 10434.84, 'duration': 4.24}, {'text': 'diagnosed with a particular disease not', 'start': 10436.52, 'duration': 5.839}, {'text': 'just that the person had that disease uh', 'start': 10439.08, 'duration': 5.159}, {'text': 'because across the space of diseases and', 'start': 10442.359, 'duration': 3.88}, {'text': 'this is where modeling gets complex', 'start': 10444.239, 'duration': 3.721}, {'text': 'because now you want some temporal', 'start': 10446.239, 'duration': 4.441}, {'text': 'information of the individual over time', 'start': 10447.96, 'duration': 5.96}, {'text': 'as opposed to a static', 'start': 10450.68, 'duration': 3.24}, {'text': 'snapshot then you might have to say', 'start': 10454.04, 'duration': 5.0}, {'text': 'disease at the time of death and', 'start': 10456.04, 'duration': 5.84}, {'text': 'snap it to that particular time as an', 'start': 10459.04, 'duration': 5.56}, {'text': 'example uh so this is where the modeling', 'start': 10461.88, 'duration': 5.16}, {'text': 'exercise becomes more intellectually', 'start': 10464.6, 'duration': 4.839}, {'text': 'interesting but also where Engineers run', 'start': 10467.04, 'duration': 6.52}, {'text': 'away from us uh because they want a view', 'start': 10469.439, 'duration': 6.96}, {'text': 'that they can play with and not a field', 'start': 10473.56, 'duration': 5.52}, {'text': 'that grows as a graph yes can you have', 'start': 10476.399, 'duration': 5.0}, {'text': 'micophone', 'start': 10479.08, 'duration': 2.319}, {'text': 'this is only because David brought up', 'start': 10482.479, 'duration': 7.84}, {'text': 'disease yeah I problem', 'start': 10485.52, 'duration': 4.799}, {'text': 'um and also maybe disease would be', 'start': 10490.68, 'duration': 5.759}, {'text': 'multiple col so you might have you know', 'start': 10493.2, 'duration': 5.239}, {'text': 'the actual disease so they have a tumor', 'start': 10496.439, 'duration': 5.201}, {'text': 'do they have epilepsy we human samples', 'start': 10498.439, 'duration': 5.361}, {'text': 'um but then', 'start': 10501.64, 'duration': 4.88}, {'text': 'was seizures so some of the T patients', 'start': 10503.8, 'duration': 6.84}, {'text': 'have seizures so it maybe it could even', 'start': 10506.52, 'duration': 6.28}, {'text': 'be', 'start': 10510.64, 'duration': 2.16}, {'text': 'broken yeah this is', 'start': 10513.92, 'duration': 5.559}, {'text': 'actually so this is actually like one of', 'start': 10517.04, 'duration': 4.399}, {'text': \"the things here like it's multivalued\", 'start': 10519.479, 'duration': 3.601}, {'text': 'and it is exactly what you were saying', 'start': 10521.439, 'duration': 3.601}, {'text': 'that like you know this is can be like', 'start': 10523.08, 'duration': 4.319}, {'text': 'for one donor can be like multiple', 'start': 10525.04, 'duration': 5.92}, {'text': 'diseases yeah and that that apart from', 'start': 10527.399, 'duration': 5.321}, {'text': 'like what disease did they have did it', 'start': 10530.96, 'duration': 3.479}, {'text': 'come with seizures might be a separate', 'start': 10532.72, 'duration': 4.24}, {'text': 'feature yes so I I think like what you', 'start': 10534.439, 'duration': 4.92}, {'text': 'were saying that like the disease itself', 'start': 10536.96, 'duration': 5.0}, {'text': 'should have additional kind of', 'start': 10539.359, 'duration': 5.281}, {'text': 'information that belongs to thisas and', 'start': 10541.96, 'duration': 3.92}, {'text': 'yeah', 'start': 10544.64, 'duration': 5.599}, {'text': 'absolutely say that for human donors the', 'start': 10545.88, 'duration': 7.519}, {'text': 'the the N through uh collaboration have', 'start': 10550.239, 'duration': 7.881}, {'text': 'a highly dense uh medata field including', 'start': 10553.399, 'duration': 7.84}, {'text': 'diseases uh we are also creating things', 'start': 10558.12, 'duration': 5.199}, {'text': 'for the mouse in which the mouse like', 'start': 10561.239, 'duration': 4.281}, {'text': \"it's all about the tool the transgend\", 'start': 10563.319, 'duration': 4.681}, {'text': 'tool so if you wor about diseases there', 'start': 10565.52, 'duration': 5.04}, {'text': 'is already really sort of a deep model', 'start': 10568.0, 'duration': 5.56}, {'text': 'in that so I think we should uh if if', 'start': 10570.56, 'duration': 5.6}, {'text': 'the seizures we should see if those', 'start': 10573.56, 'duration': 4.839}, {'text': 'models in', 'start': 10576.16, 'duration': 4.88}, {'text': 'actually um as I said you got to put', 'start': 10578.399, 'duration': 4.401}, {'text': 'data against the model in order to make', 'start': 10581.04, 'duration': 4.0}, {'text': 'it work so if you have those data set we', 'start': 10582.8, 'duration': 4.84}, {'text': 'have to check if those current model', 'start': 10585.04, 'duration': 5.08}, {'text': 'because they already exist uh do what', 'start': 10587.64, 'duration': 5.28}, {'text': 'you think it should do but knowing that', 'start': 10590.12, 'duration': 5.64}, {'text': \"we know that and there's existing human\", 'start': 10592.92, 'duration': 6.0}, {'text': 'models for the disease so so this is', 'start': 10595.76, 'duration': 5.0}, {'text': 'like like kind of to point so one of the', 'start': 10598.92, 'duration': 3.28}, {'text': 'things that like what really I was', 'start': 10600.76, 'duration': 4.4}, {'text': 'saying that many of this U model kind of', 'start': 10602.2, 'duration': 5.72}, {'text': 'exist we we have to bring this to uh to', 'start': 10605.16, 'duration': 5.88}, {'text': 'B to this model but also like even if', 'start': 10607.92, 'duration': 5.479}, {'text': 'something exists like we still want to', 'start': 10611.04, 'duration': 4.56}, {'text': 'have feedback if something is not', 'start': 10613.399, 'duration': 4.04}, {'text': 'represented in this model yeah because', 'start': 10615.6, 'duration': 4.56}, {'text': \"we we don't have to like fully like we\", 'start': 10617.439, 'duration': 4.641}, {'text': 'could extend yeah and we could', 'start': 10620.16, 'duration': 4.72}, {'text': \"additional model so that's why it's\", 'start': 10622.08, 'duration': 6.159}, {'text': 'yeah just just to add on the complexity', 'start': 10624.88, 'duration': 5.479}, {'text': 'of those study variable may have', 'start': 10628.239, 'duration': 5.801}, {'text': 'multiple Concepts so I think at other', 'start': 10630.359, 'duration': 5.96}, {'text': 'consultion like ni is also proposing', 'start': 10634.04, 'duration': 5.88}, {'text': 'this CDE right the common elements so we', 'start': 10636.319, 'duration': 6.241}, {'text': 'Define like age and diagnosis of this', 'start': 10639.92, 'duration': 7.519}, {'text': \"disase as one CD and there's a I think\", 'start': 10642.56, 'duration': 8.56}, {'text': \"Nom have a CD repository and there's\", 'start': 10647.439, 'duration': 6.561}, {'text': 'also like a consortion approved CD is', 'start': 10651.12, 'duration': 6.279}, {'text': 'like I involved in a covid-19 consortion', 'start': 10654.0, 'duration': 5.96}, {'text': 'and when collecting data we have this', 'start': 10657.399, 'duration': 5.04}, {'text': 'consortion say hey for this type of', 'start': 10659.96, 'duration': 4.84}, {'text': 'study variable this is approved the CD', 'start': 10662.439, 'duration': 6.081}, {'text': 'by our consultion I was thinking uh for', 'start': 10664.8, 'duration': 6.0}, {'text': \"B maybe we can also do something it's\", 'start': 10668.52, 'duration': 4.68}, {'text': 'actually not different from the study', 'start': 10670.8, 'duration': 4.32}, {'text': 'variable or the question we ask in the', 'start': 10673.2, 'duration': 4.279}, {'text': 'survey form basically you have the', 'start': 10675.12, 'duration': 4.52}, {'text': 'question and you have the set of', 'start': 10677.479, 'duration': 6.241}, {'text': 'permissive value set for the CD so just', 'start': 10679.64, 'duration': 6.4}, {'text': \"bring it out yeah so I I'll just add\", 'start': 10683.72, 'duration': 3.679}, {'text': 'that one of the things we were doing for', 'start': 10686.04, 'duration': 5.16}, {'text': 'other areas is using SSS which is a data', 'start': 10687.399, 'duration': 7.0}, {'text': 'element mapping model so that we can', 'start': 10691.2, 'duration': 5.6}, {'text': 'relate to other CDs so I would always', 'start': 10694.399, 'duration': 4.641}, {'text': 'encourage and and Patrick is the boss', 'start': 10696.8, 'duration': 5.72}, {'text': 'here uh for this which is', 'start': 10699.04, 'duration': 6.48}, {'text': 'to to kind of bring in so if somebody', 'start': 10702.52, 'duration': 5.6}, {'text': 'proposes a variable that we already know', 'start': 10705.52, 'duration': 5.0}, {'text': 'exists on CD we can create that exact', 'start': 10708.12, 'duration': 4.64}, {'text': 'mapping through that data element', 'start': 10710.52, 'duration': 4.839}, {'text': \"mapping so that's a kind of thing the\", 'start': 10712.76, 'duration': 4.36}, {'text': 'challenge sometimes with data elements', 'start': 10715.359, 'duration': 5.841}, {'text': 'is they use different U ranges or so', 'start': 10717.12, 'duration': 5.76}, {'text': 'they might need a transport which is', 'start': 10721.2, 'duration': 4.72}, {'text': 'where ssom kind of comes in as a nice', 'start': 10722.88, 'duration': 5.24}, {'text': 'way to link data elements and add a', 'start': 10725.92, 'duration': 5.399}, {'text': 'transform and linkl itself is having um', 'start': 10728.12, 'duration': 5.64}, {'text': 'an extension called Transformers which', 'start': 10731.319, 'duration': 5.361}, {'text': 'is targeted at this idea that people', 'start': 10733.76, 'duration': 4.519}, {'text': 'come up with different names for the', 'start': 10736.68, 'duration': 3.719}, {'text': 'same variables with different value', 'start': 10738.279, 'duration': 4.921}, {'text': 'ranges and uh', 'start': 10740.399, 'duration': 5.96}, {'text': 'in trying to get everybody to accept one', 'start': 10743.2, 'duration': 5.76}, {'text': 'could we just simply remap it and we can', 'start': 10746.359, 'duration': 6.321}, {'text': 'also encode that so we should reuse if', 'start': 10748.96, 'duration': 6.0}, {'text': \"there's a CD that makes sense and for\", 'start': 10752.68, 'duration': 5.0}, {'text': 'anything human there is so much of data', 'start': 10754.96, 'duration': 5.319}, {'text': 'element in the nlm CD repository we', 'start': 10757.68, 'duration': 5.559}, {'text': 'should reuse it possible yeah sorry', 'start': 10760.279, 'duration': 4.521}, {'text': 'remind to say your', 'start': 10763.239, 'duration': 4.361}, {'text': 'name thank', 'start': 10764.8, 'duration': 6.12}, {'text': \"you did say his name I can't remember\", 'start': 10767.6, 'duration': 5.04}, {'text': 'okay my name', 'start': 10770.92, 'duration': 5.559}, {'text': 'is yeah we also have a developing a CD', 'start': 10772.64, 'duration': 7.96}, {'text': 'raing tool so maybe this useful for some', 'start': 10776.479, 'duration': 7.281}, {'text': 'absolutely so I think we should uh move', 'start': 10780.6, 'duration': 5.96}, {'text': 'to next session okay have people added', 'start': 10783.76, 'duration': 5.84}, {'text': 'anything uh I know that was disease so I', 'start': 10786.56, 'duration': 5.24}, {'text': 'will', 'start': 10789.6, 'duration': 2.2}, {'text': \"just oh oh yeah but it's it's not yeah\", 'start': 10791.96, 'duration': 7.16}, {'text': \"let's let's r with\", 'start': 10797.12, 'duration': 5.84}, {'text': 'this um so I would just quickly try to', 'start': 10799.12, 'duration': 5.92}, {'text': \"generate you know I didn't look if\", 'start': 10802.96, 'duration': 7.2}, {'text': \"there's no other uh mistakes but\", 'start': 10805.04, 'duration': 5.12}, {'text': 'um so now you can you can see that um', 'start': 10814.0, 'duration': 7.08}, {'text': 'okay so very SL do it one more time I', 'start': 10818.52, 'duration': 5.879}, {'text': 'just I just Bo up between coln just', 'start': 10821.08, 'duration': 6.319}, {'text': 'before', 'start': 10824.399, 'duration': 3.0}, {'text': 'okay we will ignore Waring for now but', 'start': 10829.96, 'duration': 3.96}, {'text': 'just to', 'start': 10832.96, 'duration': 3.96}, {'text': 'check', 'start': 10833.92, 'duration': 3.0}, {'text': \"um oh no no I'm sorry that's no that's\", 'start': 10840.239, 'duration': 6.801}, {'text': \"uh yes that's correct there I was\", 'start': 10843.72, 'duration': 5.36}, {'text': 'surprised by it', 'start': 10847.04, 'duration': 5.12}, {'text': \"yeah so it's here like um oh okay so\", 'start': 10849.08, 'duration': 6.319}, {'text': 'here like just just open', 'start': 10852.16, 'duration': 6.92}, {'text': 'the new new', 'start': 10855.399, 'duration': 3.681}, {'text': \"model I don't know how this SP this\", 'start': 10861.319, 'duration': 4.241}, {'text': 'is oh', 'start': 10866.319, 'duration': 7.12}, {'text': 'sorry okay so here like you have like uh', 'start': 10869.479, 'duration': 6.88}, {'text': 'like new attributes of disease and also', 'start': 10873.439, 'duration': 7.04}, {'text': 'like you you already have the', 'start': 10876.359, 'duration': 4.12}, {'text': 'uh like set of the permissible value and', 'start': 10881.08, 'duration': 6.8}, {'text': 'one of the uh one of the value for this', 'start': 10884.68, 'duration': 6.04}, {'text': \"yeah so that's exactly like how we we\", 'start': 10887.88, 'duration': 5.68}, {'text': 'can proceed to collect new information', 'start': 10890.72, 'duration': 6.639}, {'text': 'and obviously for big data for big for', 'start': 10893.56, 'duration': 5.679}, {'text': 'Big Value sets that will have to be', 'start': 10897.359, 'duration': 4.841}, {'text': 'dynamically collected so okay so that', 'start': 10899.239, 'duration': 6.641}, {'text': 'was just the um playing with um', 'start': 10902.2, 'duration': 6.68}, {'text': \"spreadsheets now we'll be playing with\", 'start': 10905.88, 'duration': 5.439}, {'text': 'um can you take five minutes for any', 'start': 10908.88, 'duration': 5.84}, {'text': \"questions before forward and I'd like to\", 'start': 10911.319, 'duration': 6.321}, {'text': 'ask if you were to use this for modeling', 'start': 10914.72, 'duration': 6.08}, {'text': 'would you this Google sheet knowing that', 'start': 10917.64, 'duration': 5.12}, {'text': \"you don't have to fill in all the\", 'start': 10920.8, 'duration': 5.0}, {'text': 'fields that you can leave it up to other', 'start': 10922.76, 'duration': 5.719}, {'text': 'curators to fill in some of the details', 'start': 10925.8, 'duration': 4.96}, {'text': 'but just thinking about the kinds of', 'start': 10928.479, 'duration': 5.401}, {'text': 'classes and their attributes that you', 'start': 10930.76, 'duration': 4.639}, {'text': 'would need to', 'start': 10933.88, 'duration': 6.04}, {'text': 'add so um yeah so again like I try to', 'start': 10935.399, 'duration': 9.04}, {'text': 'like make um perhaps I should also like', 'start': 10939.92, 'duration': 6.439}, {'text': 'color coded like the things that are', 'start': 10944.439, 'duration': 5.0}, {'text': 'absolutely necessary but basically like', 'start': 10946.359, 'duration': 7.12}, {'text': 'um most of the things are optional and', 'start': 10949.439, 'duration': 6.241}, {'text': 'some of this will be can be fed', 'start': 10953.479, 'duration': 4.76}, {'text': 'definitely by the curator and by the', 'start': 10955.68, 'duration': 6.04}, {'text': 'modeling group', 'start': 10958.239, 'duration': 3.481}, {'text': \"great question SRA I'm waiting for\", 'start': 10970.52, 'duration': 7.08}, {'text': 'response is there a show of hands you', 'start': 10975.319, 'duration': 3.601}, {'text': \"would not so let's start with the\", 'start': 10977.6, 'duration': 4.04}, {'text': 'negative part of this', 'start': 10978.92, 'duration': 5.12}, {'text': \"question no we'll do with the positive\", 'start': 10981.64, 'duration': 5.52}, {'text': 'but would you use this as a way of', 'start': 10984.04, 'duration': 4.84}, {'text': \"creating models you don't have to touch\", 'start': 10987.16, 'duration': 3.72}, {'text': 'any code anything behind the scenes so', 'start': 10988.88, 'duration': 3.92}, {'text': 'the code that was running can run as a', 'start': 10990.88, 'duration': 3.08}, {'text': 'automated', 'start': 10992.8, 'duration': 4.0}, {'text': \"action it's just a collab collaborative\", 'start': 10993.96, 'duration': 5.88}, {'text': \"space because it's a sheine where\", 'start': 10996.8, 'duration': 4.8}, {'text': 'scientists can add and review each', 'start': 10999.84, 'duration': 2.88}, {'text': \"other's\", 'start': 11001.6, 'duration': 5.679}, {'text': \"models before they're merged\", 'start': 11002.72, 'duration': 4.559}, {'text': 'into well I do think you need you need', 'start': 11009.0, 'duration': 5.64}, {'text': 'something that is kind of', 'start': 11011.359, 'duration': 6.721}, {'text': 'um more transparent like this for side I', 'start': 11014.64, 'duration': 4.759}, {'text': \"don't think you're gonna right they're\", 'start': 11018.08, 'duration': 4.8}, {'text': 'not going to interact with Pon API so I', 'start': 11019.399, 'duration': 5.0}, {'text': 'think this is I think this is a good', 'start': 11022.88, 'duration': 5.12}, {'text': 'approach I think you know', 'start': 11024.399, 'duration': 6.201}, {'text': 'also um you', 'start': 11028.0, 'duration': 6.0}, {'text': 'guys I think for a lot of the human', 'start': 11030.6, 'duration': 4.44}, {'text': 'there is', 'start': 11034.0, 'duration': 3.68}, {'text': \"already sheet so if we didn't have to do\", 'start': 11035.04, 'duration': 6.199}, {'text': 'the work to translate from one set of', 'start': 11037.68, 'duration': 6.36}, {'text': 'things to the other be automated yeah I', 'start': 11041.239, 'duration': 4.361}, {'text': \"mean absolutely yes so and that's\", 'start': 11044.04, 'duration': 3.439}, {'text': 'something I think an LM can do really', 'start': 11045.6, 'duration': 4.36}, {'text': 'really well so we should be able to use', 'start': 11047.479, 'duration': 3.84}, {'text': 'those to at least even create that', 'start': 11049.96, 'duration': 4.96}, {'text': \"initial ver yeah so it's easy yeah and\", 'start': 11051.319, 'duration': 5.08}, {'text': \"we've already filled out those sheets\", 'start': 11054.92, 'duration': 4.479}, {'text': 'yeah', 'start': 11056.399, 'duration': 3.0}, {'text': 'and I know that for example like also', 'start': 11061.319, 'duration': 3.681}, {'text': 'like the work that P was doing she was', 'start': 11062.88, 'duration': 4.24}, {'text': 'also using recently very', 'start': 11065.0, 'duration': 4.84}, {'text': 'similar um spreadsheets to collect some', 'start': 11067.12, 'duration': 4.64}, {'text': 'of this information for special', 'start': 11069.84, 'duration': 4.2}, {'text': \"transcript onic here so that's that's\", 'start': 11071.76, 'duration': 4.84}, {'text': 'already like that was feedback from the', 'start': 11074.04, 'duration': 5.0}, {'text': \"from scientists that that's how often\", 'start': 11076.6, 'duration': 6.16}, {'text': 'like the data is metadata is', 'start': 11079.04, 'duration': 5.52}, {'text': \"collected I don't know if I I don't\", 'start': 11082.76, 'duration': 4.16}, {'text': 'think I have any answer to the question', 'start': 11084.56, 'duration': 4.08}, {'text': 'necessarily but', 'start': 11086.92, 'duration': 4.96}, {'text': 'maybe a question within that so I can', 'start': 11088.64, 'duration': 6.16}, {'text': 'interpret where this sort of fits in the', 'start': 11091.88, 'duration': 4.64}, {'text': 'previous comment I think a lot of the', 'start': 11094.8, 'duration': 3.8}, {'text': 'donor information is standardized', 'start': 11096.52, 'duration': 4.799}, {'text': 'through n or increasingly should be so', 'start': 11098.6, 'duration': 4.759}, {'text': \"I'm trying to think okay within bin with\", 'start': 11101.319, 'duration': 2.92}, {'text': 'some of the other infrastructure in', 'start': 11103.359, 'duration': 2.321}, {'text': 'place where does this fit in one of the', 'start': 11104.239, 'duration': 4.801}, {'text': 'places that comes to mind is um sell', 'start': 11105.68, 'duration': 6.84}, {'text': 'features that might get created during', 'start': 11109.04, 'duration': 5.92}, {'text': \"analysis B the different groups and it's\", 'start': 11112.52, 'duration': 4.879}, {'text': 'more exploratory and maybe more bespoke', 'start': 11114.96, 'duration': 3.92}, {'text': \"because they're doing vir looking\", 'start': 11117.399, 'duration': 2.84}, {'text': 'specific things but they want to', 'start': 11118.88, 'duration': 2.96}, {'text': 'describe those they want to relate it to', 'start': 11120.239, 'duration': 5.801}, {'text': 'other stuff and having that kind of um', 'start': 11121.84, 'duration': 5.639}, {'text': 'descriptions and clarification about', 'start': 11126.04, 'duration': 2.56}, {'text': 'what these features are how they were', 'start': 11127.479, 'duration': 3.721}, {'text': 'made would be super helpful and is that', 'start': 11128.6, 'duration': 3.639}, {'text': 'one of the places you all see this', 'start': 11131.2, 'duration': 3.119}, {'text': 'fitting in or or if not where how does', 'start': 11132.239, 'duration': 5.08}, {'text': 'to the other St so one part of the', 'start': 11134.319, 'duration': 5.321}, {'text': 'question and a hope is that if for', 'start': 11137.319, 'duration': 4.241}, {'text': \"example there's no schema for something\", 'start': 11139.64, 'duration': 5.16}, {'text': 'in something like this could be used to', 'start': 11141.56, 'duration': 5.56}, {'text': 'generate a scha for M right that way we', 'start': 11144.8, 'duration': 4.04}, {'text': 'get connection because right now we', 'start': 11147.12, 'duration': 3.319}, {'text': 'doing a little bit of mapping and', 'start': 11148.84, 'duration': 3.76}, {'text': 'translation between the things at least', 'start': 11150.439, 'duration': 4.521}, {'text': 'Within by hand you should see a uniform', 'start': 11152.6, 'duration': 5.36}, {'text': 'Model come up the second thing yes', 'start': 11154.96, 'duration': 4.76}, {'text': 'anytime somebody does come up with a', 'start': 11157.96, 'duration': 4.399}, {'text': 'class or whatever this would be a way of', 'start': 11159.72, 'duration': 5.12}, {'text': \"saying I'm describing this thing and\", 'start': 11162.359, 'duration': 4.0}, {'text': 'here are some Properties or features', 'start': 11164.84, 'duration': 4.84}, {'text': \"that I'm interested in and this is again\", 'start': 11166.359, 'duration': 5.561}, {'text': 'I see this as very simple but I saw also', 'start': 11169.68, 'duration': 5.16}, {'text': 'see and python is very simple but hence', 'start': 11171.92, 'duration': 4.88}, {'text': 'this is where we need to put the test in', 'start': 11174.84, 'duration': 6.2}, {'text': 'front of s is to see they will use', 'start': 11176.8, 'duration': 4.24}, {'text': 'it having D food doing a ra link ML and', 'start': 11184.359, 'duration': 8.841}, {'text': 'collaborating with d to put the entire', 'start': 11190.439, 'duration': 5.161}, {'text': 'Library generation thing in it the', 'start': 11193.2, 'duration': 5.039}, {'text': 'spreadsheet was good because I can see', 'start': 11195.6, 'duration': 5.6}, {'text': 'things of the glass uh what would be', 'start': 11198.239, 'duration': 5.841}, {'text': 'even better is a build build a schema', 'start': 11201.2, 'duration': 4.64}, {'text': 'tool like what do you want to build', 'start': 11204.08, 'duration': 4.6}, {'text': 'today I want to build a class that that', 'start': 11205.84, 'duration': 6.8}, {'text': \"would be even better because it's still\", 'start': 11208.68, 'duration': 5.799}, {'text': 'non-transparent what happens when you', 'start': 11212.64, 'duration': 5.28}, {'text': 'stick something but the you know a', 'start': 11214.479, 'duration': 6.121}, {'text': 'schema Builder thing would be great if', 'start': 11217.92, 'duration': 4.88}, {'text': 'someone is and then then you can add the', 'start': 11220.6, 'duration': 4.639}, {'text': 'rules and restriction you know you are', 'start': 11222.8, 'duration': 4.24}, {'text': 'you really want do you really sure you', 'start': 11225.239, 'duration': 3.841}, {'text': 'want to build your CL like this that', 'start': 11227.04, 'duration': 3.96}, {'text': 'would be great', 'start': 11229.08, 'duration': 5.72}, {'text': 'right Next Step be so also like next', 'start': 11231.0, 'duration': 7.92}, {'text': 'undergrad research project', 'start': 11234.8, 'duration': 4.12}, {'text': \"but actually like it's partially like I\", 'start': 11239.68, 'duration': 4.799}, {'text': 'think what was I like pal feedback she', 'start': 11241.479, 'duration': 5.721}, {'text': 'was adding additional description that I', 'start': 11244.479, 'duration': 4.721}, {'text': 'should have added here as well what to', 'start': 11247.2, 'duration': 7.92}, {'text': 'put exactly in this in this um columns', 'start': 11249.2, 'duration': 5.92}, {'text': \"but I'm just thinking about this and I\", 'start': 11256.6, 'duration': 7.52}, {'text': \"I'm can you send me on like teams right\", 'start': 11259.52, 'duration': 4.6}, {'text': \"now so I'm really interested in this\", 'start': 11264.16, 'duration': 5.159}, {'text': 'because we kind of so with the the', 'start': 11267.08, 'duration': 4.0}, {'text': 'taxonomies and this actually fits quite', 'start': 11269.319, 'duration': 4.16}, {'text': 'closely with what um Ty was just saiding', 'start': 11271.08, 'duration': 5.04}, {'text': 'with the taxonomies we get you think of', 'start': 11273.479, 'duration': 3.88}, {'text': 'them more', 'start': 11276.12, 'duration': 4.159}, {'text': 'broadly um during development of', 'start': 11277.359, 'duration': 4.88}, {'text': 'taxonomies when somebody publishes a', 'start': 11280.279, 'duration': 5.12}, {'text': \"paper there's often some huge t with\", 'start': 11282.239, 'duration': 5.801}, {'text': 'many disp columns with different types', 'start': 11285.399, 'duration': 5.0}, {'text': 'of analysis and stuff like that in them', 'start': 11288.04, 'duration': 5.12}, {'text': 'and in our text system we fold those in', 'start': 11290.399, 'duration': 5.641}, {'text': \"and we've got ways to actually you know\", 'start': 11293.16, 'duration': 4.8}, {'text': 'add new columns and start to add some', 'start': 11296.04, 'duration': 5.0}, {'text': \"structure to those things um but we're\", 'start': 11297.96, 'duration': 5.24}, {'text': \"also using linkl as well and I'm really\", 'start': 11301.04, 'duration': 4.76}, {'text': 'interested in in the common ways that we', 'start': 11303.2, 'duration': 4.88}, {'text': 'could so we have ways to work through a', 'start': 11305.8, 'duration': 4.16}, {'text': \"table based system it's not Google\", 'start': 11308.08, 'duration': 5.399}, {'text': 'Sheets to do this stuff um definitely', 'start': 11309.96, 'duration': 5.0}, {'text': 'interesting to look at Google Sheets but', 'start': 11313.479, 'duration': 3.8}, {'text': 'I think we should talk about how we', 'start': 11314.96, 'duration': 4.64}, {'text': \"could make sure that how when we're\", 'start': 11317.279, 'duration': 3.841}, {'text': 'getting people so this is actually', 'start': 11319.6, 'duration': 2.759}, {'text': \"getting the scientists they've already\", 'start': 11321.12, 'duration': 3.68}, {'text': \"got their taxonomy they've already got a\", 'start': 11322.359, 'duration': 3.841}, {'text': 'bunch of columns and they want to try', 'start': 11324.8, 'duration': 3.679}, {'text': 'and formalize that a little bit start to', 'start': 11326.2, 'duration': 4.48}, {'text': 'move towards formalizing that', 'start': 11328.479, 'duration': 3.681}, {'text': 'potentially gives you a community of', 'start': 11330.68, 'duration': 3.08}, {'text': 'people are already working in a spread', 'start': 11332.16, 'duration': 4.44}, {'text': 'sheet and then want to one of sort of', 'start': 11333.76, 'duration': 5.12}, {'text': 'easy ways to generate these schemas so I', 'start': 11336.6, 'duration': 4.4}, {'text': \"think there's a lot of potential Synergy\", 'start': 11338.88, 'duration': 4.96}, {'text': 'here I just also very quickly want show', 'start': 11341.0, 'duration': 6.8}, {'text': 'what uh P was sending so this was before', 'start': 11343.84, 'duration': 7.559}, {'text': 'the the converter was uh finalized but', 'start': 11347.8, 'duration': 6.479}, {'text': 'we work at some point with group with p', 'start': 11351.399, 'duration': 5.721}, {'text': 'and Patrick and P and others that you', 'start': 11354.279, 'duration': 5.0}, {'text': 'you know thinking about this columns so', 'start': 11357.12, 'duration': 4.72}, {'text': 'here like for example like added like', 'start': 11359.279, 'duration': 7.441}, {'text': 'more like um like a like better', 'start': 11361.84, 'duration': 8.36}, {'text': 'instruction that uh focusing mostly like', 'start': 11366.72, 'duration': 6.48}, {'text': 'like on scientists what kind of', 'start': 11370.2, 'duration': 5.159}, {'text': 'information they should they should put', 'start': 11373.2, 'duration': 4.64}, {'text': 'here so I I also like think that', 'start': 11375.359, 'duration': 6.721}, {'text': \"probably that's we also like should um\", 'start': 11377.84, 'duration': 5.599}, {'text': 'to', 'start': 11382.08, 'duration': 5.08}, {'text': 'know yes so just uh for a little context', 'start': 11383.439, 'duration': 5.081}, {'text': 'um so we kind of went through an', 'start': 11387.16, 'duration': 3.48}, {'text': 'exercise similar to this this naal', 'start': 11388.52, 'duration': 5.52}, {'text': 'working group where we trying to get', 'start': 11390.64, 'duration': 6.96}, {'text': 'metadata definition um and kind of the', 'start': 11394.04, 'duration': 6.84}, {'text': 'you know the motivator for this is for', 'start': 11397.6, 'duration': 5.44}, {'text': 'um you know data archiving so still', 'start': 11400.88, 'duration': 4.28}, {'text': 'wanted to build up a new module or Med', 'start': 11403.04, 'duration': 4.08}, {'text': 'that they collect to go along with', 'start': 11405.16, 'duration': 4.6}, {'text': 'experiments um so kind of worked with', 'start': 11407.12, 'duration': 4.04}, {'text': 'Bri Bill who was building this new', 'start': 11409.76, 'duration': 3.639}, {'text': 'module and then we took that data model', 'start': 11411.16, 'duration': 4.76}, {'text': 'that our scientists along with um Lydia', 'start': 11413.399, 'duration': 4.88}, {'text': 'and some of our product managers so that', 'start': 11415.92, 'duration': 5.6}, {'text': 'b diagram that that D show the really', 'start': 11418.279, 'duration': 5.481}, {'text': \"expanded purple and orange boxes that's\", 'start': 11421.52, 'duration': 3.68}, {'text': 'like a process diagram and I think', 'start': 11423.76, 'duration': 4.08}, {'text': \"that's helpful because you know thinking\", 'start': 11425.2, 'duration': 4.119}, {'text': 'about breaking the experiment down into', 'start': 11427.84, 'duration': 3.88}, {'text': 'steps like tissue processing you know', 'start': 11429.319, 'duration': 4.801}, {'text': 'the bench chemistry um you where you', 'start': 11431.72, 'duration': 4.639}, {'text': 'apply your reagents the staining so you', 'start': 11434.12, 'duration': 3.84}, {'text': 'know think about the protocol and steps', 'start': 11436.359, 'duration': 3.201}, {'text': 'then think about okay what are the', 'start': 11437.96, 'duration': 3.16}, {'text': 'meditative fields that are associated', 'start': 11439.56, 'duration': 3.16}, {'text': 'with those steps that you you know if', 'start': 11441.12, 'duration': 3.04}, {'text': \"you were look someone else's experiments\", 'start': 11442.72, 'duration': 3.4}, {'text': \"You' want to collect that metadata you\", 'start': 11444.16, 'duration': 4.279}, {'text': 'need that for analysis or you know want', 'start': 11446.12, 'duration': 4.4}, {'text': 'to search and catalog for that stuff so', 'start': 11448.439, 'duration': 4.201}, {'text': 'it kind of gives a little context for', 'start': 11450.52, 'duration': 3.52}, {'text': 'you know instead of just generating a', 'start': 11452.64, 'duration': 4.4}, {'text': 'giant list of people Med like you know', 'start': 11454.04, 'duration': 4.68}, {'text': 'pull the experiment apart into steps', 'start': 11457.04, 'duration': 3.16}, {'text': 'pull you know the different tasks that', 'start': 11458.72, 'duration': 3.44}, {'text': 'you want to do bi just Tas you know what', 'start': 11460.2, 'duration': 3.68}, {'text': 'are the few fields that are you know the', 'start': 11462.16, 'duration': 3.279}, {'text': 'minimal thing you would want to be able', 'start': 11463.88, 'duration': 3.479}, {'text': 'to describe the experiment for those', 'start': 11465.439, 'duration': 3.96}, {'text': 'stages so this looks like a big thing', 'start': 11467.359, 'duration': 4.88}, {'text': \"and it's you know but it's kind of it's\", 'start': 11469.399, 'duration': 4.281}, {'text': 'you know the whole process that goes', 'start': 11472.239, 'duration': 3.321}, {'text': 'into putting those sheets together maybe', 'start': 11473.68, 'duration': 3.24}, {'text': 'like a little bit more instruction a', 'start': 11475.56, 'duration': 3.28}, {'text': 'little bit are thinking about you know', 'start': 11476.92, 'duration': 3.24}, {'text': 'how the scientists themselves think', 'start': 11478.84, 'duration': 3.08}, {'text': 'about how they would start to pull these', 'start': 11480.16, 'duration': 4.079}, {'text': 'experiments apart and describe them so', 'start': 11481.92, 'duration': 4.04}, {'text': 'so yeah this is kind of our first attemp', 'start': 11484.239, 'duration': 3.961}, {'text': 'doctor you know JY group work with the', 'start': 11485.96, 'duration': 5.279}, {'text': 'library minimal metadata with the vs we', 'start': 11488.2, 'duration': 5.079}, {'text': 'had you know kind of a we want talk', 'start': 11491.239, 'duration': 3.361}, {'text': 'quicker turnover people already', 'start': 11493.279, 'duration': 2.921}, {'text': 'generating data sets they need to move', 'start': 11494.6, 'duration': 3.879}, {'text': 'off their own storage because these are', 'start': 11496.2, 'duration': 3.96}, {'text': 'really massive data sets that need to', 'start': 11498.479, 'duration': 6.081}, {'text': 'arive um so yeah so you know I think um', 'start': 11500.16, 'duration': 5.64}, {'text': \"I don't know if someone want to comment\", 'start': 11504.56, 'duration': 2.48}, {'text': 'you know there a couple people from the', 'start': 11505.8, 'duration': 3.28}, {'text': \"world group here you know I'm just I'm\", 'start': 11507.04, 'duration': 3.399}, {'text': 'not sure this was you know necessarily', 'start': 11509.08, 'duration': 3.68}, {'text': 'the perfect procedure but I think it was', 'start': 11510.439, 'duration': 3.92}, {'text': 'you know I started out by filling in', 'start': 11512.76, 'duration': 3.2}, {'text': 'some stuff with our own scientists about', 'start': 11514.359, 'duration': 2.96}, {'text': 'you know what they would want to collect', 'start': 11515.96, 'duration': 2.64}, {'text': 'then we kind of went through a DAT', 'start': 11517.319, 'duration': 3.08}, {'text': 'process with the whole working group um', 'start': 11518.6, 'duration': 3.36}, {'text': 'you know on a platform by platform basis', 'start': 11520.399, 'duration': 3.201}, {'text': 'as well because you this is kind of', 'start': 11521.96, 'duration': 3.56}, {'text': 'generically for Imaging based spal', 'start': 11523.6, 'duration': 3.52}, {'text': 'transomics and the different platforms', 'start': 11525.52, 'duration': 4.4}, {'text': 'have different field that you collect as', 'start': 11527.12, 'duration': 4.56}, {'text': 'well so you want to be able to to take', 'start': 11529.92, 'duration': 3.64}, {'text': 'that into consider as well not', 'start': 11531.68, 'duration': 5.16}, {'text': 'everything can be required for for every', 'start': 11533.56, 'duration': 4.24}, {'text': 'te', 'start': 11536.84, 'duration': 3.72}, {'text': \"and this was also like it's uh at some\", 'start': 11537.8, 'duration': 4.4}, {'text': 'point also like for the library', 'start': 11540.56, 'duration': 3.799}, {'text': 'generation it was also like that was', 'start': 11542.2, 'duration': 4.8}, {'text': 'given us as a spreadsheet as well so', 'start': 11544.359, 'duration': 5.161}, {'text': 'that was also like the place that we', 'start': 11547.0, 'duration': 6.0}, {'text': 'started like um extracting the metadata', 'start': 11549.52, 'duration': 5.919}, {'text': 'from the library generation like and the', 'start': 11553.0, 'duration': 5.279}, {'text': 'um working group was collecting that was', 'start': 11555.439, 'duration': 6.241}, {'text': \"collecting this as well right so I'm\", 'start': 11558.279, 'duration': 5.761}, {'text': 'really with p on this and we have some', 'start': 11561.68, 'duration': 6.44}, {'text': 'discussions in the St trans need working', 'start': 11564.04, 'duration': 6.8}, {'text': 'group as well that you know when we', 'start': 11568.12, 'duration': 5.52}, {'text': 'started work on Li minimum data we work', 'start': 11570.84, 'duration': 5.2}, {'text': 'through you know some process how to', 'start': 11573.64, 'duration': 4.759}, {'text': 'develop it how to work with everybody', 'start': 11576.04, 'duration': 4.84}, {'text': 'and then obviously pan is working on the', 'start': 11578.399, 'duration': 6.761}, {'text': 'state eics metadata and so you know we', 'start': 11580.88, 'duration': 6.84}, {'text': 'are large consortion right and when we', 'start': 11585.16, 'duration': 5.239}, {'text': \"work through this process I think it's a\", 'start': 11587.72, 'duration': 5.84}, {'text': 'good idea to for you know everybody have', 'start': 11590.399, 'duration': 5.04}, {'text': 'this kind of experience to work together', 'start': 11593.56, 'duration': 4.08}, {'text': 'develop some kind of um standard', 'start': 11595.439, 'duration': 4.88}, {'text': 'operating procedure so that we can sort', 'start': 11597.64, 'duration': 6.12}, {'text': 'of then when people in the future need', 'start': 11600.319, 'duration': 6.08}, {'text': 'to work on some meod data they can', 'start': 11603.76, 'duration': 6.16}, {'text': 'follow you know the procedure and to', 'start': 11606.399, 'duration': 6.561}, {'text': 'sort of avoid some of the uh you', 'start': 11609.92, 'duration': 5.479}, {'text': 'obstacles we already encountered and', 'start': 11612.96, 'duration': 5.479}, {'text': 'also have this standardized way to', 'start': 11615.399, 'duration': 7.04}, {'text': 'develop metadata and um I think now we', 'start': 11618.439, 'duration': 7.121}, {'text': 'have this like the LI minim met when we', 'start': 11622.439, 'duration': 5.281}, {'text': 'develop it we also B with you you know', 'start': 11625.56, 'duration': 5.879}, {'text': \"in the end develop thatl so it's like a\", 'start': 11627.72, 'duration': 7.36}, {'text': 'full process if we can sort of have a c', 'start': 11631.439, 'duration': 7.161}, {'text': 'operating procedure then everybody will', 'start': 11635.08, 'duration': 5.44}, {'text': 'develop m in the future they have', 'start': 11638.6, 'duration': 3.92}, {'text': 'something to follow and then they can', 'start': 11640.52, 'duration': 4.04}, {'text': \"obviously you know nothing's going to be\", 'start': 11642.52, 'duration': 4.919}, {'text': 'perfect they can further improve the', 'start': 11644.56, 'duration': 5.64}, {'text': 'process we are kind of like I mean many', 'start': 11647.439, 'duration': 4.561}, {'text': 'things have to be added to the model', 'start': 11650.2, 'duration': 3.72}, {'text': 'because data was coming from we kind of', 'start': 11652.0, 'duration': 6.2}, {'text': \"like your experience P's experience to\", 'start': 11653.92, 'duration': 6.2}, {'text': 'bring something that might be useful in', 'start': 11658.2, 'duration': 4.92}, {'text': \"the future so that's why is\", 'start': 11660.12, 'duration': 6.0}, {'text': \"very one text I think I'm add that this\", 'start': 11663.12, 'duration': 4.84}, {'text': 'is where I think getting data to flow', 'start': 11666.12, 'duration': 4.56}, {'text': 'through the model is really critical and', 'start': 11667.96, 'duration': 5.76}, {'text': \"where we don't develop the model in vo\", 'start': 11670.68, 'duration': 6.799}, {'text': 'but actually even after doing', 'start': 11673.72, 'duration': 8.0}, {'text': 'this we still have to do a lot of twe', 'start': 11677.479, 'duration': 8.201}, {'text': 'data we FL through it yeah so so that', 'start': 11681.72, 'duration': 6.04}, {'text': 'part should also you know', 'start': 11685.68, 'duration': 4.599}, {'text': 'guys do a lot of things to make it work', 'start': 11687.76, 'duration': 4.96}, {'text': 'right that should also be building into', 'start': 11690.279, 'duration': 6.721}, {'text': 'this procedure so that in the future so', 'start': 11692.72, 'duration': 6.32}, {'text': 'people can avoid those things oh you', 'start': 11697.0, 'duration': 4.279}, {'text': 'know this is how we should do it so that', 'start': 11699.04, 'duration': 3.88}, {'text': \"they're not going to make same mistake\", 'start': 11701.279, 'duration': 5.881}, {'text': 'or become issue you already resolved', 'start': 11702.92, 'duration': 7.96}, {'text': 'so I I think that the procedure that', 'start': 11707.16, 'duration': 6.56}, {'text': 'that that working I think we need to', 'start': 11710.88, 'duration': 5.8}, {'text': \"work in this Fe it's like building code\", 'start': 11713.72, 'duration': 4.679}, {'text': 'should be building Cod you s in the', 'start': 11716.68, 'duration': 5.12}, {'text': 'Google sheet you actuate it did it all L', 'start': 11718.399, 'duration': 5.601}, {'text': 'together can we pop some data into it so', 'start': 11721.8, 'duration': 3.519}, {'text': \"I agree with what you're saying we're\", 'start': 11724.0, 'duration': 3.439}, {'text': 'just saying we should have that tool as', 'start': 11725.319, 'duration': 4.481}, {'text': 'part of that working group as well so we', 'start': 11727.439, 'duration': 4.96}, {'text': \"got to test it just like to it can't be\", 'start': 11729.8, 'duration': 4.679}, {'text': 'uh so that we make sure it works every', 'start': 11732.399, 'duration': 5.08}, {'text': 'time we add something we add our test', 'start': 11734.479, 'duration': 6.641}, {'text': 'data to it we do you know Black Box', 'start': 11737.479, 'duration': 5.92}, {'text': 'testing to it and then I think then then', 'start': 11741.12, 'duration': 5.0}, {'text': 'you can like keep living on forever I', 'start': 11743.399, 'duration': 4.521}, {'text': 'think', 'start': 11746.12, 'duration': 4.4}, {'text': 'yeah I think I forget to say that that', 'start': 11747.92, 'duration': 5.04}, {'text': 'is like very important is actually the', 'start': 11750.52, 'duration': 7.0}, {'text': 'idea that the Met met can can change and', 'start': 11752.96, 'duration': 7.0}, {'text': 'so that we have one place is changing', 'start': 11757.52, 'duration': 6.56}, {'text': 'and we can like put some some this and', 'start': 11759.96, 'duration': 7.88}, {'text': \"then also I get everything so it's\", 'start': 11764.08, 'duration': 8.8}, {'text': 'also in and kind ofs on of this and we', 'start': 11767.84, 'duration': 8.76}, {'text': \"don't have to change it places so right\", 'start': 11772.88, 'duration': 6.28}, {'text': \"so that's I think those all can be part\", 'start': 11776.6, 'duration': 4.96}, {'text': \"of the procedure right so I mean it's\", 'start': 11779.16, 'duration': 4.96}, {'text': \"like it's like a full cycle you know you\", 'start': 11781.56, 'duration': 6.04}, {'text': 'develop a metadata and then what after', 'start': 11784.12, 'duration': 6.119}, {'text': 'that you know you have a metadata there', 'start': 11787.6, 'duration': 5.4}, {'text': 'there might be need updated might be', 'start': 11790.239, 'duration': 4.801}, {'text': 'Arrow correct there may be something', 'start': 11793.0, 'duration': 5.279}, {'text': 'right so that all be part of the', 'start': 11795.04, 'duration': 5.84}, {'text': 'procedure so that when when we say Okay', 'start': 11798.279, 'duration': 3.96}, {'text': 'somebody else is going to develop', 'start': 11800.88, 'duration': 3.76}, {'text': 'metadata in the future they have a full', 'start': 11802.239, 'duration': 5.04}, {'text': 'cycle of procedure they can follow L', 'start': 11804.64, 'duration': 4.799}, {'text': \"just say oh I developed it and that's it\", 'start': 11807.279, 'duration': 7.401}, {'text': \"no no that's why that's the idea idea\", 'start': 11809.439, 'duration': 5.241}, {'text': 'exactly um hearing the last part of the', 'start': 11817.6, 'duration': 4.96}, {'text': 'discussion the comments about having', 'start': 11820.8, 'duration': 4.2}, {'text': \"data flow through this I'm wondering if\", 'start': 11822.56, 'duration': 4.12}, {'text': \"we've got a\", 'start': 11825.0, 'duration': 4.88}, {'text': 'good opportunity in the near term', 'start': 11826.68, 'duration': 6.2}, {'text': 'to try and try and have multiple groups', 'start': 11829.88, 'duration': 5.0}, {'text': 'across the B can data', 'start': 11832.88, 'duration': 4.559}, {'text': 'ecosystem propagate a change to some', 'start': 11834.88, 'duration': 5.08}, {'text': 'Central model and try to test this idea', 'start': 11837.439, 'duration': 5.0}, {'text': 'out I think if this modeling just feeds', 'start': 11839.96, 'duration': 4.279}, {'text': 'into the knowledge base directly and we', 'start': 11842.439, 'duration': 3.96}, {'text': 'sort of have', 'start': 11844.239, 'duration': 6.721}, {'text': 'then it maybe limits the opportunity for', 'start': 11846.399, 'duration': 7.721}, {'text': 'um taking advantage of links tooling and', 'start': 11850.96, 'duration': 4.92}, {'text': 'the the investment and sort of central', 'start': 11854.12, 'duration': 3.279}, {'text': 'modeling like you guys are suggesting', 'start': 11855.88, 'duration': 4.2}, {'text': 'but if we can you know update', 'start': 11857.399, 'duration': 4.361}, {'text': 'descriptions or split a piece of', 'start': 11860.08, 'duration': 3.6}, {'text': 'metadata into two in a systematic way', 'start': 11861.76, 'duration': 5.4}, {'text': 'and then propagate that to NY and the', 'start': 11863.68, 'duration': 5.88}, {'text': 'archives and the Nos and so on that', 'start': 11867.16, 'duration': 4.119}, {'text': 'would be sort of incredible which I know', 'start': 11869.56, 'duration': 3.36}, {'text': 'you guys are thinking about so my I', 'start': 11871.279, 'duration': 5.361}, {'text': 'guess the question is is there um a bite', 'start': 11872.92, 'duration': 5.519}, {'text': 'size or at least shortterm opportunity', 'start': 11876.64, 'duration': 4.759}, {'text': 'you see around that that maybe we maybe', 'start': 11878.439, 'duration': 4.161}, {'text': 'over the next couple days but also maybe', 'start': 11881.399, 'duration': 4.201}, {'text': 'inside of it we could rally', 'start': 11882.6, 'duration': 3.0}, {'text': 'around the tool the two that are very', 'start': 11889.399, 'duration': 5.681}, {'text': 'exciting is p pant already on deck for', 'start': 11892.0, 'duration': 6.88}, {'text': 'spal transonic the other one is uh', 'start': 11895.08, 'duration': 6.72}, {'text': 'transgenic line because we had', 'start': 11898.88, 'duration': 6.28}, {'text': 'deliberately made that not part of uh', 'start': 11901.8, 'duration': 5.92}, {'text': \"back hand because there's a lot of human\", 'start': 11905.16, 'duration': 5.319}, {'text': 'uh uh you know worry about getting a', 'start': 11907.72, 'duration': 5.16}, {'text': 'brain bang but the transgendering line', 'start': 11910.479, 'duration': 5.041}, {'text': \"is the it's the the thing that allows to\", 'start': 11912.88, 'duration': 6.12}, {'text': 'do science that go that model and then', 'start': 11915.52, 'duration': 5.759}, {'text': 'making it go through nip all the way', 'start': 11919.0, 'duration': 4.08}, {'text': 'back to the knowledge base would be', 'start': 11921.279, 'duration': 3.92}, {'text': \"great right because that's the thing\", 'start': 11923.08, 'duration': 4.359}, {'text': 'that people just type in their random', 'start': 11925.199, 'duration': 4.761}, {'text': 'not random everybody has a slightly', 'start': 11927.439, 'duration': 3.88}, {'text': 'different way they like to call a', 'start': 11929.96, 'duration': 4.279}, {'text': 'transgenic line uh their identifi for', 'start': 11931.319, 'duration': 5.401}, {'text': 'them in MGI we should start introducing', 'start': 11934.239, 'duration': 4.921}, {'text': \"them so that's the second buts side\", 'start': 11936.72, 'duration': 5.08}, {'text': 'thing that up our alley I think we', 'start': 11939.16, 'duration': 4.88}, {'text': 'should', 'start': 11941.8, 'duration': 2.24}, {'text': 'do all', 'start': 11944.479, 'duration': 5.241}, {'text': 'right maybe we continue with tech but', 'start': 11947.04, 'duration': 3.96}, {'text': \"we'll come back to some of these\", 'start': 11949.72, 'duration': 4.36}, {'text': 'questions we here for few more days', 'start': 11951.0, 'duration': 6.0}, {'text': \"so and that's\", 'start': 11954.08, 'duration': 6.92}, {'text': 'next session we be we', 'start': 11957.0, 'duration': 4.0}, {'text': 'ask someone', 'start': 11961.6, 'duration': 5.4}, {'text': 'wants yes', 'start': 11963.68, 'duration': 6.88}, {'text': 'yes following the convention my name is', 'start': 11967.0, 'duration': 5.56}, {'text': 'so I work with', 'start': 11970.56, 'duration': 4.919}, {'text': 'SRA this exercise is more about the', 'start': 11972.56, 'duration': 7.839}, {'text': 'future of knowledge I was talking before', 'start': 11975.479, 'duration': 7.401}, {'text': 'so in this exercise what we are asking', 'start': 11980.399, 'duration': 5.521}, {'text': 'you is to have your say how you want to', 'start': 11982.88, 'duration': 6.2}, {'text': 'have the future knowledge infrastructur', 'start': 11985.92, 'duration': 7.2}, {'text': 'particularly The Entity card because me', 'start': 11989.08, 'duration': 6.8}, {'text': \"I'm a computer scientist so I work with\", 'start': 11993.12, 'duration': 5.159}, {'text': \"data things I don't know I don't have\", 'start': 11995.88, 'duration': 5.359}, {'text': 'the domain experience like you do so', 'start': 11998.279, 'duration': 4.841}, {'text': 'what is important for you how you want', 'start': 12001.239, 'duration': 3.361}, {'text': 'the entity card to', 'start': 12003.12, 'duration': 5.84}, {'text': \"be uh that's what this exercise is about\", 'start': 12004.6, 'duration': 7.56}, {'text': 'so you can see one of the entity that uh', 'start': 12008.96, 'duration': 6.56}, {'text': 'we have I show this application that we', 'start': 12012.16, 'duration': 5.48}, {'text': 'have been building the structure in a', 'start': 12015.52, 'duration': 6.679}, {'text': 'bit and how you would want to design', 'start': 12017.64, 'duration': 8.839}, {'text': 'it and since we just starting to build', 'start': 12022.199, 'duration': 7.16}, {'text': 'this infrastructure so how you would', 'start': 12026.479, 'duration': 4.641}, {'text': \"want what kind of information You' want\", 'start': 12029.359, 'duration': 5.681}, {'text': 'to have it on those entity cards let me', 'start': 12031.12, 'duration': 9.52}, {'text': 'move back to the loation', 'start': 12035.04, 'duration': 5.6}, {'text': 'you can visit uh this bra K that we have', 'start': 12048.96, 'duration': 9.6}, {'text': 'been building uh beta.org currently we', 'start': 12053.16, 'duration': 8.92}, {'text': 'have 17 species 49 donor these are the', 'start': 12058.56, 'duration': 4.44}, {'text': 'total', 'start': 12062.08, 'duration': 3.119}, {'text': 'samples I hate to bring it to you I', 'start': 12063.0, 'duration': 6.0}, {'text': 'think MIT guest is blocking that', 'start': 12065.199, 'duration': 3.801}, {'text': 'website okay I apologize I', 'start': 12074.199, 'duration': 4.361}, {'text': 'but', 'start': 12078.8, 'duration': 2.2}, {'text': 'please you want to', 'start': 12086.319, 'duration': 6.481}, {'text': 'describe right so you can get to the', 'start': 12089.399, 'duration': 5.92}, {'text': 'knowledge base and then you should see', 'start': 12092.8, 'duration': 5.0}, {'text': 'different options and if you click in', 'start': 12095.319, 'duration': 4.16}, {'text': 'one of those options you see the entity', 'start': 12097.8, 'duration': 4.399}, {'text': 'card like this for example this is not', 'start': 12099.479, 'duration': 5.281}, {'text': 'the best view but this is the starting', 'start': 12102.199, 'duration': 5.681}, {'text': 'point I would say so you', 'start': 12104.76, 'duration': 6.8}, {'text': 'can tell us like how you redesign this', 'start': 12107.88, 'duration': 6.16}, {'text': \"or even there there there's an option\", 'start': 12111.56, 'duration': 4.6}, {'text': 'for evidence and', 'start': 12114.04, 'duration': 5.88}, {'text': 'assertion menu which you can redesign so', 'start': 12116.16, 'duration': 6.4}, {'text': \"it's up to you it doesn't have to be\", 'start': 12119.92, 'duration': 6.319}, {'text': 'just uh this view for example this is', 'start': 12122.56, 'duration': 7.24}, {'text': 'one of the view we see donors and most', 'start': 12126.239, 'duration': 6.0}, {'text': 'important thing here is these donor', 'start': 12129.8, 'duration': 5.16}, {'text': 'species and all the tissue samples that', 'start': 12132.239, 'duration': 5.0}, {'text': 'have been displayed here are they are', 'start': 12134.96, 'duration': 6.0}, {'text': 'connected to this name so this is the', 'start': 12137.239, 'duration': 5.681}, {'text': 'knowledge graph powering all those', 'start': 12140.96, 'duration': 4.319}, {'text': 'information that all those connections', 'start': 12142.92, 'duration': 4.399}, {'text': 'based on all those connections to that', 'start': 12145.279, 'duration': 4.521}, {'text': \"name ID we're able to face all those\", 'start': 12147.319, 'duration': 4.441}, {'text': 'related informations and you can', 'start': 12149.8, 'duration': 3.84}, {'text': 'navigate', 'start': 12151.76, 'duration': 4.84}, {'text': 'U uh and extract all the', 'start': 12153.64, 'duration': 5.88}, {'text': 'information so this is all uh this', 'start': 12156.6, 'duration': 6.52}, {'text': \"exercise is about and we'll do a pen and\", 'start': 12159.52, 'duration': 5.04}, {'text': 'paper', 'start': 12163.12, 'duration': 5.239}, {'text': 'exercise so d could you tell yeah you', 'start': 12164.56, 'duration': 8.24}, {'text': 'got so so the idea so you we should', 'start': 12168.359, 'duration': 6.641}, {'text': 'probably better explain what uh what', 'start': 12172.8, 'duration': 6.32}, {'text': 'kind of uh feedback', 'start': 12175.0, 'duration': 4.12}, {'text': 'you the first one if you have any', 'start': 12179.199, 'duration': 5.761}, {'text': 'feedback and how we can better organize', 'start': 12182.239, 'duration': 5.801}, {'text': 'this information um what is most', 'start': 12184.96, 'duration': 5.88}, {'text': 'important to you as a neuroscientist', 'start': 12188.04, 'duration': 4.92}, {'text': 'what do you want to see here for example', 'start': 12190.84, 'duration': 3.96}, {'text': 'if I say', 'start': 12192.96, 'duration': 4.04}, {'text': 'sources what all', 'start': 12194.8, 'duration': 4.08}, {'text': 'kind of information and how you would', 'start': 12197.0, 'duration': 4.56}, {'text': 'want it to be', 'start': 12198.88, 'duration': 2.68}, {'text': 'visualized yeah for example here if you', 'start': 12206.68, 'duration': 4.28}, {'text': 'see shortes and if you click on this', 'start': 12209.12, 'duration': 2.92}, {'text': 'link it', 'start': 12210.96, 'duration': 5.2}, {'text': 'will you can navate and use more related', 'start': 12212.04, 'duration': 7.88}, {'text': 'information and the donor for', 'start': 12216.16, 'duration': 6.319}, {'text': 'example the way that I have we have', 'start': 12219.92, 'duration': 5.2}, {'text': 'visualized here is this good enough or', 'start': 12222.479, 'duration': 5.96}, {'text': 'do you want it to be in a different', 'start': 12225.12, 'duration': 3.319}, {'text': 'so two two things over here uh first a', 'start': 12232.6, 'duration': 5.08}, {'text': 'shout out to n all of this is being', 'start': 12235.72, 'duration': 5.0}, {'text': \"pulled through their API they've done a\", 'start': 12237.68, 'duration': 4.84}, {'text': 'fantastic job of getting people to', 'start': 12240.72, 'duration': 4.519}, {'text': 'upload data into the ly portal and for', 'start': 12242.52, 'duration': 4.759}, {'text': 'us to be able to access and things and I', 'start': 12245.239, 'duration': 3.361}, {'text': 'know there are a couple of folks if you', 'start': 12247.279, 'duration': 3.601}, {'text': 'could raise your hands those who are', 'start': 12248.6, 'duration': 4.12}, {'text': 'working with the N', 'start': 12250.88, 'duration': 4.359}, {'text': 'team you know they are the ones who are', 'start': 12252.72, 'duration': 6.8}, {'text': 'helping you get all your discuss data', 'start': 12255.239, 'duration': 4.281}, {'text': 'end there are some five or four', 'start': 12261.12, 'duration': 5.6}, {'text': 'the reason I think one of the reason why', 'start': 12302.96, 'duration': 3.76}, {'text': \"you're getting the timing error is\", 'start': 12305.199, 'duration': 5.321}, {'text': 'because we using free version ofv and if', 'start': 12306.72, 'duration': 6.92}, {'text': 'you this knowledge', 'start': 12310.52, 'duration': 7.759}, {'text': 'this like very time consing and it all', 'start': 12313.64, 'duration': 7.32}, {'text': 'only two simultaneous way so if there', 'start': 12318.279, 'duration': 5.361}, {'text': 'are multiple people trying access at the', 'start': 12320.96, 'duration': 5.0}, {'text': 'same', 'start': 12323.64, 'duration': 2.32}, {'text': 'time so they should be refresh yes you', 'start': 12328.399, 'duration': 7.481}, {'text': 'should be able to refres and then it', 'start': 12332.279, 'duration': 3.601}, {'text': 'should this analogy to the Gen CS things', 'start': 12340.04, 'duration': 8.52}, {'text': 'like that but but g c Etc can kick in at', 'start': 12344.199, 'duration': 7.681}, {'text': 'a very fixed level of resolution and', 'start': 12348.56, 'duration': 5.4}, {'text': \"there's no hierarchy whatsoever to it\", 'start': 12351.88, 'duration': 4.08}, {'text': 'far so you can click different places', 'start': 12353.96, 'duration': 4.16}, {'text': 'but the information summary is', 'start': 12355.96, 'duration': 4.6}, {'text': 'effectively monolithic what is the', 'start': 12358.12, 'duration': 5.48}, {'text': 'intent of the usage of these where is it', 'start': 12360.56, 'duration': 6.12}, {'text': \"the intent that there's an entity card\", 'start': 12363.6, 'duration': 5.0}, {'text': 'can kick in at multiple resolutions or', 'start': 12366.68, 'duration': 4.84}, {'text': 'is it captured in in the entire', 'start': 12368.6, 'duration': 5.52}, {'text': 'en a little bit confused about that all', 'start': 12371.52, 'duration': 4.6}, {'text': 'right can I answer question yeah all', 'start': 12374.12, 'duration': 2.68}, {'text': 'right', 'start': 12376.12, 'duration': 3.8}, {'text': 'that well I think so let me see if I can', 'start': 12376.8, 'duration': 5.88}, {'text': 'read uh repeat the question to see if I', 'start': 12379.92, 'duration': 6.24}, {'text': 'understood your question properly uh so', 'start': 12382.68, 'duration': 5.92}, {'text': 'Gene cards which is one of the things', 'start': 12386.16, 'duration': 4.4}, {'text': 'that an entity card may have been', 'start': 12388.6, 'duration': 4.839}, {'text': 'derived from as a concept has a fixed', 'start': 12390.56, 'duration': 5.0}, {'text': \"resolution it's like there's a gene it\", 'start': 12393.439, 'duration': 3.96}, {'text': 'has different kinds of functions a', 'start': 12395.56, 'duration': 4.799}, {'text': 'million things you can see right but', 'start': 12397.399, 'duration': 5.121}, {'text': \"it's kind of fixed in there but is it\", 'start': 12400.359, 'duration': 4.441}, {'text': \"really fixed that's the question right\", 'start': 12402.52, 'duration': 5.64}, {'text': 'functions of genes and adapt over time', 'start': 12404.8, 'duration': 5.32}, {'text': 'we get', 'start': 12408.16, 'duration': 4.279}, {'text': 'different in an idealized version I', 'start': 12410.12, 'duration': 3.72}, {'text': \"completely agree with you it's not\", 'start': 12412.439, 'duration': 3.361}, {'text': \"implemented that way though sure that's\", 'start': 12413.84, 'duration': 3.84}, {'text': 'all and here we are hoping that that', 'start': 12415.8, 'duration': 4.24}, {'text': 'notion of providence is coming into this', 'start': 12417.68, 'duration': 5.16}, {'text': 'entity card that information here can', 'start': 12420.04, 'duration': 4.0}, {'text': 'change over', 'start': 12422.84, 'duration': 4.28}, {'text': 'time but is an entity supposed to be is', 'start': 12424.04, 'duration': 5.72}, {'text': 'it a is it everything that you want to', 'start': 12427.12, 'duration': 3.8}, {'text': 'know about', 'start': 12429.76, 'duration': 3.439}, {'text': \"s sorry Mike I can't hear you could you\", 'start': 12430.92, 'duration': 3.72}, {'text': 'use it m please is it everything that', 'start': 12433.199, 'duration': 3.601}, {'text': 'you would want to know about a S Type an', 'start': 12434.64, 'duration': 3.759}, {'text': 'entity or are these ENT are there', 'start': 12436.8, 'duration': 4.28}, {'text': \"multiple entities defined for that's\", 'start': 12438.399, 'duration': 3.96}, {'text': \"what I'm confused about so there are\", 'start': 12441.08, 'duration': 3.88}, {'text': 'multiple entities but I would also say', 'start': 12442.359, 'duration': 5.12}, {'text': 'that what so I would call that a view an', 'start': 12444.96, 'duration': 4.84}, {'text': \"entity card is a view that's shaped by\", 'start': 12447.479, 'duration': 4.401}, {'text': 'the person who wants that information', 'start': 12449.8, 'duration': 4.24}, {'text': 'there could be a generic view that we', 'start': 12451.88, 'duration': 4.559}, {'text': 'all decide is a good average view of an', 'start': 12454.04, 'duration': 4.52}, {'text': 'entity and that could be the starting', 'start': 12456.439, 'duration': 3.92}, {'text': 'point but maybe a scientist wants to', 'start': 12458.56, 'duration': 4.24}, {'text': 'come and say when I view species I', 'start': 12460.359, 'duration': 5.521}, {'text': \"really care about CCS I don't really\", 'start': 12462.8, 'duration': 5.8}, {'text': 'care about genome references here and so', 'start': 12465.88, 'duration': 4.88}, {'text': 'they could Define The View around brain', 'start': 12468.6, 'duration': 6.2}, {'text': 'regions Forest species the ccfs uh the', 'start': 12470.76, 'duration': 5.88}, {'text': \"related data around it and that's what\", 'start': 12474.8, 'duration': 4.12}, {'text': 'we are hoping that the future of that', 'start': 12476.64, 'duration': 4.4}, {'text': \"entity card becomes is it's a\", 'start': 12478.92, 'duration': 5.479}, {'text': \"customizable view of an entity that's\", 'start': 12481.04, 'duration': 5.359}, {'text': 'relevant to an individual seeking', 'start': 12484.399, 'duration': 4.241}, {'text': \"information the closest example I'll\", 'start': 12486.399, 'duration': 4.0}, {'text': 'give is if you go to Google Search I', 'start': 12488.64, 'duration': 3.719}, {'text': 'know we all talk about Al but if you', 'start': 12490.399, 'duration': 3.96}, {'text': 'type in anything one of the things that', 'start': 12492.359, 'duration': 5.12}, {'text': 'points out on the right is a panel', 'start': 12494.359, 'duration': 5.0}, {'text': 'of information about The', 'start': 12497.479, 'duration': 5.241}, {'text': 'Entity and that view is', 'start': 12499.359, 'duration': 5.481}, {'text': \"customized there's a generic vertion and\", 'start': 12502.72, 'duration': 3.84}, {'text': \"it's customized for an individual based\", 'start': 12504.84, 'duration': 3.08}, {'text': \"on their history of what they're looking\", 'start': 12506.56, 'duration': 4.839}, {'text': 'for in that panel we want that to exist', 'start': 12507.92, 'duration': 5.72}, {'text': 'for all these neuroscientific entities', 'start': 12511.399, 'duration': 4.721}, {'text': 'at some level when we get to', 'start': 12513.64, 'duration': 5.719}, {'text': 'it does it answer your question mik I', 'start': 12516.12, 'duration': 4.88}, {'text': 'think really is is going to add', 'start': 12519.359, 'duration': 4.12}, {'text': 'something okay no I think you you got to', 'start': 12521.0, 'duration': 7.239}, {'text': 'it that every entity should have a page', 'start': 12523.479, 'duration': 7.481}, {'text': 'some entities are going to have like', 'start': 12528.239, 'duration': 6.561}, {'text': 'really basic pages that some entities', 'start': 12530.96, 'duration': 5.84}, {'text': 'the one the major ones that we going to', 'start': 12534.8, 'duration': 4.12}, {'text': \"care about the most we're going to spend\", 'start': 12536.8, 'duration': 4.479}, {'text': \"time crafting that view because that's\", 'start': 12538.92, 'duration': 5.08}, {'text': 'where people so give me an example of', 'start': 12541.279, 'duration': 4.521}, {'text': \"give me an example the ones that we're\", 'start': 12544.0, 'duration': 3.64}, {'text': 'going to highly craft are your cell', 'start': 12545.8, 'duration': 5.679}, {'text': 'types your CCF your structures so highly', 'start': 12547.64, 'duration': 5.36}, {'text': 'profited of all the link that you want', 'start': 12551.479, 'duration': 5.441}, {'text': 'to go to your atlases your atlases maybe', 'start': 12553.0, 'duration': 7.359}, {'text': 'maybe uh a gene is', 'start': 12556.92, 'duration': 5.88}, {'text': 'less your Gene you might want to go', 'start': 12560.359, 'duration': 4.441}, {'text': 'different things so there are certain', 'start': 12562.8, 'duration': 5.84}, {'text': 'key ones maybe your name you might just', 'start': 12564.8, 'duration': 5.84}, {'text': 'have a generic thing of this is your', 'start': 12568.64, 'duration': 4.88}, {'text': 'orite maybe going to a whole profile on', 'start': 12570.64, 'duration': 6.32}, {'text': 'people but those the things like at cell', 'start': 12573.52, 'duration': 6.52}, {'text': 'will have those', 'start': 12576.96, 'duration': 3.08}, {'text': 'views so so in your view um how static', 'start': 12580.239, 'duration': 8.281}, {'text': 'these and cards are they will they', 'start': 12585.479, 'duration': 5.681}, {'text': 'change or once you Define entity they', 'start': 12588.52, 'duration': 5.879}, {'text': \"remain the same I think they're Dynamic\", 'start': 12591.16, 'duration': 4.8}, {'text': 'uh and their Dynamic based on the', 'start': 12594.399, 'duration': 3.521}, {'text': \"provence of that entity so I'm using the\", 'start': 12595.96, 'duration': 3.96}, {'text': 'word entity as a very generic term right', 'start': 12597.92, 'duration': 3.96}, {'text': 'so we could be specific about a self Ty', 'start': 12599.92, 'duration': 5.0}, {'text': \"let's take a cell type a cell type today\", 'start': 12601.88, 'duration': 6.28}, {'text': 'is based on a very specific cence chain', 'start': 12604.92, 'duration': 5.92}, {'text': 'around some data some processing some', 'start': 12608.16, 'duration': 5.44}, {'text': 'analysis that then relates to this as a', 'start': 12610.84, 'duration': 4.439}, {'text': 'cell Ty and this is what we are', 'start': 12613.6, 'duration': 3.44}, {'text': 'interested in right how consistent is', 'start': 12615.279, 'duration': 4.521}, {'text': 'that cell type over time if new data', 'start': 12617.04, 'duration': 5.359}, {'text': 'sets come about does it impact that cell', 'start': 12619.8, 'duration': 5.04}, {'text': 'type would we want that kind of', 'start': 12622.399, 'duration': 5.401}, {'text': 'information to exist alongside that cell', 'start': 12624.84, 'duration': 5.88}, {'text': 'type card as an example right and I', 'start': 12627.8, 'duration': 4.559}, {'text': 'would say from a scientific perspective', 'start': 12630.72, 'duration': 4.4}, {'text': 'we want to know that right a there have', 'start': 12632.359, 'duration': 4.721}, {'text': 'been questions even in conversations', 'start': 12635.12, 'duration': 4.359}, {'text': 'here does the s same cell tap exist', 'start': 12637.08, 'duration': 4.72}, {'text': 'between two sets of analysis that have', 'start': 12639.479, 'duration': 4.121}, {'text': 'been done on', 'start': 12641.8, 'duration': 5.679}, {'text': 'data so I would say that I see it as', 'start': 12643.6, 'duration': 5.48}, {'text': 'there are certain parts of it which are', 'start': 12647.479, 'duration': 3.441}, {'text': 'going to be static and there are certain', 'start': 12649.08, 'duration': 3.72}, {'text': 'parts of it are going to be dynamic', 'start': 12650.92, 'duration': 3.8}, {'text': 'because of scientific investigation on', 'start': 12652.8, 'duration': 5.2}, {'text': 'that entity so if I think about in', 'start': 12654.72, 'duration': 5.96}, {'text': 'general about the classic knowledge gra', 'start': 12658.0, 'duration': 5.279}, {'text': 'so you have entities and relationships', 'start': 12660.68, 'duration': 5.2}, {'text': 'so entities could be anything right', 'start': 12663.279, 'duration': 5.561}, {'text': 'names whatever that may be and and the', 'start': 12665.88, 'duration': 4.64}, {'text': 'relationships the relationships', 'start': 12668.84, 'duration': 4.0}, {'text': 'typically evolve in a knowledge graft', 'start': 12670.52, 'duration': 5.04}, {'text': 'right and the more entities get added so', 'start': 12672.84, 'duration': 5.439}, {'text': \"you're the same thing right I would add\", 'start': 12675.56, 'duration': 5.4}, {'text': 'one more component to it confence so a', 'start': 12678.279, 'duration': 5.521}, {'text': 'lot of knowledge grafts ignore', 'start': 12680.96, 'duration': 5.68}, {'text': 'time and time is essential in the', 'start': 12683.8, 'duration': 5.679}, {'text': 'context of construction of knowledge in', 'start': 12686.64, 'duration': 4.839}, {'text': 'neuroscience and that is where the', 'start': 12689.479, 'duration': 5.321}, {'text': 'dynamism kind of comes yeah but I think', 'start': 12691.479, 'duration': 5.0}, {'text': 'depending your relationship could be a', 'start': 12694.8, 'duration': 3.16}, {'text': 'time relationship right if you think', 'start': 12696.479, 'duration': 3.481}, {'text': 'about property graphs right so you', 'start': 12697.96, 'duration': 5.04}, {'text': 'assign properties to whatever either you', 'start': 12699.96, 'duration': 7.399}, {'text': 'property to entity or the link so so so', 'start': 12703.0, 'duration': 6.72}, {'text': 'to your view that these things will', 'start': 12707.359, 'duration': 6.08}, {'text': 'change over time as in we allow for the', 'start': 12709.72, 'duration': 5.8}, {'text': 'possibility of change whether the change', 'start': 12713.439, 'duration': 5.401}, {'text': 'is dependent on scientific investigation', 'start': 12715.52, 'duration': 6.44}, {'text': 'okay can', 'start': 12718.84, 'duration': 3.12}, {'text': 'I', 'start': 12726.72, 'duration': 4.679}, {'text': 'so onology and like knowledge gra', 'start': 12728.8, 'duration': 4.12}, {'text': 'building perspective we make a', 'start': 12731.399, 'duration': 4.561}, {'text': 'distinction typically between', 'start': 12732.92, 'duration': 5.319}, {'text': 'very abstract like a concept of a cell', 'start': 12735.96, 'duration': 5.439}, {'text': \"type so let's get out of some newly\", 'start': 12738.239, 'duration': 6.521}, {'text': 'discovered brain cell type num people', 'start': 12741.399, 'duration': 6.84}, {'text': 'have been looking at typ pites for for', 'start': 12744.76, 'duration': 5.599}, {'text': 'decades we know about the ultra', 'start': 12748.239, 'duration': 4.641}, {'text': 'structure of them we know we know lots', 'start': 12750.359, 'duration': 5.04}, {'text': \"about their function and there's lots of\", 'start': 12752.88, 'duration': 4.439}, {'text': \"this 3D image data there's all sorts of\", 'start': 12755.399, 'duration': 4.761}, {'text': 'stuff you can tie there to the general', 'start': 12757.319, 'duration': 5.561}, {'text': 'knowledge of the cell type which is not', 'start': 12760.16, 'duration': 6.079}, {'text': \"we've defined it in this one data set um\", 'start': 12762.88, 'duration': 5.439}, {'text': 'so it seems to me we need to make a bit', 'start': 12766.239, 'duration': 5.24}, {'text': 'of a distinction here between the', 'start': 12768.319, 'duration': 5.96}, {'text': 'general uh you know General description', 'start': 12771.479, 'duration': 4.481}, {'text': \"of information about cell that's more\", 'start': 12774.279, 'duration': 3.561}, {'text': \"like Gene cards here's a general\", 'start': 12775.96, 'duration': 3.279}, {'text': 'description of information which can', 'start': 12777.84, 'duration': 3.76}, {'text': 'dynamically update about a particular', 'start': 12779.239, 'duration': 5.24}, {'text': \"Gene as we as we know more but it's not\", 'start': 12781.6, 'duration': 6.599}, {'text': 'tied to one data set now we have a', 'start': 12784.479, 'duration': 5.84}, {'text': 'different thing going on here in the', 'start': 12788.199, 'duration': 4.12}, {'text': \"part of what Bon's doing is defining\", 'start': 12790.319, 'duration': 4.241}, {'text': 'these cell types by tying them to to', 'start': 12792.319, 'duration': 5.361}, {'text': 'specific data set evolves over time but', 'start': 12794.56, 'duration': 4.879}, {'text': 'I would say there is also a general', 'start': 12797.68, 'duration': 4.4}, {'text': 'concept of a cell type here so you know', 'start': 12799.439, 'duration': 5.161}, {'text': \"I've been talking with Nelson about\", 'start': 12802.08, 'duration': 5.319}, {'text': 'working on um Curative descriptions and', 'start': 12804.6, 'duration': 4.28}, {'text': 'with general knowledge about the cell', 'start': 12807.399, 'duration': 4.481}, {'text': 'types in the basil gangling um so Nelson', 'start': 12808.88, 'duration': 4.24}, {'text': 'and our leader are going to work', 'start': 12811.88, 'duration': 2.559}, {'text': 'together on that looking at some of the', 'start': 12813.12, 'duration': 3.76}, {'text': 'llm outputs and working with the', 'start': 12814.439, 'duration': 4.081}, {'text': 'literature to come up with those', 'start': 12816.88, 'duration': 3.64}, {'text': \"descriptions and we're actually working\", 'start': 12818.52, 'duration': 4.08}, {'text': 'actively with cell by Gene to come up', 'start': 12820.52, 'duration': 3.759}, {'text': 'with those kinds of General descriptions', 'start': 12822.6, 'duration': 4.24}, {'text': 'they also fit with sort of ology model', 'start': 12824.279, 'duration': 4.721}, {'text': 'so I just wonder about how', 'start': 12826.84, 'duration': 4.92}, {'text': 'that how would you make that distinction', 'start': 12829.0, 'duration': 4.399}, {'text': \"in what you're building the distinction\", 'start': 12831.76, 'duration': 3.92}, {'text': \"of here's something tipes to a specific\", 'start': 12833.399, 'duration': 3.88}, {'text': \"data set where we've got all the\", 'start': 12835.68, 'duration': 3.24}, {'text': 'descriptions of how that data set was', 'start': 12837.279, 'duration': 3.481}, {'text': 'generated how it was annotated all the', 'start': 12838.92, 'duration': 3.399}, {'text': 'evidence that these particular cell', 'start': 12840.76, 'duration': 3.96}, {'text': 'types and Provence chains of these', 'start': 12842.319, 'duration': 4.16}, {'text': 'particular cell types in present versus', 'start': 12844.72, 'duration': 4.479}, {'text': \"this more abstract there's a general\", 'start': 12846.479, 'duration': 6.401}, {'text': 'description you know direct pathway msms', 'start': 12849.199, 'duration': 6.2}, {'text': \"which we've known about for decades so\", 'start': 12852.88, 'duration': 4.92}, {'text': 'this is where that break happens of', 'start': 12855.399, 'duration': 5.201}, {'text': 'information based on existing knowledge', 'start': 12857.8, 'duration': 7.599}, {'text': \"Publications people's heads uh and we\", 'start': 12860.6, 'duration': 7.04}, {'text': \"would represent that right that's still\", 'start': 12865.399, 'duration': 5.04}, {'text': \"an entity created by some process it's\", 'start': 12867.64, 'duration': 4.28}, {'text': \"just that it doesn't drill all the way\", 'start': 12870.439, 'duration': 3.96}, {'text': \"down to data right and that's still an\", 'start': 12871.92, 'duration': 5.24}, {'text': 'entity in this space uh when you say', 'start': 12874.399, 'duration': 4.721}, {'text': 'this entity is related to this entity', 'start': 12877.16, 'duration': 4.48}, {'text': \"that relation connection is what's going\", 'start': 12879.12, 'duration': 7.279}, {'text': 'to be in that uh in the knowledge graph', 'start': 12881.64, 'duration': 7.96}, {'text': 'as who did it who said this cell type', 'start': 12886.399, 'duration': 5.121}, {'text': \"that you're getting from theature the\", 'start': 12889.6, 'duration': 5.04}, {'text': \"more generic cell type of I don't know a\", 'start': 12891.52, 'duration': 5.2}, {'text': \"PV cell there's lots of knowledge about\", 'start': 12894.64, 'duration': 4.839}, {'text': 'a PV cell that exists and so we should', 'start': 12896.72, 'duration': 5.16}, {'text': 'be able to encode that a lot of that', 'start': 12899.479, 'duration': 4.561}, {'text': 'knowledge is in published literature and', 'start': 12901.88, 'duration': 4.92}, {'text': \"in people's heads but now that we have\", 'start': 12904.04, 'duration': 5.52}, {'text': 'data py data and other things we can', 'start': 12906.8, 'duration': 5.72}, {'text': 'relate or verify so ideally I want to', 'start': 12909.56, 'duration': 5.56}, {'text': 'see a continuous integration system like', 'start': 12912.52, 'duration': 4.799}, {'text': 'we do in software but around this', 'start': 12915.12, 'duration': 3.84}, {'text': 'knowledge space and it does not have to', 'start': 12917.319, 'duration': 5.16}, {'text': 'rely on One Source versus another all of', 'start': 12918.96, 'duration': 5.64}, {'text': 'that can be represented we just want a', 'start': 12922.479, 'duration': 4.681}, {'text': 'Reconciliation process to come about in', 'start': 12924.6, 'duration': 4.36}, {'text': 'the future that says hey all those', 'start': 12927.16, 'duration': 3.52}, {'text': 'things that you knew about the PV cell', 'start': 12928.96, 'duration': 3.96}, {'text': 'type were only specific to this', 'start': 12930.68, 'duration': 4.36}, {'text': 'particular genotype of a mouse in this', 'start': 12932.92, 'duration': 3.68}, {'text': 'particular region of the brain because', 'start': 12935.04, 'duration': 4.12}, {'text': \"that's where all of that data came from\", 'start': 12936.6, 'duration': 4.639}, {'text': \"right today we might say there's\", 'start': 12939.16, 'duration': 4.079}, {'text': 'disagreement or this new data comes', 'start': 12941.239, 'duration': 4.761}, {'text': 'along and says I completely support that', 'start': 12943.239, 'duration': 4.721}, {'text': 'description of the cell type that you', 'start': 12946.0, 'duration': 4.88}, {'text': 'found there because all of this data', 'start': 12947.96, 'duration': 5.72}, {'text': 'also supports it so I I see this as not', 'start': 12950.88, 'duration': 5.399}, {'text': 'an either or but both should be', 'start': 12953.68, 'duration': 4.84}, {'text': 'represented because they bring different', 'start': 12956.279, 'duration': 6.12}, {'text': 'facets of knowledge into the', 'start': 12958.52, 'duration': 7.12}, {'text': 'graph I think you see this as sort of', 'start': 12962.399, 'duration': 5.241}, {'text': \"like moving forward in time we're going\", 'start': 12965.64, 'duration': 6.16}, {'text': 'to come to some improved consensus um', 'start': 12967.64, 'duration': 6.719}, {'text': 'but what about situations where it there', 'start': 12971.8, 'duration': 4.76}, {'text': \"NE isn't necessarily right answer let's\", 'start': 12974.359, 'duration': 4.721}, {'text': 'say you got this LA on your math and you', 'start': 12976.56, 'duration': 4.24}, {'text': 'know you set these', 'start': 12979.08, 'duration': 4.399}, {'text': 'thresholds you cut these clusters and', 'start': 12980.8, 'duration': 5.32}, {'text': 'then somebody else Cuts The Blob up in a', 'start': 12983.479, 'duration': 5.8}, {'text': 'different way gives different names and', 'start': 12986.12, 'duration': 5.92}, {'text': 'you know most of this blob goes to that', 'start': 12989.279, 'duration': 4.521}, {'text': 'blob but some of it goes to the other', 'start': 12992.04, 'duration': 3.68}, {'text': \"blob like I don't feel like there's like\", 'start': 12993.8, 'duration': 6.559}, {'text': 'a right answer there and so how do you', 'start': 12995.72, 'duration': 6.759}, {'text': \"Rec yeah I don't think the knowledge\", 'start': 13000.359, 'duration': 5.281}, {'text': \"graph is about right it's about that\", 'start': 13002.479, 'duration': 5.041}, {'text': 'information that you just described I', 'start': 13005.64, 'duration': 4.2}, {'text': 'want to be able to represent that two', 'start': 13007.52, 'duration': 4.919}, {'text': 'people came along and looked at the same', 'start': 13009.84, 'duration': 4.559}, {'text': 'thing and interpreted it through two', 'start': 13012.439, 'duration': 5.081}, {'text': 'different lenses now that could allow', 'start': 13014.399, 'duration': 5.8}, {'text': 'for a Reconciliation of those lenses or', 'start': 13017.52, 'duration': 4.4}, {'text': 'simply represent that we have two', 'start': 13020.199, 'duration': 6.0}, {'text': 'different views translation', 'start': 13021.92, 'duration': 4.279}, {'text': 'yeah along that line we the power is', 'start': 13026.279, 'duration': 6.2}, {'text': 'what goes on with anatomical', 'start': 13030.239, 'duration': 6.521}, {'text': 'appes uh animous argue all the time', 'start': 13032.479, 'duration': 6.521}, {'text': 'uh but one thing that happened in the', 'start': 13036.76, 'duration': 4.24}, {'text': \"past is then when I draw a new atlet I'm\", 'start': 13039.0, 'duration': 4.52}, {'text': 'going draw on a different brain and it', 'start': 13041.0, 'duration': 4.92}, {'text': 'was really difficult to tell if there', 'start': 13043.52, 'duration': 5.44}, {'text': 'was a difference in that cut of that', 'start': 13045.92, 'duration': 5.84}, {'text': 'brain or there was actually a difference', 'start': 13048.96, 'duration': 4.519}, {'text': 'in the', 'start': 13051.76, 'duration': 4.16}, {'text': 'interpretation so right now we would', 'start': 13053.479, 'duration': 4.241}, {'text': 'love it even if you just drew on the', 'start': 13055.92, 'duration': 4.399}, {'text': 'same brain like you can have different', 'start': 13057.72, 'duration': 5.04}, {'text': \"interpretation because you you're pting\", 'start': 13060.319, 'duration': 4.561}, {'text': 'the schema in a different way but we', 'start': 13062.76, 'duration': 3.519}, {'text': 'really would like you to draw on the', 'start': 13064.88, 'duration': 4.0}, {'text': 'same brain so that we can tell so even', 'start': 13066.279, 'duration': 4.761}, {'text': \"if you disagree if you hav't in same\", 'start': 13068.88, 'duration': 4.12}, {'text': 'Knowledge Graph at least we know where', 'start': 13071.04, 'duration': 5.319}, {'text': \"you're disagreeing right so that\", 'start': 13073.0, 'duration': 6.76}, {'text': 'versus and then then people can either', 'start': 13076.359, 'duration': 5.84}, {'text': 'do a third party thing we would love it', 'start': 13079.76, 'duration': 4.96}, {'text': 'when two things disagree and then', 'start': 13082.199, 'duration': 5.08}, {'text': 'someone would come to do additional work', 'start': 13084.72, 'duration': 5.08}, {'text': \"to go one way or another we say they're\", 'start': 13087.279, 'duration': 5.361}, {'text': 'both wrong but then all of that in a', 'start': 13089.8, 'duration': 4.72}, {'text': 'central place the problem is that you', 'start': 13092.64, 'duration': 4.88}, {'text': \"don't even know who how many people have\", 'start': 13094.52, 'duration': 6.0}, {'text': 'said different things about this area', 'start': 13097.52, 'duration': 5.0}, {'text': \"and that's the bit that we H just off\", 'start': 13100.52, 'duration': 4.16}, {'text': 'not the not have get to the disagreement', 'start': 13102.52, 'duration': 4.4}, {'text': 'the fact that there is a disagreement', 'start': 13104.68, 'duration': 6.599}, {'text': \"here it be we that that's a good F ready\", 'start': 13106.92, 'duration': 7.439}, {'text': \"I think it's also useful I mean I think\", 'start': 13111.279, 'duration': 6.441}, {'text': \"it's good to have both that multiplicity\", 'start': 13114.359, 'duration': 6.161}, {'text': 'but also to have like a standard because', 'start': 13117.72, 'duration': 4.44}, {'text': 'um ultimately like you can get really', 'start': 13120.52, 'duration': 3.48}, {'text': \"confusing for people you're like oh this\", 'start': 13122.16, 'duration': 5.159}, {'text': \"is this cell type and this but it's like\", 'start': 13124.0, 'duration': 5.8}, {'text': 'cluster number 19 in this other Atlas', 'start': 13127.319, 'duration': 4.801}, {'text': \"and it's you know like it's hard for our\", 'start': 13129.8, 'duration': 5.639}, {'text': 'heads to like hang something on it so I', 'start': 13132.12, 'duration': 6.88}, {'text': \"think there's both a standardization and\", 'start': 13135.439, 'duration': 7.361}, {'text': 'the room for you know this is different', 'start': 13139.0, 'duration': 5.72}, {'text': \"it's looking species different it's\", 'start': 13142.8, 'duration': 5.36}, {'text': 'looking regions this is whole bra so', 'start': 13144.72, 'duration': 5.639}, {'text': \"it's have a different\", 'start': 13148.16, 'duration': 4.52}, {'text': 'resolution our job is to show the', 'start': 13150.359, 'duration': 5.12}, {'text': 'differences to people and hopefully that', 'start': 13152.68, 'duration': 6.2}, {'text': 'will pun we shame people to do a', 'start': 13155.479, 'duration': 4.8}, {'text': \"standard because that's a different\", 'start': 13158.88, 'duration': 3.559}, {'text': 'group right we are not going to say', 'start': 13160.279, 'duration': 3.881}, {'text': \"who's right we really want people to\", 'start': 13162.439, 'duration': 4.121}, {'text': 'collaborate to come up with something so', 'start': 13164.16, 'duration': 5.48}, {'text': 'this is where that particular question', 'start': 13166.56, 'duration': 5.719}, {'text': \"now unify it there's a bigger group of\", 'start': 13169.64, 'duration': 5.28}, {'text': 'people we have to make that ple too but', 'start': 13172.279, 'duration': 4.881}, {'text': 'we are going to show you all the places', 'start': 13174.92, 'duration': 3.76}, {'text': 'where that unification might need to', 'start': 13177.16, 'duration': 4.52}, {'text': 'happen', 'start': 13178.68, 'duration': 3.0}, {'text': 'so I just want to follow what my ask', 'start': 13186.16, 'duration': 5.72}, {'text': \"about gen card right I mean it's all\", 'start': 13189.439, 'duration': 4.76}, {'text': 'about the SC like you know for', 'start': 13191.88, 'duration': 3.96}, {'text': 'individual genus you have all that', 'start': 13194.199, 'duration': 3.441}, {'text': 'information but it', 'start': 13195.84, 'duration': 4.28}, {'text': 'is in the scope of for example', 'start': 13197.64, 'duration': 4.559}, {'text': 'biological process then you understand', 'start': 13200.12, 'duration': 5.159}, {'text': 'how genes are related right so here if', 'start': 13202.199, 'duration': 7.24}, {'text': 'we say okay only sequence cells then all', 'start': 13205.279, 'duration': 6.92}, {'text': 'we do is okay this Gene these cells they', 'start': 13209.439, 'duration': 4.561}, {'text': 'have the similar gene expression so we', 'start': 13212.199, 'duration': 3.681}, {'text': 'class them together', 'start': 13214.0, 'duration': 3.8}, {'text': \"that's like Association right it's not\", 'start': 13215.88, 'duration': 5.399}, {'text': 'like a cation or other interactions so', 'start': 13217.8, 'duration': 5.32}, {'text': 'it is under the scope say Okay want to', 'start': 13221.279, 'duration': 4.321}, {'text': 'study how you know this cell and that', 'start': 13223.12, 'duration': 5.0}, {'text': \"cell in what context maybe it's spatial\", 'start': 13225.6, 'duration': 5.16}, {'text': 'or maybe development process or maybe', 'start': 13228.12, 'duration': 5.48}, {'text': \"you know the disease context then that's\", 'start': 13230.76, 'duration': 4.76}, {'text': 'where you see the connection between', 'start': 13233.6, 'duration': 4.4}, {'text': 'cell types and other things so I think', 'start': 13235.52, 'duration': 5.36}, {'text': \"you know it's really the right SP I I I\", 'start': 13238.0, 'duration': 4.319}, {'text': 'know there are people wanting to ask', 'start': 13240.88, 'duration': 4.08}, {'text': 'questions and discuss can I use what was', 'start': 13242.319, 'duration': 5.16}, {'text': 'said just now to do one exercise for', 'start': 13244.96, 'duration': 6.16}, {'text': 'five minutes before we we do this so', 'start': 13247.479, 'duration': 6.121}, {'text': 'this exercise self type everybody is', 'start': 13251.12, 'duration': 4.6}, {'text': 'there anybody on the table who does not', 'start': 13253.6, 'duration': 4.04}, {'text': 'know what a self type is and has never', 'start': 13255.72, 'duration': 4.679}, {'text': 'heard that word let me rep question is', 'start': 13257.64, 'duration': 5.559}, {'text': 'there anyone who', 'start': 13260.399, 'duration': 2.8}, {'text': 'does all', 'start': 13266.359, 'duration': 4.88}, {'text': 'right I want you to take just the cell', 'start': 13268.359, 'duration': 6.161}, {'text': 'type entity and think about what you', 'start': 13271.239, 'duration': 8.04}, {'text': 'would want to put on one piece of paper', 'start': 13274.52, 'duration': 8.04}, {'text': 'and if you need more paper', 'start': 13279.279, 'duration': 7.0}, {'text': 'I uh so five minutes for all the things', 'start': 13282.56, 'duration': 6.96}, {'text': 'about as cell type that you would like', 'start': 13286.279, 'duration': 5.441}, {'text': \"to see in a card and I know there's a\", 'start': 13289.52, 'duration': 3.719}, {'text': \"cell type Explorer I'm not going to pull\", 'start': 13291.72, 'duration': 2.639}, {'text': 'it up', 'start': 13293.239, 'duration': 5.481}, {'text': 'to give you prior I want you to think', 'start': 13294.359, 'duration': 9.321}, {'text': 'about trying to actually Define the self', 'start': 13298.72, 'duration': 4.96}, {'text': 'the real', 'start': 13310.08, 'duration': 2.399}, {'text': 'estate we will let you work tries and', 'start': 13318.64, 'duration': 7.92}, {'text': \"then we'll come back\", 'start': 13322.399, 'duration': 4.161}, {'text': \"don't\", 'start': 13347.52, 'duration': 3.0}, {'text': 'no', 'start': 13365.399, 'duration': 3.0}, {'text': \"that's\", 'start': 13417.68, 'duration': 3.0}, {'text': 'VAR', 'start': 13436.76, 'duration': 3.0}, {'text': \"I'm\", 'start': 13464.92, 'duration': 3.0}, {'text': \"that's\", 'start': 13486.8, 'duration': 3.0}, {'text': 'but', 'start': 13518.52, 'duration': 3.0}, {'text': 'oh yeah', 'start': 13549.8, 'duration': 3.16}, {'text': 'think', 'start': 13594.64, 'duration': 3.0}, {'text': 'seems', 'start': 13633.239, 'duration': 3.0}, {'text': 'cards', 'start': 13664.52, 'duration': 2.32}, {'text': \"you're\", 'start': 13683.399, 'duration': 3.0}, {'text': 'cons', 'start': 13706.72, 'duration': 3.0}, {'text': 'something', 'start': 13741.56, 'duration': 3.0}, {'text': 'guys', 'start': 13755.6, 'duration': 3.0}, {'text': 'no', 'start': 13811.84, 'duration': 3.0}, {'text': 'people', 'start': 13844.8, 'duration': 3.0}, {'text': 'ask for', 'start': 13890.84, 'duration': 2.519}, {'text': 'something hope you got', 'start': 13895.0, 'duration': 4.92}, {'text': 'your', 'start': 13898.0, 'duration': 5.72}, {'text': \"ready okay all right I'm going to go\", 'start': 13899.92, 'duration': 6.16}, {'text': \"around table by table and I'm going to\", 'start': 13903.72, 'duration': 4.32}, {'text': 'stand there as that', 'start': 13906.08, 'duration': 5.96}, {'text': 'white I want you to tell me the top two', 'start': 13908.04, 'duration': 7.84}, {'text': 'features in your list not more than two', 'start': 13912.04, 'duration': 6.92}, {'text': 'the top two features in your list and', 'start': 13915.88, 'duration': 7.559}, {'text': \"we'll collect all those cards by the\", 'start': 13918.96, 'duration': 4.479}, {'text': 'you', 'start': 13959.479, 'duration': 3.0}, {'text': 'your game and this is your house so I so', 'start': 13988.399, 'duration': 5.601}, {'text': \"much say so much but but I'm worried me\", 'start': 13991.88, 'duration': 4.72}, {'text': 'a little bit is that if everybody says', 'start': 13994.0, 'duration': 5.72}, {'text': \"transcrip you're only going to get one\", 'start': 13996.6, 'duration': 5.679}, {'text': \"feature extra feature and I'm wondering\", 'start': 13999.72, 'duration': 5.32}, {'text': 'is there any slight modification of your', 'start': 14002.279, 'duration': 6.441}, {'text': 'game that might give us a little more', 'start': 14005.04, 'duration': 6.0}, {'text': 'information and you can say no because', 'start': 14008.72, 'duration': 3.599}, {'text': 'this is your game I was going to say', 'start': 14011.04, 'duration': 5.04}, {'text': \"house rules but uh I'm going to say you\", 'start': 14012.319, 'duration': 5.281}, {'text': \"already bias somebody so I'm going to\", 'start': 14016.08, 'duration': 3.44}, {'text': 'take that as your top feature to start', 'start': 14017.6, 'duration': 5.32}, {'text': \"with oh and I'm going to modify the game\", 'start': 14019.52, 'duration': 5.799}, {'text': 'to say if your feature is listed you can', 'start': 14022.92, 'duration': 5.399}, {'text': \"say it's already there and add one only\", 'start': 14025.319, 'duration': 6.16}, {'text': 'one not two only one you lose', 'start': 14028.319, 'duration': 7.601}, {'text': 'one I was worried everyone was G to say', 'start': 14031.479, 'duration': 4.441}, {'text': 'that okay', 'start': 14038.359, 'duration': 5.96}, {'text': 'table', 'start': 14041.319, 'duration': 3.0}, {'text': \"don't I think two okay region\", 'start': 14046.96, 'duration': 8.72}, {'text': \"slash oh it has so I feel like I'm\", 'start': 14051.8, 'duration': 7.679}, {'text': 'cheating CCF', 'start': 14055.68, 'duration': 3.799}, {'text': \"distribtion don't thinkology I'm put\", 'start': 14065.399, 'duration': 4.76}, {'text': 'morphology', 'start': 14068.84, 'duration': 5.559}, {'text': 'here okay Morey', 'start': 14070.159, 'duration': 4.24}, {'text': 'okay and you can say your name', 'start': 14080.72, 'duration': 4.759}, {'text': 'no you can say two unless your top', 'start': 14085.84, 'duration': 6.439}, {'text': 'element or top two elements are in here', 'start': 14089.08, 'duration': 6.6}, {'text': 'already then you can say', 'start': 14092.279, 'duration': 6.96}, {'text': 'one okay this is from', 'start': 14095.68, 'duration': 7.32}, {'text': 'the and', 'start': 14099.239, 'duration': 3.761}, {'text': 'my yes and the second one', 'start': 14113.12, 'duration': 7.359}, {'text': 'is', 'start': 14117.479, 'duration': 3.0}, {'text': \"I'm is parent C name\", 'start': 14122.56, 'duration': 9.919}, {'text': 'is okay parent cell Ty so some kind', 'start': 14126.08, 'duration': 6.399}, {'text': \"of we didn't discuss say what I think\", 'start': 14141.0, 'duration': 6.0}, {'text': 'important sorry about so uh first about', 'start': 14147.56, 'duration': 7.44}, {'text': 'the marketing I would I would just say', 'start': 14151.8, 'duration': 5.88}, {'text': 'gen extion pattern because I think', 'start': 14155.0, 'duration': 6.68}, {'text': 'marking is more you add some you know a', 'start': 14157.68, 'duration': 7.12}, {'text': 'subjective opinion on it right when you', 'start': 14161.68, 'duration': 6.2}, {'text': 'say select marking who knows maybe you', 'start': 14164.8, 'duration': 6.399}, {'text': 'know in the future the gene that Express', 'start': 14167.88, 'duration': 5.92}, {'text': 'th your list very th your list might be', 'start': 14171.199, 'duration': 5.401}, {'text': 'important to Define that cell type so I', 'start': 14173.8, 'duration': 5.24}, {'text': 'I would be more sort of a general scope', 'start': 14176.6, 'duration': 5.12}, {'text': \"of gen sping pattern so that's one thing\", 'start': 14179.04, 'duration': 4.52}, {'text': 'the other thing about the parent cell', 'start': 14181.72, 'duration': 6.479}, {'text': \"type I would just say it's a a a cell\", 'start': 14183.56, 'duration': 7.52}, {'text': 'with regard to time so that include the', 'start': 14188.199, 'duration': 7.561}, {'text': 'cell life cycle as well as development', 'start': 14191.08, 'duration': 6.88}, {'text': 'that sounds different from', 'start': 14195.76, 'duration': 5.0}, {'text': 'this so', 'start': 14197.96, 'duration': 6.399}, {'text': 'cycle yeah so like you know this the', 'start': 14200.76, 'duration': 7.12}, {'text': 'sell go through the life cycle you know', 'start': 14204.359, 'duration': 6.521}, {'text': 'from', 'start': 14207.88, 'duration': 3.0}, {'text': 'the and also the development so I will', 'start': 14211.12, 'duration': 5.88}, {'text': 'put development so', 'start': 14215.159, 'duration': 6.32}, {'text': 'timeline yeah in the time', 'start': 14217.0, 'duration': 4.479}, {'text': 'a okay', 'start': 14227.399, 'duration': 4.0}, {'text': 'I just add replicability or you knowes', 'start': 14239.279, 'duration': 5.561}, {'text': 'it replicate another', 'start': 14241.72, 'duration': 5.2}, {'text': \"multiple since that's very important to\", 'start': 14244.84, 'duration': 5.08}, {'text': \"me I'll just put it up\", 'start': 14246.92, 'duration': 3.0}, {'text': 'here all right not to keep everybody do', 'start': 14251.84, 'duration': 7.84}, {'text': 'we have joint variability of neurons and', 'start': 14255.04, 'duration': 8.08}, {'text': \"ases so that's\", 'start': 14259.68, 'duration': 6.4}, {'text': 'something in a given region for example', 'start': 14263.12, 'duration': 5.8}, {'text': 'you find joint Caril these cells and', 'start': 14266.08, 'duration': 6.239}, {'text': \"their upper cells let say I'm just going\", 'start': 14268.92, 'duration': 6.04}, {'text': \"to put this as statistics no it's not\", 'start': 14272.319, 'duration': 5.12}, {'text': 'the right', 'start': 14274.96, 'duration': 2.479}, {'text': \"word he's he's not it's like he this is\", 'start': 14280.279, 'duration': 6.441}, {'text': \"the entity card so now you're you're\", 'start': 14284.159, 'duration': 5.921}, {'text': 'wanting to relationship between okay', 'start': 14286.72, 'duration': 5.4}, {'text': 'which is okay in entity card okay all', 'start': 14290.08, 'duration': 4.279}, {'text': 'right if you want fatch that then say', 'start': 14292.12, 'duration': 5.72}, {'text': 'irbil of types which is irreducibility', 'start': 14294.359, 'duration': 5.0}, {'text': 'ofes', 'start': 14297.84, 'duration': 5.319}, {'text': 'iril yes because you know you use uh', 'start': 14299.359, 'duration': 6.361}, {'text': 'when you use like clustering algorithms', 'start': 14303.159, 'duration': 4.961}, {'text': 'you choose attributes and you make it', 'start': 14305.72, 'duration': 5.479}, {'text': \"like pyic variable results how much I'm\", 'start': 14308.12, 'duration': 6.039}, {'text': 'going to stick to this one', 'start': 14311.199, 'duration': 2.96}, {'text': \"for we also had marker gen um I'm just\", 'start': 14319.56, 'duration': 6.48}, {'text': 'going to add to that that', 'start': 14322.88, 'duration': 3.16}, {'text': \"annotation I mean they're\", 'start': 14338.0, 'duration': 3.439}, {'text': 'L you want more than that yeah um and', 'start': 14346.8, 'duration': 7.359}, {'text': 'then maybe also', 'start': 14351.68, 'duration': 5.0}, {'text': 'for a given region that you Meed', 'start': 14354.159, 'duration': 5.04}, {'text': 'proportion of that Sal was is it a rare', 'start': 14356.68, 'duration': 4.799}, {'text': 'Sal', 'start': 14359.199, 'duration': 5.96}, {'text': 'common can I put that in', 'start': 14361.479, 'duration': 3.68}, {'text': 'statistics say your names as you to know', 'start': 14367.199, 'duration': 3.921}, {'text': 'each', 'start': 14369.8, 'duration': 5.0}, {'text': 'other on part', 'start': 14371.12, 'duration': 6.48}, {'text': 'Ste I just want to say that if people', 'start': 14374.8, 'duration': 7.28}, {'text': 'can three names on the on the on the', 'start': 14377.6, 'duration': 7.52}, {'text': 'card so we can perhaps', 'start': 14382.08, 'duration': 5.6}, {'text': 'and email', 'start': 14385.12, 'duration': 5.4}, {'text': 'address I think we', 'start': 14387.68, 'duration': 5.44}, {'text': 'have names are good enough yeah and then', 'start': 14390.52, 'duration': 3.48}, {'text': 'you can', 'start': 14393.12, 'duration': 4.079}, {'text': \"take we won't need the last name because\", 'start': 14394.0, 'duration': 7.08}, {'text': \"that's a very common name oh\", 'start': 14397.199, 'duration': 3.881}, {'text': 'yes', 'start': 14402.6, 'duration': 6.24}, {'text': 'one I having list of data sets that that', 'start': 14404.76, 'duration': 6.399}, {'text': 'makes an', 'start': 14408.84, 'duration': 2.319}, {'text': 'appearance can I put', 'start': 14412.279, 'duration': 3.681}, {'text': 'table came up with a big list but I', 'start': 14426.04, 'duration': 4.68}, {'text': 'think two that we most want to add on', 'start': 14428.439, 'duration': 5.361}, {'text': 'here first of all is evolutionary', 'start': 14430.72, 'duration': 6.12}, {'text': 'conservation which might seem you know a', 'start': 14433.8, 'duration': 5.88}, {'text': 'little outside but this determines how', 'start': 14436.84, 'duration': 4.76}, {'text': \"well you're actually going to be able to\", 'start': 14439.68, 'duration': 4.559}, {'text': \"study and you know if we're looking and\", 'start': 14441.6, 'duration': 5.16}, {'text': 'mouse can we expect to find this a human', 'start': 14444.239, 'duration': 4.881}, {'text': \"if we're you know interested in\", 'start': 14446.76, 'duration': 4.2}, {'text': 'translatability you know how deep does', 'start': 14449.12, 'duration': 3.6}, {'text': 'this go you', 'start': 14450.96, 'duration': 4.319}, {'text': \"know yeah I think it's a distinct\", 'start': 14452.72, 'duration': 5.8}, {'text': 'category is evolutionary obervation and', 'start': 14455.279, 'duration': 5.04}, {'text': 'then the other thing that we wanted to', 'start': 14458.52, 'duration': 3.12}, {'text': 'bring', 'start': 14460.319, 'duration': 4.241}, {'text': 'up is a disease', 'start': 14461.64, 'duration': 5.759}, {'text': \"State um and perhaps that's more\", 'start': 14464.56, 'duration': 6.12}, {'text': 'generalizable to just States in general', 'start': 14467.399, 'duration': 5.361}, {'text': 'um but I think you know this is this is', 'start': 14470.68, 'duration': 3.92}, {'text': 'a distinct category that a lot of people', 'start': 14472.76, 'duration': 3.96}, {'text': 'are going to be really interested in is', 'start': 14474.6, 'duration': 3.839}, {'text': 'you know what are the diseases that any', 'start': 14476.72, 'duration': 4.88}, {'text': 'given cell type um is actually involved', 'start': 14478.439, 'duration': 4.96}, {'text': 'in these', 'start': 14481.6, 'duration': 4.2}, {'text': 'State just', 'start': 14483.399, 'duration': 5.521}, {'text': 'what yeah yeah B basically a set of', 'start': 14485.8, 'duration': 7.0}, {'text': 'states that this cell might participated', 'start': 14488.92, 'duration': 7.92}, {'text': 'right um and then yeah and just just to', 'start': 14492.8, 'duration': 6.2}, {'text': 'break apart again the marker Gene', 'start': 14496.84, 'duration': 4.76}, {'text': 'concept um you know because it seems', 'start': 14499.0, 'duration': 5.72}, {'text': \"like there's some complication there you\", 'start': 14501.6, 'duration': 5.839}, {'text': 'know everybody wants markers but there', 'start': 14504.72, 'duration': 6.719}, {'text': 'are more markers than just genes right', 'start': 14507.439, 'duration': 6.241}, {'text': \"there's you know the the morphology is a\", 'start': 14511.439, 'duration': 6.321}, {'text': 'kind of marker a medium spiny neuron you', 'start': 14513.68, 'duration': 6.799}, {'text': \"know they're protein markers so I would\", 'start': 14517.76, 'duration': 4.92}, {'text': 'say marker is kind of a distinct thing', 'start': 14520.479, 'duration': 4.84}, {'text': 'on its own and then you know uh the', 'start': 14522.68, 'duration': 4.84}, {'text': 'molecular state is the other side of', 'start': 14525.319, 'duration': 4.321}, {'text': 'that which could be transcripton it', 'start': 14527.52, 'duration': 5.56}, {'text': 'could be protein signatures so marker', 'start': 14529.64, 'duration': 6.36}, {'text': \"Gene sort of it's two distinct\", 'start': 14533.08, 'duration': 6.279}, {'text': 'categories of thing markers and then', 'start': 14536.0, 'duration': 5.199}, {'text': 'molecular', 'start': 14539.359, 'duration': 3.761}, {'text': 'features that should probably be', 'start': 14541.199, 'duration': 5.28}, {'text': \"separated yeah and that's I think a good\", 'start': 14543.12, 'duration': 6.079}, {'text': 'summary for our', 'start': 14546.479, 'duration': 2.72}, {'text': \"team okay um I'm Laura re I'm from NIH\", 'start': 14553.359, 'duration': 7.601}, {'text': \"I'm a program analyst for ban I\", 'start': 14557.84, 'duration': 5.599}, {'text': 'obviously am not a researcher in this', 'start': 14560.96, 'duration': 5.96}, {'text': 'field um but you know we did the best we', 'start': 14563.439, 'duration': 4.8}, {'text': 'could just thinking about you know', 'start': 14566.92, 'duration': 3.439}, {'text': \"things I've heard at lot of working\", 'start': 14568.239, 'duration': 7.521}, {'text': \"group meetings I've gone to and\", 'start': 14570.359, 'duration': 5.401}, {'text': 'um um so one of the first things I', 'start': 14580.399, 'duration': 3.401}, {'text': 'thought of was just maybe listing', 'start': 14582.56, 'duration': 2.879}, {'text': 'something about interactions that the', 'start': 14583.8, 'duration': 5.2}, {'text': 'cell type has with other cell types', 'start': 14585.439, 'duration': 6.201}, {'text': 'contivity and we did list a lot of the', 'start': 14589.0, 'duration': 5.279}, {'text': 'things that are already up there would I', 'start': 14591.64, 'duration': 5.639}, {'text': 'put that on the marker and put', 'start': 14594.279, 'duration': 7.04}, {'text': 'connectivity morphology morphology okay', 'start': 14597.279, 'duration': 5.641}, {'text': \"and then I don't know to give another\", 'start': 14601.319, 'duration': 3.441}, {'text': 'one maybe just like listing you know', 'start': 14602.92, 'duration': 4.439}, {'text': 'some of the references of Publications', 'start': 14604.76, 'duration': 6.32}, {'text': 'that um are associated that', 'start': 14607.359, 'duration': 6.281}, {'text': 'cell this over here', 'start': 14611.08, 'duration': 5.8}, {'text': 'with can we add one more maybe the ID of', 'start': 14613.64, 'duration': 6.16}, {'text': 'the cell type just a unique IDE I think', 'start': 14616.88, 'duration': 5.72}, {'text': \"that's important to by the way we did\", 'start': 14619.8, 'duration': 5.92}, {'text': 'ask a CH for', 'start': 14622.6, 'duration': 3.12}, {'text': 'um so we were', 'start': 14642.72, 'duration': 4.84}, {'text': 'discussing', 'start': 14645.96, 'duration': 5.199}, {'text': \"sorry oh um my name is for I'm from The\", 'start': 14647.56, 'duration': 6.32}, {'text': 'Institute um one of the questions we had', 'start': 14651.159, 'duration': 6.881}, {'text': 'was around uh what the expected user', 'start': 14653.88, 'duration': 7.04}, {'text': 'base would be uh', 'start': 14658.04, 'duration': 7.52}, {'text': 'for an app like this um and one of the', 'start': 14660.92, 'duration': 6.399}, {'text': 'things that we decided was important was', 'start': 14665.56, 'duration': 4.24}, {'text': 'just a plain English description at like', 'start': 14667.319, 'duration': 4.96}, {'text': 'the high school undergrad', 'start': 14669.8, 'duration': 6.12}, {'text': 'level um just to get like a base level', 'start': 14672.279, 'duration': 5.0}, {'text': 'understanding of what exactly it is that', 'start': 14675.92, 'duration': 6.479}, {'text': \"we're describing um and then we had a\", 'start': 14677.279, 'duration': 7.16}, {'text': 'this is a kind of cheting but we had', 'start': 14682.399, 'duration': 4.88}, {'text': 'modality specific featur so we used', 'start': 14684.439, 'duration': 6.561}, {'text': 'hatch seek as as an example to um yeah', 'start': 14687.279, 'duration': 5.761}, {'text': 'Define like transonic', 'start': 14691.0, 'duration': 5.279}, {'text': 'markers morphology specific markers eph', 'start': 14693.04, 'duration': 4.439}, {'text': 'specific', 'start': 14696.279, 'duration': 5.841}, {'text': 'markers you have to add e', 'start': 14697.479, 'duration': 4.641}, {'text': 'yesy can I ask', 'start': 14705.0, 'duration': 5.04}, {'text': 'one of the aspects that came out our', 'start': 14713.76, 'duration': 3.719}, {'text': 'discussion I think was markers versus', 'start': 14715.0, 'duration': 4.88}, {'text': 'characteristics in general so markers', 'start': 14717.479, 'duration': 4.561}, {'text': 'being the things that make you special', 'start': 14719.88, 'duration': 3.599}, {'text': 'maybe among your siblings or whatever', 'start': 14722.04, 'duration': 3.52}, {'text': 'versus knowing all characteristics can', 'start': 14723.479, 'duration': 4.121}, {'text': 'also be helpful I just want to if that', 'start': 14725.56, 'duration': 3.16}, {'text': 'things resonates with others I want to', 'start': 14727.6, 'duration': 3.759}, {'text': \"make sure that doesn't get\", 'start': 14728.72, 'duration': 2.639}, {'text': 'lost what said you just put down', 'start': 14740.279, 'duration': 5.08}, {'text': \"description I think they've got you've\", 'start': 14743.0, 'duration': 5.04}, {'text': 'got to add your levels of description', 'start': 14745.359, 'duration': 3.761}, {'text': 'for different', 'start': 14748.04, 'duration': 3.279}, {'text': \"audiences right youve got you've got\", 'start': 14749.12, 'duration': 6.0}, {'text': 'your entry level entry level you may', 'start': 14751.319, 'duration': 6.0}, {'text': 'still be a scientist but not this type', 'start': 14755.12, 'duration': 5.64}, {'text': 'of scientist and then the the you are a', 'start': 14757.319, 'duration': 5.641}, {'text': 'neuroscientist and you are the expert in', 'start': 14760.76, 'duration': 8.719}, {'text': \"the S like levels okay uh I'll just put\", 'start': 14762.96, 'duration': 9.64}, {'text': 'levels should the definition of self', 'start': 14769.479, 'duration': 5.441}, {'text': 'change the language that you used to', 'start': 14772.6, 'duration': 5.16}, {'text': \"describe it's it's the cognition of the\", 'start': 14774.92, 'duration': 6.359}, {'text': 'user explain to a', 'start': 14777.76, 'duration': 3.519}, {'text': \"three-year-old okay since I'm the last T\", 'start': 14788.279, 'duration': 6.321}, {'text': 'can I read off things which may not be', 'start': 14791.76, 'duration': 6.88}, {'text': 'on there or do I am I bound to the two', 'start': 14794.6, 'duration': 7.04}, {'text': 'all', 'start': 14798.64, 'duration': 3.0}, {'text': 'we have like physiology though s yeah', 'start': 14804.0, 'duration': 7.279}, {'text': 'um synaptic', 'start': 14808.76, 'duration': 4.92}, {'text': 'proteins', 'start': 14811.279, 'duration': 5.841}, {'text': 'syone and other key', 'start': 14813.68, 'duration': 6.559}, {'text': 'proteins um we have literature reference', 'start': 14817.12, 'duration': 5.4}, {'text': 'we have literature reference okay we', 'start': 14820.239, 'duration': 4.841}, {'text': 'have that', 'start': 14822.52, 'duration': 6.759}, {'text': 'um relevant computational', 'start': 14825.08, 'duration': 7.079}, {'text': 'models computational mod in other words', 'start': 14829.279, 'duration': 5.04}, {'text': 'someone builds a model for example as we', 'start': 14832.159, 'duration': 5.401}, {'text': 'do of some sat and fireing kind of', 'start': 14834.319, 'duration': 7.521}, {'text': 'engine um and this is now available to', 'start': 14837.56, 'duration': 6.96}, {'text': 'demo it kind of code and stuff', 'start': 14841.84, 'duration': 7.84}, {'text': 'that um and linkage to supporting data', 'start': 14844.52, 'duration': 7.799}, {'text': 'we have that', 'start': 14849.68, 'duration': 5.2}, {'text': \"too okay okay that's all I think we've\", 'start': 14852.319, 'duration': 5.84}, {'text': 'got a pretty good list there all right', 'start': 14854.88, 'duration': 6.559}, {'text': 'so I can just add one more thing by all', 'start': 14858.159, 'duration': 7.28}, {'text': \"these things on my list already so it's\", 'start': 14861.439, 'duration': 4.0}, {'text': 'so so I think one thing would', 'start': 14865.479, 'duration': 5.68}, {'text': 'be would be useful especially when you', 'start': 14868.279, 'duration': 5.681}, {'text': 'talk about entity cards so how much you', 'start': 14871.159, 'duration': 5.441}, {'text': 'can really trust this information did', 'start': 14873.96, 'duration': 4.279}, {'text': 'there some sort of confidence go', 'start': 14876.6, 'duration': 4.2}, {'text': 'somewhere with it was the last item on', 'start': 14878.239, 'duration': 3.801}, {'text': \"Mike's list\", 'start': 14880.8, 'duration': 3.24}, {'text': \"I that's right well I did have that\", 'start': 14882.04, 'duration': 4.279}, {'text': \"there I didn't say it but it's\", 'start': 14884.04, 'duration': 5.8}, {'text': \"true yeah we would like I don't know\", 'start': 14886.319, 'duration': 6.12}, {'text': \"that's no I think I'll put this under\", 'start': 14889.84, 'duration': 4.92}, {'text': 'this section applicability so I would', 'start': 14892.439, 'duration': 4.401}, {'text': 'say statistics', 'start': 14894.76, 'duration': 5.719}, {'text': 'confidence score yeah because I think', 'start': 14896.84, 'duration': 5.84}, {'text': 'once you start to do it then then', 'start': 14900.479, 'duration': 3.8}, {'text': 'especially if you thought think about', 'start': 14902.68, 'duration': 3.84}, {'text': 'underlining tools that you can do a lot', 'start': 14904.279, 'duration': 3.721}, {'text': 'of very interesting things with', 'start': 14906.52, 'duration': 3.36}, {'text': 'underlining tools because then I can', 'start': 14908.0, 'duration': 4.159}, {'text': 'read and create some sort of graph and', 'start': 14909.88, 'duration': 5.2}, {'text': 'say okay this this this kind of answer', 'start': 14912.159, 'duration': 4.721}, {'text': \"I'm doing I have trust because I'm\", 'start': 14915.08, 'duration': 3.92}, {'text': 'looking at underlying Gene cards or', 'start': 14916.88, 'duration': 4.96}, {'text': 'entity cards and I can tool up all that', 'start': 14919.0, 'duration': 5.319}, {'text': \"score so some level but I don't know\", 'start': 14921.84, 'duration': 4.04}, {'text': 'whether you want to', 'start': 14924.319, 'duration': 4.88}, {'text': 'get schol', 'start': 14925.88, 'duration': 3.319}, {'text': \"ofan evidence that's what you need you\", 'start': 14929.8, 'duration': 4.92}, {'text': 'how much evidence is there prior based', 'start': 14933.0, 'duration': 5.68}, {'text': 'on the prior information that this', 'start': 14934.72, 'duration': 7.32}, {'text': 'this you can compute that on the', 'start': 14938.68, 'duration': 7.2}, {'text': 'statistics it covers', 'start': 14942.04, 'duration': 3.84}, {'text': 'un what about after we put all this', 'start': 14946.479, 'duration': 5.321}, {'text': 'together right what about like an', 'start': 14950.0, 'duration': 5.199}, {'text': 'intelligent model that knows itself and', 'start': 14951.8, 'duration': 6.639}, {'text': 'also you say you have other you know', 'start': 14955.199, 'duration': 7.601}, {'text': 'sequence cell type data you can ask this', 'start': 14958.439, 'duration': 7.92}, {'text': 'intelligent will tell you oh this is', 'start': 14962.8, 'duration': 8.599}, {'text': 'this is this this is or anything I hope', 'start': 14966.359, 'duration': 7.12}, {'text': \"that's the future we get\", 'start': 14971.399, 'duration': 5.04}, {'text': 'to uh I think this this kind of tells us', 'start': 14973.479, 'duration': 4.8}, {'text': 'the prior right this is what people are', 'start': 14976.439, 'duration': 4.88}, {'text': 'thinking about the which could use and', 'start': 14978.279, 'duration': 5.441}, {'text': 'in fact I heard from', 'start': 14981.319, 'duration': 6.361}, {'text': 'GB and GB gave him almost all of these', 'start': 14983.72, 'duration': 6.32}, {'text': \"as relevant aspects of s so there's\", 'start': 14987.68, 'duration': 3.719}, {'text': 'something in the literature which', 'start': 14990.04, 'duration': 5.079}, {'text': 'suggests that this is in our heads way', 'start': 14991.399, 'duration': 5.121}, {'text': 'if we going to think about what the', 'start': 14995.119, 'duration': 3.401}, {'text': 'computational form of this would be', 'start': 14996.52, 'duration': 5.12}, {'text': 'through AI or other approaches of saying', 'start': 14998.52, 'duration': 5.719}, {'text': 'could you automate the thinking around', 'start': 15001.64, 'duration': 3.88}, {'text': 'these', 'start': 15004.239, 'duration': 6.801}, {'text': 'Dimensions to get at subsets of this', 'start': 15005.52, 'duration': 9.56}, {'text': \"space right so automated it's actually\", 'start': 15011.04, 'duration': 7.159}, {'text': 'not the same thing as', 'start': 15015.08, 'duration': 7.199}, {'text': \"intelligent I mean it's more like just\", 'start': 15018.199, 'duration': 9.28}, {'text': 'like CHP it knows what it is and and can', 'start': 15022.279, 'duration': 9.2}, {'text': 'tell you if you ask say okay I have', 'start': 15027.479, 'duration': 7.561}, {'text': 'sequence this new cell Tye what is what', 'start': 15031.479, 'duration': 5.92}, {'text': 'is it then they can tell you based on', 'start': 15035.04, 'duration': 5.119}, {'text': 'what you already know buing into this', 'start': 15037.399, 'duration': 6.88}, {'text': 'parameters of parameters I tell you so', 'start': 15040.159, 'duration': 6.04}, {'text': \"that's kind of the difference between\", 'start': 15044.279, 'duration': 5.401}, {'text': 'say a traditional statistic approach to', 'start': 15046.199, 'duration': 7.0}, {'text': 'classify something or something versus', 'start': 15049.68, 'duration': 7.759}, {'text': \"gpp now right so yeah so I don't know if\", 'start': 15053.199, 'duration': 8.08}, {'text': 'Chris wants to chime in on the boang', 'start': 15057.439, 'duration': 8.04}, {'text': 'paper in in the space yeah', 'start': 15061.279, 'duration': 7.721}, {'text': \"I'll talk a little more\", 'start': 15065.479, 'duration': 3.521}, {'text': 'tomorrow yeah have a small', 'start': 15069.92, 'duration': 5.12}, {'text': 'what was the question so in relation to', 'start': 15077.76, 'duration': 5.04}, {'text': 'what an intelligent model could tell us', 'start': 15080.119, 'duration': 5.961}, {'text': 'about I mean the input is really in this', 'start': 15082.8, 'duration': 6.479}, {'text': 'space right everything', 'start': 15086.08, 'duration': 3.199}, {'text': \"else is there anything that's not\", 'start': 15092.84, 'duration': 4.399}, {'text': 'derived two more things one is s', 'start': 15100.96, 'duration': 4.279}, {'text': 'point and just think about maybe a', 'start': 15112.52, 'duration': 6.04}, {'text': 'different view so this is based', 'start': 15116.52, 'duration': 6.28}, {'text': \"on but um let's say down at you see\", 'start': 15118.56, 'duration': 6.32}, {'text': 'associate with disease can you see which', 'start': 15122.8, 'duration': 5.439}, {'text': \"cell types for express the Gene and it's\", 'start': 15124.88, 'duration': 6.479}, {'text': 'there sort of a particular sub type that', 'start': 15128.239, 'duration': 6.841}, {'text': 'seems to express it', 'start': 15131.359, 'duration': 6.441}, {'text': 'would I say that link between this and', 'start': 15135.08, 'duration': 4.92}, {'text': 'this gen and', 'start': 15137.8, 'duration': 5.559}, {'text': 'STS yeah but sort of viewing it', 'start': 15140.0, 'duration': 5.84}, {'text': 'from yeah so I would say anything that', 'start': 15143.359, 'duration': 4.361}, {'text': 'connects out this way could be flipped', 'start': 15145.84, 'duration': 3.599}, {'text': 'back to an entity on the other side', 'start': 15147.72, 'duration': 5.0}, {'text': 'right and you connect back to this but', 'start': 15149.439, 'duration': 6.481}, {'text': 'there was one so raises the point of uh', 'start': 15152.72, 'duration': 6.759}, {'text': 'Radiance and how well defined Ty types', 'start': 15155.92, 'duration': 7.559}, {'text': 'are um if we go through this you know', 'start': 15159.479, 'duration': 6.041}, {'text': 'essentially Force bucketing kind of', 'start': 15163.479, 'duration': 5.161}, {'text': 'issue defining type we do have to deal', 'start': 15165.52, 'duration': 6.599}, {'text': 'with kind of how close something is', 'start': 15168.64, 'duration': 4.96}, {'text': 'there be in the', 'start': 15172.119, 'duration': 6.841}, {'text': 'SP not yes yeah general gradi not', 'start': 15173.6, 'duration': 8.839}, {'text': 'yeah you want to add well I I think this', 'start': 15178.96, 'duration': 6.08}, {'text': 'exercise looks like we just trying to', 'start': 15182.439, 'duration': 3.8}, {'text': 'squeeze', 'start': 15185.04, 'duration': 3.8}, {'text': 'everything discrete', 'start': 15186.239, 'duration': 8.401}, {'text': 'States or pigeon hes but if we think', 'start': 15188.84, 'duration': 8.279}, {'text': \"about light that's a continuous\", 'start': 15194.64, 'duration': 7.24}, {'text': 'frequency we red blue green', 'start': 15197.119, 'duration': 8.801}, {'text': \"y but actually what's the best way to\", 'start': 15201.88, 'duration': 8.599}, {'text': 'get describe light uh continuous', 'start': 15205.92, 'duration': 8.68}, {'text': 'Spectrum there right and often a lot of', 'start': 15210.479, 'duration': 6.081}, {'text': \"times It's associated with something\", 'start': 15214.6, 'duration': 4.879}, {'text': 'else like say spatial for development or', 'start': 15216.56, 'duration': 5.639}, {'text': 'something so showing I think we need', 'start': 15219.479, 'duration': 5.561}, {'text': 'quantum electr', 'start': 15222.199, 'duration': 2.841}, {'text': \"now I'm going to take house rules and\", 'start': 15225.279, 'duration': 3.92}, {'text': 'say', 'start': 15226.8, 'duration': 2.399}, {'text': 'okay actually in response to that the', 'start': 15230.159, 'duration': 6.12}, {'text': 'measurement that sat is sorted out of', 'start': 15233.52, 'duration': 6.16}, {'text': \"the left column they don't have to be\", 'start': 15236.279, 'duration': 6.2}, {'text': 'necessarily very continuous format even', 'start': 15239.68, 'duration': 4.88}, {'text': 'though we know that the given cell may', 'start': 15242.479, 'duration': 4.321}, {'text': 'not necessarily maintain all its', 'start': 15244.56, 'duration': 4.639}, {'text': 'features throughout this lifetime the', 'start': 15246.8, 'duration': 4.399}, {'text': 'few features that exist for example even', 'start': 15249.199, 'duration': 5.16}, {'text': 'S as Mike was saying you may have a', 'start': 15251.199, 'duration': 5.28}, {'text': 'different sort of like expression at the', 'start': 15254.359, 'duration': 4.641}, {'text': 'sematic level but similar sort of', 'start': 15256.479, 'duration': 4.92}, {'text': 'expression at sematic level maybe thenes', 'start': 15259.0, 'duration': 4.279}, {'text': 'are different and neurons are massive', 'start': 15261.399, 'duration': 3.441}, {'text': \"you know cells right so they're very\", 'start': 15263.279, 'duration': 4.08}, {'text': 'different for example liquor cells so', 'start': 15264.84, 'duration': 5.16}, {'text': \"that's another Morgan was saying what\", 'start': 15267.359, 'duration': 5.0}, {'text': 'happens to the cell throughout the state', 'start': 15270.0, 'duration': 4.72}, {'text': 'of the disease right or we had a', 'start': 15272.359, 'duration': 4.8}, {'text': 'discussion here what happens to the fate', 'start': 15274.72, 'duration': 4.399}, {'text': 'of a cell throughout his lifetime and I', 'start': 15277.159, 'duration': 4.601}, {'text': 'think these are all like domains that', 'start': 15279.119, 'duration': 5.12}, {'text': 'are at odds with this sort of like a', 'start': 15281.76, 'duration': 5.359}, {'text': 'cell type Centric concept and you know', 'start': 15284.239, 'duration': 4.841}, {'text': \"we're looking at here let's define a\", 'start': 15287.119, 'duration': 4.24}, {'text': \"cell type but it's cell type something\", 'start': 15289.08, 'duration': 4.279}, {'text': 'necessarily rigid and fixed or not I', 'start': 15291.359, 'duration': 4.361}, {'text': \"think that's a different question to\", 'start': 15293.359, 'duration': 4.0}, {'text': 'that point I think that what you have to', 'start': 15295.72, 'duration': 4.479}, {'text': 'do is you have to essential in this', 'start': 15297.359, 'duration': 9.04}, {'text': 'whole effort to to allow to to allow for', 'start': 15300.199, 'duration': 8.321}, {'text': 'the addition and annotation of', 'start': 15306.399, 'duration': 4.96}, {'text': 'information because this is not going to', 'start': 15308.52, 'duration': 6.08}, {'text': \"be the Factory when it's done it's going\", 'start': 15311.359, 'duration': 5.601}, {'text': 'to have to keep evolving and question', 'start': 15314.6, 'duration': 4.4}, {'text': 'how do we build that in the process how', 'start': 15316.96, 'duration': 6.08}, {'text': 'do we allow people to yeah sorry for', 'start': 15319.0, 'duration': 7.76}, {'text': \"theup no that's\", 'start': 15323.04, 'duration': 3.72}, {'text': \"that's adding everything in here youve\", 'start': 15330.6, 'duration': 5.04}, {'text': 'got like species and disease and', 'start': 15333.359, 'duration': 4.321}, {'text': \"development you're missing the\", 'start': 15335.64, 'duration': 3.92}, {'text': 'demographics', 'start': 15337.68, 'duration': 6.0}, {'text': \"right there's some environmental\", 'start': 15339.56, 'duration': 8.839}, {'text': 'both both of those things come into here', 'start': 15343.68, 'duration': 7.88}, {'text': 'somewhere right I I would call that a', 'start': 15348.399, 'duration': 6.401}, {'text': 'grouping factor on some of these things', 'start': 15351.56, 'duration': 5.839}, {'text': 'maybe well you got to model it so since', 'start': 15354.8, 'duration': 5.28}, {'text': 'you got to model it you got to be there', 'start': 15357.399, 'duration': 5.641}, {'text': \"it's it needs an\", 'start': 15360.08, 'duration': 2.96}, {'text': 'identifier just a a broader sort of', 'start': 15364.96, 'duration': 5.159}, {'text': 'comment around the topic of gradiance I', 'start': 15367.76, 'duration': 5.88}, {'text': \"I think you know a assumption that we'll\", 'start': 15370.119, 'duration': 5.841}, {'text': 'be making within the grant if we pursue', 'start': 15373.64, 'duration': 4.839}, {'text': 'these kind of Ned cards further is that', 'start': 15375.96, 'duration': 5.64}, {'text': 'cell type or in particular an Cel type', 'start': 15378.479, 'duration': 5.76}, {'text': 'as a as a construct for intermediating', 'start': 15381.6, 'duration': 3.719}, {'text': 'knowledge about lots of different', 'start': 15384.239, 'duration': 2.721}, {'text': 'domains is going to be useful for a', 'start': 15385.319, 'duration': 3.601}, {'text': 'number of years that seems like a', 'start': 15386.96, 'duration': 3.76}, {'text': \"reasonable assumption but I don't think\", 'start': 15388.92, 'duration': 3.359}, {'text': \"it's the only path of pursuing I think\", 'start': 15390.72, 'duration': 3.2}, {'text': 'something like Matt my cells is about', 'start': 15392.279, 'duration': 3.16}, {'text': 'saying you know one thing about your', 'start': 15393.92, 'duration': 3.16}, {'text': \"cells we're going to predict other\", 'start': 15395.439, 'duration': 3.121}, {'text': \"things for you right now we're\", 'start': 15397.08, 'duration': 3.92}, {'text': 'predicting the cell type label but why', 'start': 15398.56, 'duration': 4.799}, {'text': 'not disintermediate with cell and just', 'start': 15401.0, 'duration': 4.92}, {'text': 'say you want to know about morphology or', 'start': 15403.359, 'duration': 3.84}, {'text': 'about what tool you can Target with', 'start': 15405.92, 'duration': 3.319}, {'text': \"based on what you know you know here's a\", 'start': 15407.199, 'duration': 4.16}, {'text': 'prediction for that instead so the more', 'start': 15409.239, 'duration': 3.521}, {'text': 'sophisticated the underlying Knowledge', 'start': 15411.359, 'duration': 3.96}, {'text': 'Graph gets the better able we are to', 'start': 15412.76, 'duration': 4.12}, {'text': 'make predictions from any point in it to', 'start': 15415.319, 'duration': 4.12}, {'text': 'another space Maybe maybe we can a', 'start': 15416.88, 'duration': 4.08}, {'text': 'decade from now start to remove the', 'start': 15419.439, 'duration': 3.68}, {'text': 'importance of cell type as a n construct', 'start': 15420.96, 'duration': 5.0}, {'text': \"but I that for now I think we'll\", 'start': 15423.119, 'duration': 4.921}, {'text': 'parallel path both of those and see you', 'start': 15425.96, 'duration': 3.96}, {'text': 'know which one is more fruitful whether', 'start': 15428.04, 'duration': 4.0}, {'text': \"they're both needed for a long time I\", 'start': 15429.92, 'duration': 3.64}, {'text': \"think that's a great point I this is an\", 'start': 15432.04, 'duration': 4.239}, {'text': \"abstract concept right now it's defined\", 'start': 15433.56, 'duration': 5.639}, {'text': 'by a set of underlying data and', 'start': 15436.279, 'duration': 6.04}, {'text': 'processes that Define it and I think B', 'start': 15439.199, 'duration': 6.601}, {'text': \"sh gr has that she's working with aaty\", 'start': 15442.319, 'duration': 7.84}, {'text': 'data to do imputation of other features', 'start': 15445.8, 'duration': 7.639}, {'text': \"based on uh some subset of data that's\", 'start': 15450.159, 'duration': 5.04}, {'text': 'available all right so I think this has', 'start': 15453.439, 'duration': 4.121}, {'text': \"been a great exercise I'll take a pict\", 'start': 15455.199, 'duration': 5.841}, {'text': 'can actually just to close maybe is uh', 'start': 15457.56, 'duration': 5.839}, {'text': 'you asked for what can fit on one page', 'start': 15461.04, 'duration': 4.159}, {'text': \"and I don't think this all fits on one\", 'start': 15463.399, 'duration': 4.561}, {'text': 'page itely fit on in fact it will all', 'start': 15465.199, 'duration': 6.2}, {'text': \"fit on a page and I'll\", 'start': 15467.96, 'duration': 3.439}, {'text': 'say uh we will prioritize and and the', 'start': 15471.88, 'duration': 5.2}, {'text': 'idea behind I think the entity page is', 'start': 15475.119, 'duration': 4.12}, {'text': 'that it will be customizable right but', 'start': 15477.08, 'duration': 3.56}, {'text': \"it will have links it doesn't have to\", 'start': 15479.239, 'duration': 3.361}, {'text': 'have full descriptions of everything on', 'start': 15480.64, 'duration': 4.32}, {'text': 'the page but different people might view', 'start': 15482.6, 'duration': 4.879}, {'text': 'different subsets of this as priority', 'start': 15484.96, 'duration': 4.92}, {'text': \"depending on the work they're doing Etc\", 'start': 15487.479, 'duration': 5.92}, {'text': \"and that's a UI and user ux problem of\", 'start': 15489.88, 'duration': 5.359}, {'text': 'saying we still I think what comes', 'start': 15493.399, 'duration': 3.76}, {'text': 'across this is some part of this', 'start': 15495.239, 'duration': 4.2}, {'text': 'information is important and relevant to', 'start': 15497.159, 'duration': 5.32}, {'text': 'some subset of people over here and that', 'start': 15499.439, 'duration': 7.92}, {'text': 'it would be useful to have uh edges of', 'start': 15502.479, 'duration': 7.201}, {'text': 'the abstract cell types to these pieces', 'start': 15507.359, 'duration': 4.201}, {'text': 'of information in fact the absence of', 'start': 15509.68, 'duration': 4.0}, {'text': 'this information is also going to be', 'start': 15511.56, 'duration': 4.839}, {'text': 'useful and what is missing that we', 'start': 15513.68, 'duration': 5.519}, {'text': \"should have had that's not there when we\", 'start': 15516.399, 'duration': 4.561}, {'text': 'look at a cell type descriptor or a cell', 'start': 15519.199, 'duration': 4.481}, {'text': 'type ID somewhere uh that might itself', 'start': 15520.96, 'duration': 5.04}, {'text': 'open up opportunities for others to say', 'start': 15523.68, 'duration': 4.04}, {'text': \"hey we're missing this information for\", 'start': 15526.0, 'duration': 4.0}, {'text': 'this cell type and maybe somebody there', 'start': 15527.72, 'duration': 3.96}, {'text': 'is an external data set or something', 'start': 15530.0, 'duration': 4.84}, {'text': 'else that brings that in so I would', 'start': 15531.68, 'duration': 6.639}, {'text': 'say I think there will be a challenge', 'start': 15534.84, 'duration': 6.359}, {'text': \"we'll see how we fit it into a page but\", 'start': 15538.319, 'duration': 6.401}, {'text': 'I think we could fit at least', 'start': 15541.199, 'duration': 6.28}, {'text': 'pointers to many of these things on a', 'start': 15544.72, 'duration': 6.28}, {'text': 'page or on a view and uh just as Tech', 'start': 15547.479, 'duration': 8.76}, {'text': 'was showing uh live Al page tomorrow we', 'start': 15551.0, 'duration': 6.96}, {'text': \"we're going to start from the other end\", 'start': 15556.239, 'duration': 3.96}, {'text': 'we going to show examples of what might', 'start': 15557.96, 'duration': 5.08}, {'text': 'have so type in theage look like what', 'start': 15560.199, 'duration': 5.521}, {'text': 'structure in theage look like what might', 'start': 15563.04, 'duration': 5.8}, {'text': 'gen in theage look like as', 'start': 15565.72, 'duration': 6.719}, {'text': 'well look forward to that yeah just want', 'start': 15568.84, 'duration': 6.519}, {'text': 'to make a quick comment so so this is', 'start': 15572.439, 'duration': 5.521}, {'text': 'great by way this exercise is great but', 'start': 15575.359, 'duration': 5.601}, {'text': 'the way I think about this even all', 'start': 15577.96, 'duration': 6.279}, {'text': 'grabs and you can all have a controversy', 'start': 15580.96, 'duration': 5.76}, {'text': 'exactly what the entity should have the', 'start': 15584.239, 'duration': 5.12}, {'text': 'cell type cards should have but I think', 'start': 15586.72, 'duration': 5.0}, {'text': 'at the end of the day all we trying to', 'start': 15589.359, 'duration': 4.681}, {'text': 'like capture of the information right if', 'start': 15591.72, 'duration': 4.28}, {'text': \"you think about right there's a lot of\", 'start': 15594.04, 'duration': 4.64}, {'text': 'different dimensions of the information', 'start': 15596.0, 'duration': 4.6}, {'text': 'whether you subdivide in this entity', 'start': 15598.68, 'duration': 5.12}, {'text': \"cards or some Uber knowled gra doesn't\", 'start': 15600.6, 'duration': 5.28}, {'text': 'matter but I think capturing the', 'start': 15603.8, 'duration': 4.2}, {'text': 'information is really really important', 'start': 15605.88, 'duration': 5.0}, {'text': 'right then you can really go to the next', 'start': 15608.0, 'duration': 6.199}, {'text': 'level right you can uh you can go from', 'start': 15610.88, 'duration': 5.559}, {'text': 'inferencing right whe you can do', 'start': 15614.199, 'duration': 4.321}, {'text': 'classical inferencing of the information', 'start': 15616.439, 'duration': 5.201}, {'text': 'but once you Capt information or you can', 'start': 15618.52, 'duration': 7.28}, {'text': 'create to to doing but we have to', 'start': 15621.64, 'duration': 6.839}, {'text': 'capture that information R and and I', 'start': 15625.8, 'duration': 4.92}, {'text': \"think that's the key thing and capture\", 'start': 15628.479, 'duration': 5.0}, {'text': 'the consensus as well and and knowing', 'start': 15630.72, 'duration': 4.439}, {'text': 'what information is missing I think', 'start': 15633.479, 'duration': 3.081}, {'text': \"that's the other part right we often\", 'start': 15635.159, 'duration': 3.921}, {'text': 'capture information that exists in a in', 'start': 15636.56, 'duration': 5.44}, {'text': 'a Consortium or in a project they are', 'start': 15639.08, 'duration': 4.56}, {'text': 'limited by res resources in terms of', 'start': 15642.0, 'duration': 4.439}, {'text': 'what they were able to capture perhaps', 'start': 15643.64, 'duration': 4.799}, {'text': 'and so even kind of highlighting some of', 'start': 15646.439, 'duration': 3.76}, {'text': \"these things as we don't know anything\", 'start': 15648.439, 'duration': 4.04}, {'text': 'about this for this potic sell type is', 'start': 15650.199, 'duration': 3.881}, {'text': 'information I think the lack of', 'start': 15652.479, 'duration': 4.241}, {'text': 'knowledge of something uh so it would be', 'start': 15654.08, 'duration': 5.56}, {'text': 'good to have that available as in I', 'start': 15656.72, 'duration': 5.399}, {'text': \"don't know or we don't maybe somebody\", 'start': 15659.64, 'duration': 4.12}, {'text': 'else knows and this is where the read', 'start': 15662.119, 'duration': 3.441}, {'text': 'right part of information could come in', 'start': 15663.76, 'duration': 4.559}, {'text': 'that somebody could come along and say', 'start': 15665.56, 'duration': 4.52}, {'text': 'hey I know something in my data set', 'start': 15668.319, 'duration': 5.321}, {'text': 'about the cell type because I can map my', 'start': 15670.08, 'duration': 7.199}, {'text': 'data set to this ID and I have collected', 'start': 15673.64, 'duration': 5.759}, {'text': 'other data that could fit into some of', 'start': 15677.279, 'duration': 3.96}, {'text': 'these things like I just want to just', 'start': 15679.399, 'duration': 3.84}, {'text': 'add one more thing and this is something', 'start': 15681.239, 'duration': 6.361}, {'text': 'in SRA and we talk about our thing so so', 'start': 15683.239, 'duration': 6.92}, {'text': 'a lot of information that MIT is cting', 'start': 15687.6, 'duration': 5.0}, {'text': 'right to this effort right we can really', 'start': 15690.159, 'duration': 6.12}, {'text': 'feed that into our services into our', 'start': 15692.6, 'duration': 6.32}, {'text': 'models and all that right but someone', 'start': 15696.279, 'duration': 4.92}, {'text': 'has to capture that information right so', 'start': 15698.92, 'duration': 4.279}, {'text': 'I think this is this is one of the key', 'start': 15701.199, 'duration': 5.12}, {'text': 'aspects in terms of it the only other', 'start': 15703.199, 'duration': 5.601}, {'text': 'thing I just want to ask you s is that', 'start': 15706.319, 'duration': 4.601}, {'text': \"you're right now thinking about knowled\", 'start': 15708.8, 'duration': 4.08}, {'text': 'representation but are you thinking', 'start': 15710.92, 'duration': 3.6}, {'text': \"about as you're thinking about your\", 'start': 15712.88, 'duration': 3.439}, {'text': 'infrastructure are you thinking about', 'start': 15714.52, 'duration': 6.2}, {'text': 'influencing aspect as well or just he is', 'start': 15716.319, 'duration': 7.361}, {'text': \"uh I have said let's pause on it for a\", 'start': 15720.72, 'duration': 4.439}, {'text': 'little bit till we actually get', 'start': 15723.68, 'duration': 4.08}, {'text': 'information flowing through the system', 'start': 15725.159, 'duration': 5.721}, {'text': \"that's important for us but he is that's\", 'start': 15727.76, 'duration': 5.88}, {'text': \"that's what gets him excited\", 'start': 15730.88, 'duration': 6.599}, {'text': \"that's why he asking and all so but yeah\", 'start': 15733.64, 'duration': 5.16}, {'text': \"because I think that's the part because\", 'start': 15737.479, 'duration': 3.0}, {'text': 'I think still you can do a lot', 'start': 15738.8, 'duration': 4.679}, {'text': 'interesting machine learning but still I', 'start': 15740.479, 'duration': 7.361}, {'text': 'think M graphs at least are', 'start': 15743.479, 'duration': 7.281}, {'text': \"this is also interested yeah I mean it's\", 'start': 15747.84, 'duration': 4.359}, {'text': \"the kind of thing that we've been doing\", 'start': 15750.76, 'duration': 5.599}, {'text': 'for years so I can definitely talk about', 'start': 15752.199, 'duration': 6.24}, {'text': 'what straight forward to them like what', 'start': 15756.359, 'duration': 4.321}, {'text': 'the pits', 'start': 15758.439, 'duration': 6.361}, {'text': 'because yeah I mean this', 'start': 15760.68, 'duration': 4.12}, {'text': 'really no', 'start': 15764.92, 'duration': 4.559}, {'text': \"longer maybe it's out of battery we've H\", 'start': 15766.92, 'duration': 5.12}, {'text': 'the end of the', 'start': 15769.479, 'duration': 2.561}, {'text': 'day sorry', 'start': 15774.08, 'duration': 6.399}, {'text': \"just um yeah you know there's some\", 'start': 15776.56, 'duration': 5.4}, {'text': 'straightforward stuff you could easily', 'start': 15780.479, 'duration': 5.0}, {'text': 'do with graphs with inference across', 'start': 15781.96, 'duration': 6.96}, {'text': 'the the graph itself graph closure but', 'start': 15785.479, 'duration': 5.72}, {'text': 'then there lot more we can do without', 'start': 15788.92, 'duration': 5.519}, {'text': 'lots of PES as well', 'start': 15791.199, 'duration': 3.24}, {'text': 'to discuss so I think we want this', 'start': 15795.439, 'duration': 4.68}, {'text': 'integrated information landscape on', 'start': 15797.92, 'duration': 5.0}, {'text': \"which whether it's lm's coming to do\", 'start': 15800.119, 'duration': 6.681}, {'text': 'something it more standard semantic web', 'start': 15802.92, 'duration': 5.8}, {'text': 'even that space is transforming by the', 'start': 15806.8, 'duration': 4.639}, {'text': 'minute because of the new technologies', 'start': 15808.72, 'duration': 4.479}, {'text': \"it's it's really a fun space but it's\", 'start': 15811.439, 'duration': 3.561}, {'text': 'more about getting this information in', 'start': 15813.199, 'duration': 3.12}, {'text': 'that I think is going to be key and', 'start': 15815.0, 'duration': 3.68}, {'text': 'connecting the dots and knowing that', 'start': 15816.319, 'duration': 5.0}, {'text': 'people have different opinions on some', 'start': 15818.68, 'duration': 4.24}, {'text': 'of this information to be able to', 'start': 15821.319, 'duration': 4.401}, {'text': \"represent those I'm not going to just\", 'start': 15822.92, 'duration': 4.8}, {'text': 'say ideological but sometimes', 'start': 15825.72, 'duration': 6.28}, {'text': 'ideological differences is going to be', 'start': 15827.72, 'duration': 4.28}, {'text': 'important just on the reason the one', 'start': 15833.0, 'duration': 4.399}, {'text': 'place where I think you really need it', 'start': 15835.68, 'duration': 4.639}, {'text': 'and to think about it early is just this', 'start': 15837.399, 'duration': 5.8}, {'text': 'ularity you know if you look at like', 'start': 15840.319, 'duration': 5.88}, {'text': \"cell by gen you'll see t- cell is only\", 'start': 15843.199, 'duration': 6.801}, {'text': 'used to annotate very weird', 'start': 15846.199, 'duration': 7.16}, {'text': 'specific specific specific enough term', 'start': 15850.0, 'duration': 5.52}, {'text': 'four so the general terms tend to get', 'start': 15853.359, 'duration': 5.601}, {'text': 'used for specific classes T Cell without', 'start': 15855.52, 'duration': 6.32}, {'text': 'using the closure of the without using', 'start': 15858.96, 'duration': 5.359}, {'text': 'some kind of RA granularity closure', 'start': 15861.84, 'duration': 4.359}, {'text': 'structure you can wind up with quite', 'start': 15864.319, 'duration': 3.641}, {'text': \"weird results and you don't start trying\", 'start': 15866.199, 'duration': 2.881}, {'text': 'to say', 'start': 15867.96, 'duration': 3.319}, {'text': \"that that's that's probably the one\", 'start': 15869.08, 'duration': 4.68}, {'text': \"place where it's worth really pay\", 'start': 15871.279, 'duration': 6.241}, {'text': 'atten yes how we', 'start': 15873.76, 'duration': 7.8}, {'text': \"doing we're okay so that brings us to\", 'start': 15877.52, 'duration': 6.0}, {'text': 'end up day', 'start': 15881.56, 'duration': 4.799}, {'text': \"one uh we welcome any feedback I me I'm\", 'start': 15883.52, 'duration': 4.4}, {'text': 'going to take a snapshot of this and', 'start': 15886.359, 'duration': 5.241}, {'text': 'have gbt trans transcribe it for me uh', 'start': 15887.92, 'duration': 5.279}, {'text': \"since I've learned over the last week\", 'start': 15891.6, 'duration': 5.559}, {'text': \"that it's really good at doing that uh\", 'start': 15893.199, 'duration': 6.321}, {'text': \"add yeah and we'll also do that for all\", 'start': 15897.159, 'duration': 4.801}, {'text': 'the papers that DOA collected if you', 'start': 15899.52, 'duration': 4.679}, {'text': \"haven't given a paper please pass it on\", 'start': 15901.96, 'duration': 6.56}, {'text': 'to d uh tomorrow we', 'start': 15904.199, 'duration': 10.12}, {'text': 'will start at 9 as well', 'start': 15908.52, 'duration': 5.799}, {'text': \"it's\", 'start': 15916.319, 'duration': 2.16}, {'text': 'at all right so arrival is around 8:30', 'start': 15919.6, 'duration': 8.679}, {'text': \"we'll start proceedings at night uh as\", 'start': 15924.479, 'duration': 5.68}, {'text': 'yasine said this morning we have a', 'start': 15928.279, 'duration': 3.801}, {'text': 'reception at the end of the day tomorrow', 'start': 15930.159, 'duration': 3.561}, {'text': \"today you're on our own I hear some\", 'start': 15932.08, 'duration': 3.8}, {'text': 'people are going to a baseball game if', 'start': 15933.72, 'duration': 3.88}, {'text': 'anybody needs po us to other things who', 'start': 15935.88, 'duration': 4.599}, {'text': \"are not local uh feel free to ask me I'm\", 'start': 15937.6, 'duration': 5.799}, {'text': 'happy to point to things or if some of', 'start': 15940.479, 'duration': 4.321}, {'text': 'us are probably going to have dinner', 'start': 15943.399, 'duration': 3.88}, {'text': 'around here so if you want to just join', 'start': 15944.8, 'duration': 4.679}, {'text': 'uh let us know', 'start': 15947.279, 'duration': 5.321}, {'text': \"um I'm supposed to create alt text for a\", 'start': 15949.479, 'duration': 4.96}, {'text': 'lot of images', 'start': 15952.6, 'duration': 4.44}, {'text': 'but you can just leave the par that you', 'start': 15954.439, 'duration': 6.8}, {'text': \"didn't use at the the mic col we could\", 'start': 15957.04, 'duration': 6.359}, {'text': 'leave it on the table this room will', 'start': 15961.239, 'duration': 4.2}, {'text': 'stay this', 'start': 15963.399, 'duration': 6.72}, {'text': 'way okay thank you folks', 'start': 15965.439, 'duration': 4.68}, {'text': 'I just wanted to', 'start': 15980.52, 'duration': 2.679}, {'text': 'explained to so', 'start': 15986.68, 'duration': 6.28}, {'text': 'now', 'start': 15989.96, 'duration': 3.0}, {'text': 'on what what is special yeah no no no I', 'start': 15995.319, 'duration': 6.12}, {'text': \"just thought it' be like a fun exercise\", 'start': 15999.439, 'duration': 3.84}, {'text': 'you know then', 'start': 16001.439, 'duration': 4.281}, {'text': 'all', 'start': 16003.279, 'duration': 2.441}, {'text': 'represent what', 'start': 16014.359, 'duration': 4.0}, {'text': \"yeah but you know it's it's like a\", 'start': 16049.84, 'duration': 3.84}]\n"
     ]
    }
   ],
   "source": [
    "get_transcript(\"bSRMmpSTJ8E\")"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "2ea68728-7289-4a28-a4a6-29af0ec8a1e5",
   "metadata": {},
   "source": [
    "## Extract Video Transcription using whisper\n",
    "\n",
    "- [whisper](https://openai.com/index/whisper/)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 14,
   "id": "7db3af9d-7d71-41e5-8437-7b180cb67eac",
   "metadata": {},
   "outputs": [],
   "source": [
    "!pip install -q moviepy openai-whisper"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 15,
   "id": "e9ba693e-ef37-46e1-ba44-c5bbd3bcac40",
   "metadata": {},
   "outputs": [],
   "source": [
    "!pip install -q torch torchvision torchaudio --upgrade\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "id": "9cce6ba7-0f50-49d4-9b5b-b34c99f7e107",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "MoviePy - Writing audio in output_audio.wav\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "                                                                                                       \r"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "MoviePy - Done.\n",
      "Audio extraction complete, transcription in progress...\n",
      "Loading model using: mps\n",
      "Error: Could not run 'aten::empty.memory_format' with arguments from the 'SparseMPS' backend. This could be because the operator doesn't exist for this backend, or was omitted during the selective/custom build process (if using custom build). If you are a Facebook employee using PyTorch on mobile, please visit https://fburl.com/ptmfixes for possible resolutions. 'aten::empty.memory_format' is only available for these backends: [CPU, MPS, Meta, QuantizedCPU, QuantizedMeta, MkldnnCPU, SparseCPU, SparseMeta, SparseCsrCPU, SparseCsrMeta, BackendSelect, Python, FuncTorchDynamicLayerBackMode, Functionalize, Named, Conjugate, Negative, ZeroTensor, ADInplaceOrView, AutogradOther, AutogradCPU, AutogradCUDA, AutogradHIP, AutogradXLA, AutogradMPS, AutogradIPU, AutogradXPU, AutogradHPU, AutogradVE, AutogradLazy, AutogradMTIA, AutogradPrivateUse1, AutogradPrivateUse2, AutogradPrivateUse3, AutogradMeta, AutogradNestedTensor, Tracer, AutocastCPU, AutocastCUDA, FuncTorchBatched, BatchedNestedTensor, FuncTorchVmapMode, Batched, VmapMode, FuncTorchGradWrapper, PythonTLSSnapshot, FuncTorchDynamicLayerFrontMode, PreDispatch, PythonDispatcher].\n",
      "\n",
      "CPU: registered at /Users/runner/work/pytorch/pytorch/pytorch/build/aten/src/ATen/RegisterCPU.cpp:31420 [kernel]\n",
      "MPS: registered at /Users/runner/work/pytorch/pytorch/pytorch/build/aten/src/ATen/RegisterMPS.cpp:27550 [kernel]\n",
      "Meta: registered at /Users/runner/work/pytorch/pytorch/pytorch/build/aten/src/ATen/RegisterMeta.cpp:26984 [kernel]\n",
      "QuantizedCPU: registered at /Users/runner/work/pytorch/pytorch/pytorch/build/aten/src/ATen/RegisterQuantizedCPU.cpp:951 [kernel]\n",
      "QuantizedMeta: registered at /Users/runner/work/pytorch/pytorch/pytorch/build/aten/src/ATen/RegisterQuantizedMeta.cpp:105 [kernel]\n",
      "MkldnnCPU: registered at /Users/runner/work/pytorch/pytorch/pytorch/build/aten/src/ATen/RegisterMkldnnCPU.cpp:515 [kernel]\n",
      "SparseCPU: registered at /Users/runner/work/pytorch/pytorch/pytorch/build/aten/src/ATen/RegisterSparseCPU.cpp:1387 [kernel]\n",
      "SparseMeta: registered at /Users/runner/work/pytorch/pytorch/pytorch/build/aten/src/ATen/RegisterSparseMeta.cpp:249 [kernel]\n",
      "SparseCsrCPU: registered at /Users/runner/work/pytorch/pytorch/pytorch/build/aten/src/ATen/RegisterSparseCsrCPU.cpp:1135 [kernel]\n",
      "SparseCsrMeta: registered at /Users/runner/work/pytorch/pytorch/pytorch/build/aten/src/ATen/RegisterSparseCsrMeta.cpp:185 [kernel]\n",
      "BackendSelect: registered at /Users/runner/work/pytorch/pytorch/pytorch/build/aten/src/ATen/RegisterBackendSelect.cpp:807 [kernel]\n",
      "Python: registered at /Users/runner/work/pytorch/pytorch/pytorch/aten/src/ATen/core/PythonFallbackKernel.cpp:154 [backend fallback]\n",
      "FuncTorchDynamicLayerBackMode: registered at /Users/runner/work/pytorch/pytorch/pytorch/aten/src/ATen/functorch/DynamicLayer.cpp:497 [backend fallback]\n",
      "Functionalize: registered at /Users/runner/work/pytorch/pytorch/pytorch/aten/src/ATen/FunctionalizeFallbackKernel.cpp:324 [backend fallback]\n",
      "Named: registered at /Users/runner/work/pytorch/pytorch/pytorch/aten/src/ATen/core/NamedRegistrations.cpp:7 [backend fallback]\n",
      "Conjugate: fallthrough registered at /Users/runner/work/pytorch/pytorch/pytorch/aten/src/ATen/ConjugateFallback.cpp:21 [kernel]\n",
      "Negative: fallthrough registered at /Users/runner/work/pytorch/pytorch/pytorch/aten/src/ATen/native/NegateFallback.cpp:22 [kernel]\n",
      "ZeroTensor: fallthrough registered at /Users/runner/work/pytorch/pytorch/pytorch/aten/src/ATen/ZeroTensorFallback.cpp:90 [kernel]\n",
      "ADInplaceOrView: fallthrough registered at /Users/runner/work/pytorch/pytorch/pytorch/aten/src/ATen/core/VariableFallbackKernel.cpp:86 [backend fallback]\n",
      "AutogradOther: registered at /Users/runner/work/pytorch/pytorch/pytorch/torch/csrc/autograd/generated/VariableType_2.cpp:19078 [autograd kernel]\n",
      "AutogradCPU: registered at /Users/runner/work/pytorch/pytorch/pytorch/torch/csrc/autograd/generated/VariableType_2.cpp:19078 [autograd kernel]\n",
      "AutogradCUDA: registered at /Users/runner/work/pytorch/pytorch/pytorch/torch/csrc/autograd/generated/VariableType_2.cpp:19078 [autograd kernel]\n",
      "AutogradHIP: registered at /Users/runner/work/pytorch/pytorch/pytorch/torch/csrc/autograd/generated/VariableType_2.cpp:19078 [autograd kernel]\n",
      "AutogradXLA: registered at /Users/runner/work/pytorch/pytorch/pytorch/torch/csrc/autograd/generated/VariableType_2.cpp:19078 [autograd kernel]\n",
      "AutogradMPS: registered at /Users/runner/work/pytorch/pytorch/pytorch/torch/csrc/autograd/generated/VariableType_2.cpp:19078 [autograd kernel]\n",
      "AutogradIPU: registered at /Users/runner/work/pytorch/pytorch/pytorch/torch/csrc/autograd/generated/VariableType_2.cpp:19078 [autograd kernel]\n",
      "AutogradXPU: registered at /Users/runner/work/pytorch/pytorch/pytorch/torch/csrc/autograd/generated/VariableType_2.cpp:19078 [autograd kernel]\n",
      "AutogradHPU: registered at /Users/runner/work/pytorch/pytorch/pytorch/torch/csrc/autograd/generated/VariableType_2.cpp:19078 [autograd kernel]\n",
      "AutogradVE: registered at /Users/runner/work/pytorch/pytorch/pytorch/torch/csrc/autograd/generated/VariableType_2.cpp:19078 [autograd kernel]\n",
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      "PythonDispatcher: registered at /Users/runner/work/pytorch/pytorch/pytorch/aten/src/ATen/core/PythonFallbackKernel.cpp:158 [backend fallback]\n",
      "\n",
      "Falling back to CPU...\n",
      "Transcribing...\n",
      "Transcription completed\n",
      "Writing to file...\n",
      "Successfully written text to GMT20240604-154609_Recording_large.txt\n"
     ]
    }
   ],
   "source": [
    "import os\n",
    "import moviepy.editor as mp\n",
    "import whisper\n",
    "import torch\n",
    "\n",
    "# Set the environment variable to disable the upper limit for memory allocations\n",
    "os.environ[\"PYTORCH_MPS_HIGH_WATERMARK_RATIO\"] = \"0.0\"\n",
    "\n",
    "def extract_audio_from_video(video_path, audio_output_path):\n",
    "    \"\"\"\n",
    "    Extracts audio from a video file and saves it to an output path.\n",
    "    \"\"\"\n",
    "    video = mp.VideoFileClip(video_path)\n",
    "    video.audio.write_audiofile(audio_output_path)\n",
    "\n",
    "def mps_available():\n",
    "    \"\"\"\n",
    "    Returns the appropriate device for Whisper model.\n",
    "    Uses MPS for Apple Silicon if available, otherwise falls back to CPU.\n",
    "    \"\"\"\n",
    "    if torch.backends.mps.is_available() and torch.backends.mps.is_built():\n",
    "        torch.mps.empty_cache()  # Clear cache\n",
    "        device = torch.device(\"mps\")\n",
    "    else:\n",
    "        device = torch.device(\"cpu\")\n",
    "    return device\n",
    "\n",
    "def transcribe_audio(audio_path, model_name='base'):\n",
    "    \"\"\"\n",
    "    Transcribes audio using Whisper.\n",
    "    \"\"\"\n",
    "    device = mps_available()\n",
    "    print(f\"Loading model using: {device}\")\n",
    "    \n",
    "    model = None\n",
    "    try:\n",
    "        model = whisper.load_model(model_name, device=device)\n",
    "        print(\"Model loading complete\")\n",
    "    except Exception as e:\n",
    "        print(f\"Error: {e}\")\n",
    "        print(\"Falling back to CPU...\")\n",
    "        # Load model on CPU if there's an issue with MPS\n",
    "        model = whisper.load_model(model_name, device=\"cpu\")\n",
    "    \n",
    "    print(\"Transcribing...\")\n",
    "    result = model.transcribe(audio_path)\n",
    "    return result['text']\n",
    "\n",
    "def transcribe_video(video_path, audio_output_path='output_audio.wav', model_name='large'):\n",
    "    \"\"\"\n",
    "    Extracts audio from a video and then transcribes it.\n",
    "    \"\"\"\n",
    "    extract_audio_from_video(video_path, audio_output_path)\n",
    "    print(\"Audio extraction complete, transcription in progress...\")\n",
    "    transcription = transcribe_audio(audio_output_path, model_name)\n",
    "    print(\"Transcription completed\")\n",
    "    return transcription\n",
    "\n",
    "def write_transcripts(video_path, transcript_file_path):\n",
    "    \"\"\"\n",
    "    Writes transcripts to a text file.\n",
    "    \"\"\"\n",
    "    transcription = transcribe_video(video_path)\n",
    "\n",
    "    try:\n",
    "        with open(transcript_file_path, 'w') as file:\n",
    "            print(\"Writing to file...\")\n",
    "            file.write(transcription)\n",
    "        print(f\"Successfully written text to {transcript_file_path}\")\n",
    "    except Exception as e:\n",
    "        print(f\"An error occurred: {e}\")\n",
    "\n",
    "if __name__ == \"__main__\":\n",
    "    video_path = '/Users/tekrajchhetri/Downloads/video.mp4'\n",
    "    transcript_file_path = \"GMT20240604-154609_Recording_large.txt\"\n",
    "    write_transcripts(video_path, transcript_file_path)\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "id": "5e4f240c-7314-476e-b5fe-9473b6fc8374",
   "metadata": {},
   "outputs": [],
   "source": [
    "import torch"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "id": "ff0321cf-535d-4b30-bbe8-def0b5911e8b",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "tensor([1., 1., 1., 1., 1.], device='mps:0')"
      ]
     },
     "execution_count": 9,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "x = torch.ones(5, device=torch.device(\"mps\"))\n",
    "x"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "786a7b8f-36c9-4ed1-a0f2-5bdc69793577",
   "metadata": {},
   "outputs": [],
   "source": []
  }
 ],
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