Technical changes checklist

[asmeurer]

#204 is already quite full, so I'll open a new issue for this. These are the technical changes that we need to make for PeerJ. Some of these are just for me when I do the submission

Funding Statement

Please remove all financial and grant disclosure information from the Acknowledgments "The author of this paper Francesco Bonazzi thanks the Deutsche Forschungsgemeinschaft (DFG) for its financial support via the International Research Training Group 1524 "Self- Assembled Soft Matter Nano-Structures at Interfaces.". This information should only be provided in the Funding Statement here: https://peerj.com/manuscripts/11084/declarations/#question_18.

Affiliations

1. We notice that the author affiliations you have provided in the system are slightly different to those in the document.

2. As our system will treat these affiliations as metadata, please ensure that both the 'system version' and the 'document version' are complete and the same.

3. Please edit the author affiliations using the 'Edit' button to the right of the names here https://peerj.com/manuscripts/11410/authors, or edit your manuscript source file and upload it here https://peerj.com/manuscripts/11410/files.

LaTeX Submission: .bib and .tex Files

Please provide the BIB and TEX files for your LaTeX manuscript file here: https://peerj.com/manuscripts/11410/files. Please uploaded using the Primary Files, LaTeX Source File category.

Tables / Figures

1. Please use numbers to name your files, example: Fig1.eps, Fig2.png, Table1.docx.

2. Please combine any figures / tables with multiple parts into single, labeled, files. Ex: Figs 1A and 1B should be one figure grouping the parts either next to each other or one on top of the other and only labeled “A” and “B” on the respective figure parts. Each figure with multiple parts should label each part alphabetically (e.g. A, B, C) and all parts should be submitted together in one file.

3. Please upload your figures in either EPS, PNG, JPG (photographs only) or PDF (vector PDF's only) as primary files here https://peerj.com/manuscripts/11410/files. Figures should be at least 900 by 900 pixels (without unnecessary white space around them).

4. If you have figures / tables composed in the LaTeX source file we can use that at the time of production. Please leave a Note to Staff at https://peerj.com/manuscripts/11410/declarations/#other if you choose to provide the tables / figures in the LaTex source file so that staff will know that's where it can be found. (example note to staff: Tables 1, 2, 3 and Figure 2 are in the source file manuscript and can be found in the .tex file). Alternately, tables may be provided as word docs here: https://peerj.com/manuscripts/11410/files.

[asmeurer]

Regarding the affiliations, I guess there are a few differences due to addresses and departments in the metadata. Also, @mattcurry and @aterrel have added additional affiliations to the PeerJ site that aren't in the paper. If possible, we should add those in the paper.

[Upabjojr]

I get Access Denied for the links

• https://peerj.com/manuscripts/11410/files/
• https://peerj.com/manuscripts/11410/declarations/
• https://peerj.com/manuscripts/11084/declarations/#question_18

I can access https://peerj.com/manuscripts/11410/ seamlessly. Am I doing something wrong?

[asmeurer]

I think only I can access those.

[asmeurer]

@certik since you managed the authors, perhaps you can help with the metadata. Are you able to access https://peerj.com/manuscripts/11410/authors/?

[asmeurer]

@certik will you be able to do this? Otherwise I will need to do it, so let me know either way.

[certik]

I won't be able to do it today or tomorrow.

Sent from my mobile phone.
On Aug 24, 2016 11:37 AM, "Aaron Meurer" notifications@github.com wrote:

@certik https://github.com/certik will you be able to do this?
Otherwise I will need to do it, so let me know either way.

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[asmeurer]

How about in the next week or two?

[certik]

I should be able to. What exactly should I do?

Sent from my mobile phone.
On Aug 24, 2016 12:18 PM, "Aaron Meurer" notifications@github.com wrote:

How about in the next week or two?

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[asmeurer]

Well, first it would help if you could tell me if you can access that site.

[asmeurer]

Here is the current content of the acknowledgements section of the paper, which I am removing and will be adding to the funding statement in PeerJ when I resubmit

All authors thank the Google Summer of Code for its financial support of students who contributed to SymPy.
The author of this paper Ondřej Čertík thanks the Los Alamos National Laboratory for its financial support.
The author of this paper Richard P. Muller thanks Sandia National Laboratories for their financial support.
The author of this paper Francesco Bonazzi thanks the Deutsche Forschungsgemeinschaft (DFG) for its financial support via the International Research Training Group 1524 “Self- Assembled Soft Matter Nano-Structures at Interfaces.”

[asmeurer]

I added the following text to the form on PeerJ (they don't like the words "thankful", "generous", or "acknowledge")

Google Summer of Code has provided financial support to students who contributed to SymPy.
The author of this paper Ondřej Čertík was supported by the Los Alamos National Laboratory.
The author of this paper Richard P. Muller was supported by Sandia National Laboratories.
The author of this paper Francesco Bonazzi was supported by Deutsche Forschungsgemeinschaft (DFG) via the International Research Training Group 1524 “Self- Assembled Soft Matter Nano-Structures at Interfaces.”

Let me know if I should change any of the wording. CC @certik @rpmuller @Upabjojr

[asmeurer]

Updated it to

Google Summer of Code has provided financial support to students who contributed to SymPy.

The author of this paper Ondřej Čertík was supported by the Los Alamos National Laboratory. The Los Alamos National Laboratory is operated by Los Alamos National Security,
LLC, for the National Nuclear Security Administration of the U.S. Department of
Energy under Contract No. DE-AC52-06NA25396.

The author of this paper Richard P. Muller was supported by Sandia National Laboratories.
Sandia is a multiprogram laboratory operated by Sandia Corporation, a
Lockheed Martin Company, for the United States Department of Energy's
National Nuclear Security Administration under Contract
DE-AC04-94AL85000.

The author of this paper Francesco Bonazzi was supported by Deutsche Forschungsgemeinschaft (DFG) via the International Research Training Group 1524 “Self- Assembled Soft Matter Nano-Structures at Interfaces.”