diff --git a/.cruft.json b/.cruft.json
index 949bfd0..293b1f4 100644
--- a/.cruft.json
+++ b/.cruft.json
@@ -1,30 +1,27 @@
{
"template": "https://github.com/radix-ai/poetry-cookiecutter",
- "commit": "4127874124193c60cd5e2bfaa025473b8f30411f",
+ "commit": "8ab7ee0accff3b9cb0e470bfc925858fc04d1e97",
"checkout": null,
"context": {
"cookiecutter": {
- "package_name": "Conformal Tights",
- "package_description": "A scikit-learn meta-estimator for computing tight conformal predictions",
- "package_url": "https://github.com/radix-ai/conformal-tights",
+ "project_type": "package",
+ "project_name": "Conformal Tights",
+ "project_description": "A Python package that adds conformal prediction of coherent quantiles and intervals to any scikit-learn regressor or Darts forecaster.",
+ "project_url": "https://github.com/radix-ai/conformal-tights",
"author_name": "Laurent Sorber",
"author_email": "laurent@radix.ai",
"python_version": "3.10",
- "docker_image": "python:$PYTHON_VERSION-slim",
"development_environment": "strict",
"with_conventional_commits": "1",
"with_fastapi_api": "0",
- "with_jupyter_lab": "0",
- "with_pydantic_typing": "0",
- "with_sentry_logging": "0",
- "with_streamlit_app": "0",
"with_typer_cli": "0",
"continuous_integration": "GitHub",
- "docstring_style": "NumPy",
"private_package_repository_name": "",
"private_package_repository_url": "",
- "__package_name_kebab_case": "conformal-tights",
- "__package_name_snake_case": "conformal_tights",
+ "__docker_image": "python:$PYTHON_VERSION-slim",
+ "__docstring_style": "NumPy",
+ "__project_name_kebab_case": "conformal-tights",
+ "__project_name_snake_case": "conformal_tights",
"_template": "https://github.com/radix-ai/poetry-cookiecutter"
}
},
diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json
index 73efb6b..4bde056 100644
--- a/.devcontainer/devcontainer.json
+++ b/.devcontainer/devcontainer.json
@@ -10,6 +10,8 @@
"vscode": {
"extensions": [
"charliermarsh.ruff",
+ "GitHub.vscode-github-actions",
+ "GitHub.vscode-pull-request-github",
"ms-python.mypy-type-checker",
"ms-python.python",
"ms-toolsai.jupyter",
diff --git a/.github/dependabot.yml b/.github/dependabot.yml
index 0232f93..93d5246 100644
--- a/.github/dependabot.yml
+++ b/.github/dependabot.yml
@@ -8,4 +8,22 @@ updates:
commit-message:
prefix: "ci"
prefix-development: "ci"
- include: "scope"
+ include: scope
+ groups:
+ ci-dependencies:
+ patterns:
+ - "*"
+ - package-ecosystem: pip
+ directory: /
+ schedule:
+ interval: monthly
+ commit-message:
+ prefix: "chore"
+ prefix-development: "build"
+ include: scope
+ allow:
+ - dependency-type: development
+ versioning-strategy: increase
+ groups:
+ development-dependencies:
+ dependency-type: development
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index 27c82ae..d54d0ff 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -28,7 +28,7 @@ jobs:
node-version: 21
- name: Install @devcontainers/cli
- run: npm install --location=global @devcontainers/cli@0.55.0
+ run: npm install --location=global @devcontainers/cli@0.58.0
- name: Start Dev Container
run: |
diff --git a/README.md b/README.md
index 3105aaf..b8533e5 100644
--- a/README.md
+++ b/README.md
@@ -262,10 +262,12 @@ plt.tight_layout()
```sh
cat << EOF >> ~/.ssh/config
+
Host *
AddKeysToAgent yes
IgnoreUnknown UseKeychain
UseKeychain yes
+ ForwardAgent yes
EOF
```
@@ -275,12 +277,12 @@ plt.tight_layout()
2. Install Docker
1. [Install Docker Desktop](https://www.docker.com/get-started).
- - Enable *Use Docker Compose V2* in Docker Desktop's preferences window.
- *Linux only*:
- Export your user's user id and group id so that [files created in the Dev Container are owned by your user](https://github.com/moby/moby/issues/3206):
```sh
cat << EOF >> ~/.bashrc
+
export UID=$(id --user)
export GID=$(id --group)
EOF
diff --git a/notebooks/README.ipynb b/notebooks/README.ipynb
index 104841f..2845458 100644
--- a/notebooks/README.ipynb
+++ b/notebooks/README.ipynb
@@ -9,6 +9,7 @@
"# 👖 Conformal Tights\n",
"\n",
"Conformal Tights is a Python package that exports:\n",
+ "\n",
"- a [scikit-learn](https://github.com/scikit-learn/scikit-learn) [meta-estimator](https://scikit-learn.org/stable/glossary.html#term-meta-estimator) that adds [conformal prediction](https://en.wikipedia.org/wiki/Conformal_prediction) of coherent [quantiles](https://en.wikipedia.org/wiki/Quantile) and [intervals](https://en.wikipedia.org/wiki/Prediction_interval) to any [scikit-learn regressor](https://scikit-learn.org/stable/glossary.html#term-regressor)\n",
"- a [Darts](https://github.com/unit8co/darts) [forecaster](https://unit8co.github.io/darts/generated_api/darts.models.forecasting.regression_model.html) that adds conformally calibrated [probabilistic time series forecasting](https://unit8co.github.io/darts/userguide/forecasting_overview.html#probabilistic-forecasts) to any scikit-learn regressor\n",
"\n",
@@ -65,16 +66,7 @@
"remove_output"
]
},
- "outputs": [
- {
- "name": "stderr",
- "output_type": "stream",
- "text": [
- "/opt/conformal-tights-env/lib/python3.10/site-packages/statsforecast/core.py:26: TqdmWarning: IProgress not found. Please update jupyter and ipywidgets. See https://ipywidgets.readthedocs.io/en/stable/user_install.html\n",
- " from tqdm.autonotebook import tqdm\n"
- ]
- }
- ],
+ "outputs": [],
"source": [
"from conformal_tights import ConformalCoherentQuantileRegressor\n",
"from sklearn.datasets import fetch_openml\n",
@@ -608,12 +600,15 @@
"\n",
"1. [Generate an SSH key](https://docs.github.com/en/authentication/connecting-to-github-with-ssh/generating-a-new-ssh-key-and-adding-it-to-the-ssh-agent#generating-a-new-ssh-key) and [add the SSH key to your GitHub account](https://docs.github.com/en/authentication/connecting-to-github-with-ssh/adding-a-new-ssh-key-to-your-github-account).\n",
"1. Configure SSH to automatically load your SSH keys:\n",
+ "\n",
" ```sh\n",
" cat << EOF >> ~/.ssh/config\n",
+ "\n",
" Host *\n",
" AddKeysToAgent yes\n",
" IgnoreUnknown UseKeychain\n",
" UseKeychain yes\n",
+ " ForwardAgent yes\n",
" EOF\n",
" ```\n",
"\n",
@@ -623,11 +618,12 @@
"2. Install Docker\n",
"\n",
"1. [Install Docker Desktop](https://www.docker.com/get-started).\n",
- " - Enable _Use Docker Compose V2_ in Docker Desktop's preferences window.\n",
- " - _Linux only_:\n",
+ " - *Linux only*:\n",
" - Export your user's user id and group id so that [files created in the Dev Container are owned by your user](https://github.com/moby/moby/issues/3206):\n",
+ "\n",
" ```sh\n",
" cat << EOF >> ~/.bashrc\n",
+ " \n",
" export UID=$(id --user)\n",
" export GID=$(id --group)\n",
" EOF\n",
@@ -639,7 +635,7 @@
"3. Install VS Code or PyCharm\n",
"\n",
"1. [Install VS Code](https://code.visualstudio.com/) and [VS Code's Dev Containers extension](https://marketplace.visualstudio.com/items?itemName=ms-vscode-remote.remote-containers). Alternatively, install [PyCharm](https://www.jetbrains.com/pycharm/download/).\n",
- "2. _Optional:_ install a [Nerd Font](https://www.nerdfonts.com/font-downloads) such as [FiraCode Nerd Font](https://github.com/ryanoasis/nerd-fonts/tree/master/patched-fonts/FiraCode) and [configure VS Code](https://github.com/tonsky/FiraCode/wiki/VS-Code-Instructions) or [configure PyCharm](https://github.com/tonsky/FiraCode/wiki/Intellij-products-instructions) to use it.\n",
+ "2. *Optional:* install a [Nerd Font](https://www.nerdfonts.com/font-downloads) such as [FiraCode Nerd Font](https://github.com/ryanoasis/nerd-fonts/tree/master/patched-fonts/FiraCode) and [configure VS Code](https://github.com/tonsky/FiraCode/wiki/VS-Code-Instructions) or [configure PyCharm](https://github.com/tonsky/FiraCode/wiki/Intellij-products-instructions) to use it.\n",
"\n",
"\n",
"\n",
@@ -650,11 +646,11 @@
"\n",
"The following development environments are supported:\n",
"\n",
- "1. ⭐️ _GitHub Codespaces_: click on _Code_ and select _Create codespace_ to start a Dev Container with [GitHub Codespaces](https://github.com/features/codespaces).\n",
- "1. ⭐️ _Dev Container (with container volume)_: click on [Open in Dev Containers](https://vscode.dev/redirect?url=vscode://ms-vscode-remote.remote-containers/cloneInVolume?url=https://github.com/radix-ai/conformal-tights) to clone this repository in a container volume and create a Dev Container with VS Code.\n",
- "1. _Dev Container_: clone this repository, open it with VS Code, and run Ctrl/⌘ + ⇧ + P → _Dev Containers: Reopen in Container_.\n",
- "1. _PyCharm_: clone this repository, open it with PyCharm, and [configure Docker Compose as a remote interpreter](https://www.jetbrains.com/help/pycharm/using-docker-compose-as-a-remote-interpreter.html#docker-compose-remote) with the `dev` service.\n",
- "1. _Terminal_: clone this repository, open it with your terminal, and run `docker compose up --detach dev` to start a Dev Container in the background, and then run `docker compose exec dev zsh` to open a shell prompt in the Dev Container.\n",
+ "1. ⭐️ *GitHub Codespaces*: click on *Code* and select *Create codespace* to start a Dev Container with [GitHub Codespaces](https://github.com/features/codespaces).\n",
+ "1. ⭐️ *Dev Container (with container volume)*: click on [Open in Dev Containers](https://vscode.dev/redirect?url=vscode://ms-vscode-remote.remote-containers/cloneInVolume?url=https://github.com/radix-ai/conformal-tights) to clone this repository in a container volume and create a Dev Container with VS Code.\n",
+ "1. *Dev Container*: clone this repository, open it with VS Code, and run Ctrl/⌘ + ⇧ + P → *Dev Containers: Reopen in Container*.\n",
+ "1. *PyCharm*: clone this repository, open it with PyCharm, and [configure Docker Compose as a remote interpreter](https://www.jetbrains.com/help/pycharm/using-docker-compose-as-a-remote-interpreter.html#docker-compose-remote) with the `dev` service.\n",
+ "1. *Terminal*: clone this repository, open it with your terminal, and run `docker compose up --detach dev` to start a Dev Container in the background, and then run `docker compose exec dev zsh` to open a shell prompt in the Dev Container.\n",
"\n",
"\n",
"\n",
diff --git a/poetry.lock b/poetry.lock
index 6e2d179..2afab51 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -16,87 +16,87 @@ triad = ">=0.6.1"
[[package]]
name = "aiohttp"
-version = "3.9.4"
+version = "3.9.5"
description = "Async http client/server framework (asyncio)"
optional = true
python-versions = ">=3.8"
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name = "holidays"
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description = "Generate and work with holidays in Python"
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]
[package.dependencies]
-numpy = [
- {version = ">=1.22.3,<2", markers = "python_version == \"3.10\" and platform_system == \"Windows\" and platform_python_implementation != \"PyPy\""},
- {version = ">=1.18,<2", markers = "python_version != \"3.10\" or platform_system != \"Windows\" or platform_python_implementation == \"PyPy\""},
-]
+numpy = ">=1.22.3"
packaging = ">=21.3"
-pandas = ">=1.0,<2.1.0 || >2.1.0"
-patsy = ">=0.5.4"
-scipy = ">=1.4,<1.9.2 || >1.9.2"
+pandas = ">=1.4,<2.1.0 || >2.1.0"
+patsy = ">=0.5.6"
+scipy = ">=1.8,<1.9.2 || >1.9.2"
[package.extras]
build = ["cython (>=0.29.33)"]
-develop = ["colorama", "cython (>=0.29.33)", "cython (>=0.29.33,<4.0.0)", "flake8", "isort", "joblib", "matplotlib (>=3)", "oldest-supported-numpy (>=2022.4.18)", "pytest (>=7.3.0)", "pytest-cov", "pytest-randomly", "pytest-xdist", "pywinpty", "setuptools-scm[toml] (>=8.0,<9.0)"]
+develop = ["colorama", "cython (>=0.29.33)", "cython (>=3.0.10,<4)", "flake8", "isort", "joblib", "matplotlib (>=3)", "pytest (>=7.3.0,<8)", "pytest-cov", "pytest-randomly", "pytest-xdist", "pywinpty", "setuptools-scm[toml] (>=8.0,<9.0)"]
docs = ["ipykernel", "jupyter-client", "matplotlib", "nbconvert", "nbformat", "numpydoc", "pandas-datareader", "sphinx"]
[[package]]
@@ -4580,18 +4573,18 @@ telegram = ["requests"]
[[package]]
name = "traitlets"
-version = "5.14.2"
+version = "5.14.3"
description = "Traitlets Python configuration system"
optional = false
python-versions = ">=3.8"
files = [
- {file = "traitlets-5.14.2-py3-none-any.whl", hash = "sha256:fcdf85684a772ddeba87db2f398ce00b40ff550d1528c03c14dbf6a02003cd80"},
- {file = "traitlets-5.14.2.tar.gz", hash = "sha256:8cdd83c040dab7d1dee822678e5f5d100b514f7b72b01615b26fc5718916fdf9"},
+ {file = "traitlets-5.14.3-py3-none-any.whl", hash = "sha256:b74e89e397b1ed28cc831db7aea759ba6640cb3de13090ca145426688ff1ac4f"},
+ {file = "traitlets-5.14.3.tar.gz", hash = "sha256:9ed0579d3502c94b4b3732ac120375cda96f923114522847de4b3bb98b96b6b7"},
]
[package.extras]
docs = ["myst-parser", "pydata-sphinx-theme", "sphinx"]
-test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0,<8.1)", "pytest-mock", "pytest-mypy-testing"]
+test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0,<8.2)", "pytest-mock", "pytest-mypy-testing"]
[[package]]
name = "triad"
@@ -4638,6 +4631,24 @@ build = ["cmake (>=3.20)", "lit"]
tests = ["autopep8", "flake8", "isort", "numpy", "pytest", "scipy (>=1.7.1)", "torch"]
tutorials = ["matplotlib", "pandas", "tabulate", "torch"]
+[[package]]
+name = "typeguard"
+version = "4.2.1"
+description = "Run-time type checker for Python"
+optional = false
+python-versions = ">=3.8"
+files = [
+ {file = "typeguard-4.2.1-py3-none-any.whl", hash = "sha256:7da3bd46e61f03e0852f8d251dcbdc2a336aa495d7daff01e092b55327796eb8"},
+ {file = "typeguard-4.2.1.tar.gz", hash = "sha256:c556a1b95948230510070ca53fa0341fb0964611bd05d598d87fb52115d65fee"},
+]
+
+[package.dependencies]
+typing-extensions = {version = ">=4.10.0", markers = "python_version < \"3.13\""}
+
+[package.extras]
+doc = ["Sphinx (>=7)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)"]
+test = ["coverage[toml] (>=7)", "mypy (>=1.2.0)", "pytest (>=7)"]
+
[[package]]
name = "typer"
version = "0.12.3"
@@ -4707,13 +4718,13 @@ zstd = ["zstandard (>=0.18.0)"]
[[package]]
name = "utilsforecast"
-version = "0.1.3"
+version = "0.1.5"
description = "Forecasting utilities"
optional = true
python-versions = ">=3.8"
files = [
- {file = "utilsforecast-0.1.3-py3-none-any.whl", hash = "sha256:e29d88fd9247e64d029f79dab2b71f8f017f0beae91e21e89d15d3cb87b34d3a"},
- {file = "utilsforecast-0.1.3.tar.gz", hash = "sha256:91886384b87bfb7934881d7645a0a9cb1e54704555676a30b0030ce7a094ac0f"},
+ {file = "utilsforecast-0.1.5-py3-none-any.whl", hash = "sha256:4894092690e9d814dd406a02069e3c4e5d594b10003db8c4e2bbeb6cb73c32a7"},
+ {file = "utilsforecast-0.1.5.tar.gz", hash = "sha256:e8b73fcada2b82ec916faeefac330485ad042fa2014f69b52881b5c6d1676dd9"},
]
[package.dependencies]
@@ -4729,13 +4740,13 @@ scalers = ["numba", "scipy"]
[[package]]
name = "virtualenv"
-version = "20.25.1"
+version = "20.25.3"
description = "Virtual Python Environment builder"
optional = false
python-versions = ">=3.7"
files = [
- {file = "virtualenv-20.25.1-py3-none-any.whl", hash = "sha256:961c026ac520bac5f69acb8ea063e8a4f071bcc9457b9c1f28f6b085c511583a"},
- {file = "virtualenv-20.25.1.tar.gz", hash = "sha256:e08e13ecdca7a0bd53798f356d5831434afa5b07b93f0abdf0797b7a06ffe197"},
+ {file = "virtualenv-20.25.3-py3-none-any.whl", hash = "sha256:8aac4332f2ea6ef519c648d0bc48a5b1d324994753519919bddbb1aff25a104e"},
+ {file = "virtualenv-20.25.3.tar.gz", hash = "sha256:7bb554bbdfeaacc3349fa614ea5bff6ac300fc7c335e9facf3a3bcfc703f45be"},
]
[package.dependencies]
@@ -4744,7 +4755,7 @@ filelock = ">=3.12.2,<4"
platformdirs = ">=3.9.1,<5"
[package.extras]
-docs = ["furo (>=2023.7.26)", "proselint (>=0.13)", "sphinx (>=7.1.2)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"]
+docs = ["furo (>=2023.7.26)", "proselint (>=0.13)", "sphinx (>=7.1.2,!=7.3)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"]
test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.4)", "pytest-env (>=0.8.2)", "pytest-freezer (>=0.4.8)", "pytest-mock (>=3.11.1)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=68)", "time-machine (>=2.10)"]
[[package]]
@@ -4769,6 +4780,17 @@ files = [
{file = "webencodings-0.5.1.tar.gz", hash = "sha256:b36a1c245f2d304965eb4e0a82848379241dc04b865afcc4aab16748587e1923"},
]
+[[package]]
+name = "widgetsnbextension"
+version = "4.0.10"
+description = "Jupyter interactive widgets for Jupyter Notebook"
+optional = false
+python-versions = ">=3.7"
+files = [
+ {file = "widgetsnbextension-4.0.10-py3-none-any.whl", hash = "sha256:d37c3724ec32d8c48400a435ecfa7d3e259995201fbefa37163124a9fcb393cc"},
+ {file = "widgetsnbextension-4.0.10.tar.gz", hash = "sha256:64196c5ff3b9a9183a8e699a4227fb0b7002f252c814098e66c4d1cd0644688f"},
+]
+
[[package]]
name = "xarray"
version = "2024.3.0"
@@ -4944,4 +4966,4 @@ darts = ["darts"]
[metadata]
lock-version = "2.0"
python-versions = ">=3.10,<4.0"
-content-hash = "d37df2fa369327671dfea2402d4747ec8657468c2db9a955fbf0e5c3fb9afcf9"
+content-hash = "bee2ba953e26b67021ad25854506c53f9371fe8aa05fbb2cd157894160da4199"
diff --git a/pyproject.toml b/pyproject.toml
index 3755c8a..0c3492c 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -5,7 +5,7 @@ build-backend = "poetry.core.masonry.api"
[tool.poetry] # https://python-poetry.org/docs/pyproject/
name = "conformal-tights"
version = "0.3.1"
-description = "A scikit-learn meta-estimator for computing tight conformal predictions"
+description = "A Python package that adds conformal prediction of coherent quantiles and intervals to any scikit-learn regressor or Darts forecaster."
authors = ["Laurent Sorber "]
readme = "README.md"
repository = "https://github.com/radix-ai/conformal-tights"
@@ -28,27 +28,28 @@ darts = { version = ">=0.25.0", optional = true }
darts = ["darts"]
[tool.poetry.group.test.dependencies] # https://python-poetry.org/docs/master/managing-dependencies/
-commitizen = ">=3.2.1"
-coverage = { extras = ["toml"], version = ">=7.2.5" }
+commitizen = ">=3.21.3"
+coverage = { extras = ["toml"], version = ">=7.4.4" }
lightgbm = ">=4.3.0"
-mypy = ">=1.2.0"
+mypy = ">=1.9.0"
pandas = ">=2.2.1"
-poethepoet = ">=0.20.0"
-pre-commit = ">=3.3.1"
-pytest = ">=7.3.1"
-pytest-clarity = ">=1.0.1"
-pytest-mock = ">=3.10.0"
-pytest-xdist = ">=3.2.1"
-ruff = ">=0.2.1"
-safety = ">=2.3.4,!=2.3.5"
-shellcheck-py = ">=0.9.0"
+poethepoet = ">=0.25.0"
+pre-commit = ">=3.7.0"
+pytest = ">=8.1.1"
+pytest-mock = ">=3.14.0"
+pytest-xdist = ">=3.5.0"
+ruff = ">=0.3.5"
+safety = ">=3.1.0"
+shellcheck-py = ">=0.10.0.1"
+typeguard = ">=4.2.1"
[tool.poetry.group.dev.dependencies] # https://python-poetry.org/docs/master/managing-dependencies/
-cruft = ">=2.14.0"
-ipykernel = ">=6.29.2"
+cruft = ">=2.15.0"
+ipykernel = ">=6.29.4"
+ipywidgets = ">=8.1.2"
matplotlib = ">=3.8.3"
nbconvert = ">=7.16.3"
-pdoc = ">=13.1.1"
+pdoc = ">=14.4.0"
tabulate = ">=0.9.0"
[tool.coverage.report] # https://coverage.readthedocs.io/en/latest/config.html#report