thesis.tex

 %
%  thesis.tex  2011-07-01  Mark Senn  http://engineering.purdue.edu/~mark
%
%  This is the thesis ``root file''.
%
%  To print the final copy of your thesis put a '%'
%  in front of the \includeonly command and type
%  (from page 71 of _LaTeX User's Guide and Reference Manual_, 2nd edition):
%      latex thesis
%      bibtex thesis
%      latex thesis
%      latex thesis
%
%  In "Reference:" listings below:
%      KEY  MEANING
%      TM   ``A Manual for the Preparation of Graduate Theses'',
%             seventh revised edition, The Graduate School, 2006.
%             http://www2.itap.purdue.edu/gradschool//Publications/graduate-thesis-manual.pdf
%      PU   ``A Manual for the Preparation of Graduate Theses'',
%           The Graduate School, Purdue University, 1996.
%           http://www2.itap.purdue.edu/gradschool//Publications/graduate-thesis-manual.pdf
%
%  Search for "CHANGE" below and change things as necessary.
%  I recommend putting "%%" before any existing lines that
%  need to be changed and adding your new line(s) immediately
%  below the existing lines.
%

% See http://www.ecn.purdue.edu/~mark/puthesis/#Options
% for documentclass options.
% CHANGE NEXT LINE?
\documentclass[cs,thesis]{puthesis}

% Define "align" environment used in demo-mathematics.tex.
% CHANGE NEXT LINE?
\usepackage{amsmath}

% Define "multicols" environment environment used in demo-multicols.tex.
% CHANGE NEXT LINE?
\usepackage{multicol}

% Define "subfigure" environment used in "demo-figure.tex".
% CHANGE NEXT LINE?
\usepackage{subfigure}

\usepackage{placeins}

\usepackage{url}

\widowpenalty=300
\clubpenalty=300

% Title of thesis (used on cover and in abstract).
% The title shown must be the full, official title of the
% thesis.  Superscripts and subscripts are not permitted in
% the title.
% Reference: TM 26.
% Use \title{Put Title Here} for a one-line title.
% Use \\ to separate lines.
% Put % at the end of the last line to avoid getting an extra space
% in the abstract.
% There are two forms of title: one line or more than one line.
% There are examples of both below.
% Only use one \title.
% CHANGE NEXT FOUR LINES.
\title{Secure Physical System Design Leveraging PUF Technology}

% First author name with first name first is used for cover.
% Second author name with last name first is used for abstract.
% Your full name as it appears in the University records appears
% on the cover.
% Reference: TM 26, 29.
% There are two forms of author, with and without initials.
% There are examples of both below.
% Only use one \author line.
% CHANGE NEXT TWO LINES.
\author{Samuel T. Kerr}{Kerr, Samuel T.}

% First is long title of degree (used on cover).
% Second is abbreviation for degree (used in abstract).
% Third is the month the degree was (will be) awarded (used on cover
% and abstract).
% Last is the year the degree was (wlll be) awarded (used on cover
% and abstract).
% The degree title for all doctoral candidates is ``Doctor of Philosophy.''
% The precise degree names for master's candidates appear in the list of
% ``Degrees Offered'' in the Graduate School bulletin.
% The date is the month and year that the degree is actually awarded.
% (If you have registered for ``degree only,'' revise the thesis title
% page to reflect the new date on which the degree is to be awarded.)
% Reference: TM 26--27, 30.
% CHANGE NEXT LINE?
\pudegree{Master of Science}{M.S.}{May}{2012}

% Major professor (used in abstract).
% Use, for example:
%     \majorprof{John Q. Professor}
%     \majorprofs{John Q. Professor and Thomas R. Jones}
%     \majorprofs{John Q. Professor, Thomas R. Jones, and David S. Smith}
% depending on the number of major professors you have.
% CHANGE NEXT LINE.
\majorprof{Elisa Bertino}

% Campus (used only on cover)
% Use one of the following:
%     Fort Wayne
%     Hammond
%     Indianapolis
%     West Lafayette
%     Westville
% Reference: TM 27.
% CHANGE NEXT LINE?
\campus{West Lafayette}

% My command definitions not specific to my thesis.
% CHANGE NEXT LINE?
\input{mydefs}


% My command definitions specific to my thesis.

% CHANGE NEXT LINE TWO LINES?
% Set things up so \margins will show where the margins on the page are.
\newcommand{\margins}{\Repeat{Show where the margins for the page are.}{4}}

% CHANGE NEXT TWO LINES?
% Let typing "\en" be exactly the same as typing "\ensuremath". 
\let\en=\ensuremath

% CHANGE NEXT FIVE LINES?
% Define a \ve command with two arguments, so if it called with
%     \ve an
% it will expand to
%     {\en{a_1},~\en{a_2},\ \ldots,~\en{a_{n}}}
\newcommand{\ve}[2]{\en{#1_1},~\en{#1_2},\ \ldots,~\en{#1_{#2}}}


% To LaTeX only some parts of your thesis put the
% names of the parts to include here.  For example,
% \includeonly{front} would only process front.tex.
% \includeonly{front,introduction} would only process
% front.tex and introduction.tex.
% To print the final copy of your thesis put a '%'
% in front of the \includeonly command and run LaTeX
% three times to make sure that all cross-references
% are correct.  Then run BibTeX once and LaTeX twice
% more.
% CHANGE NEXT LINE?
%\includeonly{front,introduction}

\begin{document}

% Start a new volume for your thesis.  All theses must have at least one
% volume.  If your thesis is too long to fit in one binder put another
% "\volume" between chapters below.
\volume

% Front matter (dedication, etc.).
\include{front}

% Put chapter \include commands here.
% CHANGE \include{...} COMMANDS BELOW?
\include{introduction}

% Dicuss the nature of physical systems
\include{physicalsystems}

% Describe the cryptographic background
\include{cryptographyoverview}

% Describe PUFs at a general level
\include{pufoverview}

% Discuss the different PUF applications and how they relate to physical system design
%\include{applications}
\include{ROK} % PUF ROK work
\include{PEAR} % PEAR work
\include{DOE} % DOE work

% Summary and/or conclusions are optional but often used.
% The summary and/or conclusions often are the last
% major division(s) of the text.
% Reference: TM 32.
% CHANGE NEXT LINE?
\include{summary}

% Recommendations are optional.
% You may include recommendations as a major division if your
% subject matter and research dictate.
% Reference: TM 32.
% CHANGE NEXT LINE?
%\include{recommendations}

% Appendices are optional.
% Appendices are not necessarily part of every thesis. Appendices are used
% for supplementary illustrative material, original data, computer programs,
% and other material not necessarily appropriate for inclusion within the
% text of your thesis. 
% Reference: TM 33.
% Use "\appendix" for one appendix or "\appendices" for more than one
% appendix.
% CHANGE NEXT 7 LINES?
%\appendices
%\include{demo-citations}
%\include{demo-figures}
%\include{demo-mathematics}
%\include{demo-multicols}
%\include{demo-tables}
%\include{demo-text}

% Bibliography is required if you consulted any outside references.
% Reference: TM 32.
\include{bibliography}

% Notes and footnotes are optional.
% Reference: TM 34.
% I have not implemented this yet.  Mark Senn 2002-06-03
%%\include{notes}

% A vita is optional for masters theses
% and required for doctoral dissertations.
% Reference: TM 13.
% CHANGE NEXT LINE?
%\include{vita}

\end{document}

% LaTeX won't read after the \end{document} command.
% You can put notes to yourself or LaTeX input not
% ready for use here if you'd like.