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Seq-gen simulation parser uses always last sequences as output #212

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DirkMetzler opened this issue Oct 28, 2022 · 2 comments
Open

Seq-gen simulation parser uses always last sequences as output #212

DirkMetzler opened this issue Oct 28, 2022 · 2 comments

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@DirkMetzler
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It seems that the function parse_seqgen_output(...) always assumes that the last sequence(s) is/are the outgroup, disregarding what was specified with feat_outgroup().
@DirkMetzler
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We will fix this soon in the next release. Until then, please make sure that the outgroup is always given as the last population when runnig coala simulations with finite-sites sequence evolution models.

@DirkMetzler
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Current github version of coala now launches an error message if seq_gen simulation is run with a different outgroup than the last population.

@DirkMetzler DirkMetzler reopened this Jan 3, 2023
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@DirkMetzler