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git_primer.html
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<!DOCTYPE html>
<html lang="en"><head>
<script src="git_primer_files/libs/clipboard/clipboard.min.js"></script>
<script src="git_primer_files/libs/quarto-html/tabby.min.js"></script>
<script src="git_primer_files/libs/quarto-html/popper.min.js"></script>
<script src="git_primer_files/libs/quarto-html/tippy.umd.min.js"></script>
<link href="git_primer_files/libs/quarto-html/tippy.css" rel="stylesheet">
<link href="git_primer_files/libs/quarto-html/light-border.css" rel="stylesheet">
<link href="git_primer_files/libs/quarto-html/quarto-html.min.css" rel="stylesheet" data-mode="light">
<link href="git_primer_files/libs/quarto-html/quarto-syntax-highlighting-dark.css" rel="stylesheet" id="quarto-text-highlighting-styles">
<link href="git_primer_files/libs/quarto-contrib/fontawesome6-0.1.0/all.css" rel="stylesheet">
<link href="git_primer_files/libs/quarto-contrib/fontawesome6-0.1.0/latex-fontsize.css" rel="stylesheet"><meta charset="utf-8">
<meta name="generator" content="quarto-1.4.550">
<title>git_primer</title>
<meta name="apple-mobile-web-app-capable" content="yes">
<meta name="apple-mobile-web-app-status-bar-style" content="black-translucent">
<meta name="viewport" content="width=device-width, initial-scale=1.0, maximum-scale=1.0, user-scalable=no, minimal-ui">
<link rel="stylesheet" href="git_primer_files/libs/revealjs/dist/reset.css">
<link rel="stylesheet" href="git_primer_files/libs/revealjs/dist/reveal.css">
<style>
code{white-space: pre-wrap;}
span.smallcaps{font-variant: small-caps;}
div.columns{display: flex; gap: min(4vw, 1.5em);}
div.column{flex: auto; overflow-x: auto;}
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
ul.task-list{list-style: none;}
ul.task-list li input[type="checkbox"] {
width: 0.8em;
margin: 0 0.8em 0.2em -1em; /* quarto-specific, see https://github.com/quarto-dev/quarto-cli/issues/4556 */
vertical-align: middle;
}
</style>
<link rel="stylesheet" href="git_primer_files/libs/revealjs/dist/theme/quarto.css">
<link href="git_primer_files/libs/revealjs/plugin/quarto-line-highlight/line-highlight.css" rel="stylesheet">
<link href="git_primer_files/libs/revealjs/plugin/reveal-menu/menu.css" rel="stylesheet">
<link href="git_primer_files/libs/revealjs/plugin/reveal-menu/quarto-menu.css" rel="stylesheet">
<link href="git_primer_files/libs/revealjs/plugin/quarto-support/footer.css" rel="stylesheet">
<style type="text/css">
.callout {
margin-top: 1em;
margin-bottom: 1em;
border-radius: .25rem;
}
.callout.callout-style-simple {
padding: 0em 0.5em;
border-left: solid #acacac .3rem;
border-right: solid 1px silver;
border-top: solid 1px silver;
border-bottom: solid 1px silver;
display: flex;
}
.callout.callout-style-default {
border-left: solid #acacac .3rem;
border-right: solid 1px silver;
border-top: solid 1px silver;
border-bottom: solid 1px silver;
}
.callout .callout-body-container {
flex-grow: 1;
}
.callout.callout-style-simple .callout-body {
font-size: 1rem;
font-weight: 400;
}
.callout.callout-style-default .callout-body {
font-size: 0.9rem;
font-weight: 400;
}
.callout.callout-titled.callout-style-simple .callout-body {
margin-top: 0.2em;
}
.callout:not(.callout-titled) .callout-body {
display: flex;
}
.callout:not(.no-icon).callout-titled.callout-style-simple .callout-content {
padding-left: 1.6em;
}
.callout.callout-titled .callout-header {
padding-top: 0.2em;
margin-bottom: -0.2em;
}
.callout.callout-titled .callout-title p {
margin-top: 0.5em;
margin-bottom: 0.5em;
}
.callout.callout-titled.callout-style-simple .callout-content p {
margin-top: 0;
}
.callout.callout-titled.callout-style-default .callout-content p {
margin-top: 0.7em;
}
.callout.callout-style-simple div.callout-title {
border-bottom: none;
font-size: .9rem;
font-weight: 600;
opacity: 75%;
}
.callout.callout-style-default div.callout-title {
border-bottom: none;
font-weight: 600;
opacity: 85%;
font-size: 0.9rem;
padding-left: 0.5em;
padding-right: 0.5em;
}
.callout.callout-style-default div.callout-content {
padding-left: 0.5em;
padding-right: 0.5em;
}
.callout.callout-style-simple .callout-icon::before {
height: 1rem;
width: 1rem;
display: inline-block;
content: "";
background-repeat: no-repeat;
background-size: 1rem 1rem;
}
.callout.callout-style-default .callout-icon::before {
height: 0.9rem;
width: 0.9rem;
display: inline-block;
content: "";
background-repeat: no-repeat;
background-size: 0.9rem 0.9rem;
}
.callout-title {
display: flex
}
.callout-icon::before {
margin-top: 1rem;
padding-right: .5rem;
}
.callout.no-icon::before {
display: none !important;
}
.callout.callout-titled .callout-body > .callout-content > :last-child {
padding-bottom: 0.5rem;
margin-bottom: 0;
}
.callout.callout-titled .callout-icon::before {
margin-top: .5rem;
padding-right: .5rem;
}
.callout:not(.callout-titled) .callout-icon::before {
margin-top: 1rem;
padding-right: .5rem;
}
/* Callout Types */
div.callout-note {
border-left-color: #4582ec !important;
}
div.callout-note .callout-icon::before {
background-image: url('data:image/png;base64,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');
}
div.callout-note.callout-style-default .callout-title {
background-color: #dae6fb
}
div.callout-important {
border-left-color: #d9534f !important;
}
div.callout-important .callout-icon::before {
background-image: url('data:image/png;base64,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');
}
div.callout-important.callout-style-default .callout-title {
background-color: #f7dddc
}
div.callout-warning {
border-left-color: #f0ad4e !important;
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<body class="quarto-dark">
<div class="reveal">
<div class="slides">
<section class="slide level2">
<div class="custom_title">
<p>version control with git <span style="color:#f34c26"><i class="fa-brands fa-git-alt fa-1x" aria-label="git-alt"></i></span> and GitHub <span style="color:#74C0FC"><i class="fa-brands fa-github fa-1x" aria-label="github"></i></span></p>
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<div class="cell" data-reveal="true" data-fig-width="10000000" data-layout-align="default">
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<div>
<pre class="mermaid mermaid-js" data-label="opening-slide">%%{init: { 'logLevel': 'debug', 'theme': 'dark' , 'themeVariables': {
'commitLabelFontSize': '16px'
} } }%%
gitGraph
commit id: "initialize"
commit id: "add README"
commit id: "add model"
branch microbial
checkout microbial
commit id: "microbial params"
branch chemistry
checkout chemistry
commit id: "chemistry params"
checkout microbial
merge chemistry
checkout main
merge microbial
commit id: "one-pool model"
</pre>
</div>
</div>
</div>
</div>
</section>
<section id="boykis_on_git" class="slide level2 center" data-menu-title="Vicky Boykis on Git">
<h2></h2>
<img data-src="images/boykis_on_git.png" class="quarto-figure quarto-figure-center r-stretch"></section>
<section id="agenda" class="slide level2" data-menu-title="agenda">
<h2></h2>
<p>AGENDA</p>
<div class="very_small_text">
<p><span style="font-weight:bold; color:yellow;">workflows</span></p>
<ul>
<li><u>Describe</u> various coding workflows</li>
<li><u>Paraphrase</u> how version control workflows facilitate collaboration on code products</li>
</ul>
<p><span style="font-weight:bold; color:yellow;">Git & GitHub</span></p>
<div class="columns">
<div class="column" style="width:40%;">
<ul>
<li><u>Describe</u> the difference between Git and GitHub</li>
<li><u>Navigate</u> GitHub via a web browser</li>
</ul>
</div><div class="column" style="width:50%;">
<ul>
<li><u>Use</u> GitHub to create a new repository</li>
<li><u>Edit</u> a new repository through GitHub’s interface</li>
</ul>
</div>
</div>
<p><span style="font-weight:bold; color:yellow;">RStudio (local <–> cloud)</span></p>
<div class="columns">
<div class="column" style="width:40%;">
<ul>
<li><u>Describe</u> the computer-to-GitHub order of operations</li>
<li><u>Define</u> fundamental Git vocabulary</li>
</ul>
</div><div class="column" style="width:50%;">
<ul>
<li><u>Create</u> a local version-controlled repository that is connected to GitHub</li>
</ul>
</div>
</div>
<p><span style="font-weight:bold; color:yellow;">advanced topics: conflicts, branches, forks</span></p>
<div class="columns">
<div class="column" style="width:40%;">
<ul>
<li><u>Describe</u> the causes of merge conflicts</li>
<li><u>Explain</u> how to avoid merge conflicts</li>
</ul>
</div><div class="column" style="width:50%;">
<ul>
<li><u>Summarise</u> what to do if a merge conflict occurs</li>
</ul>
</div>
</div>
<p><span style="font-weight:bold; color:yellow;">project management: issues, projects, READMEs</span></p>
<p><span style="font-weight:bold; color:yellow;">miscellaneous: data, best practices</span></p>
</div>
</section>
<section id="what_is_it" class="slide level2" data-menu-title="what is it">
<h2></h2>
<p><strong>what it is:</strong></p>
<ul>
<li>an <span style="color:yellow;">open-source</span>, <span style="color:yellow;">distributed</span> version control system designed for <span style="color:yellow;">speed and efficiency</span><sup>1</sup></li>
</ul>
<aside><ol class="aside-footnotes"><li id="fn1"><p><a href="https://speakerdeck.com/schacon/introduction-to-git?slide=13">introduction-to-git</a></p></li></ol></aside></section>
<section id="git_github" class="slide level2 center" data-menu-title="github is not git">
<h2></h2>
<div style="text-align: center;">
<p><span style="color:#f34c26"><i class="fa-brands fa-git-alt fa-5x" aria-label="git-alt"></i></span> <span style="font-size:2em;">!=</span> <span style="color:#74C0FC"><i class="fa-brands fa-github fa-5x" aria-label="github"></i></span></p>
</div>
<p><br></p>
<div class="smaller_text">
<ul>
<li>Git: version control software used to track files in a directory (a repository)
<ul>
<li>Git creates the versioned history of a repository</li>
</ul></li>
<li>GitHub: website that allows users to store their Git repositories and share them with others (i.e., a graphical user interface)</li>
</ul>
</div>
</section>
<section id="not_just_github" class="slide level2 center" data-menu-title="not just github">
<h2></h2>
<div style="text-align: center;">
<p><span style="color:#f34c26"><i class="fa-brands fa-gitlab fa-5x" aria-label="gitlab"></i></span> <span style="color:#74C0FC"><i class="fa-brands fa-github fa-5x" aria-label="github"></i></span> <span style="color:#1d78f3"><i class="fa-brands fa-bitbucket fa-5x" aria-label="bitbucket"></i></span> <span style="font-size:1.6em;">self host</span></p>
</div>
</section>
<section id="git-organization" class="slide level2 smaller">
<h2><span style="color:#f34c26">git</span> organization</h2>
<div class="smaller_text">
<p>the repository (think directory) is the fundamental organizational unit</p>
</div>
<div class="fragment">
<p><i style="color:red;" class="fa-solid fa-ban"></i> <span style="color:red;">do not add repositories to synchronized storage</span></p>
</div>
<div style="background:white; width:40%; display:block; margin-left:auto; margin-right:auto">
<div class="quarto-figure quarto-figure-center">
<figure>
<p><img data-src="images/organization_git.png" class="quarto-figure quarto-figure-center"></p>
</figure>
</div>
</div>
</section>
<section id="agenda-coding" class="slide level2" data-menu-title="agenda-coding">
<h2></h2>
<p>AGENDA</p>
<div class="very_small_text">
<div style="opacity:0.3;">
<p><span style="font-weight:bold; color:yellow;">workflows</span></p>
<ul>
<li><u>Describe</u> various coding workflows</li>
<li><u>Paraphrase</u> how version control workflows facilitate collaboration on code products</li>
</ul>
</div>
<p><span style="font-weight:bold; color:yellow;">Git & GitHub</span></p>
<div class="columns">
<div class="column" style="width:40%;">
<ul>
<li><u>Describe</u> the difference between Git and GitHub</li>
<li><u>Navigate</u> GitHub via a web browser</li>
</ul>
</div><div class="column" style="width:50%;">
<ul>
<li><u>Use</u> GitHub to create a new repository</li>
<li><u>Edit</u> a new repository through GitHub’s interface</li>
</ul>
</div>
</div>
<p><span style="font-weight:bold; color:yellow;">RStudio (local <–> cloud)</span></p>
<div class="columns">
<div class="column" style="width:40%;">
<ul>
<li><u>Describe</u> the computer-to-GitHub order of operations</li>
<li><u>Define</u> fundamental Git vocabulary</li>
</ul>
</div><div class="column" style="width:50%;">
<ul>
<li><u>Create</u> a local version-controlled repository that is connected to GitHub</li>
</ul>
</div>
</div>
<div style="opacity:0.3;">
<p><span style="font-weight:bold; color:yellow;">advanced topics: conflicts, branches, forks</span></p>
<div class="columns">
<div class="column" style="width:40%;">
<ul>
<li><u>Describe</u> the causes of merge conflicts</li>
<li><u>Explain</u> how to avoid merge conflicts</li>
</ul>
</div><div class="column" style="width:50%;">
<ul>
<li><u>Summarise</u> what to do if a merge conflict occurs</li>
</ul>
</div>
</div>
<p><span style="font-weight:bold; color:yellow;">project management: issues, projects, READMEs</span></p>
<p><span style="font-weight:bold; color:yellow;">miscellaneous: data, best practices</span></p>
</div>
</div>
</section>
<section id="agenda-advanced" class="slide level2" data-menu-title="agenda-advanced">
<h2></h2>
<p>AGENDA</p>
<div class="very_small_text">
<div style="opacity:0.3;">
<p><span style="font-weight:bold; color:yellow;">workflows</span></p>
<ul>
<li><u>Describe</u> various coding workflows</li>
<li><u>Paraphrase</u> how version control workflows facilitate collaboration on code products</li>
</ul>
<p><span style="font-weight:bold; color:yellow;">Git & GitHub</span></p>
<div class="columns">
<div class="column" style="width:40%;">
<ul>
<li><u>Describe</u> the difference between Git and GitHub</li>
<li><u>Navigate</u> GitHub via a web browser</li>
</ul>
</div><div class="column" style="width:50%;">
<ul>
<li><u>Use</u> GitHub to create a new repository</li>
<li><u>Edit</u> a new repository through GitHub’s interface</li>
</ul>
</div>
</div>
<p><span style="font-weight:bold; color:yellow;">RStudio (local <–> cloud)</span></p>
<div class="columns">
<div class="column" style="width:40%;">
<ul>
<li><u>Describe</u> the computer-to-GitHub order of operations</li>
<li><u>Define</u> fundamental Git vocabulary</li>
</ul>
</div><div class="column" style="width:50%;">
<ul>
<li><u>Create</u> a local version-controlled repository that is connected to GitHub</li>
</ul>
</div>
</div>
</div>
<p><span style="font-weight:bold; color:yellow;">advanced topics: conflicts, branches, forks</span></p>
<div class="columns">
<div class="column" style="width:40%;">
<ul>
<li><u>Describe</u> the causes of merge conflicts</li>
<li><u>Explain</u> how to avoid merge conflicts</li>
</ul>
</div><div class="column" style="width:50%;">
<ul>
<li><u>Summarise</u> what to do if a merge conflict occurs</li>
</ul>
</div>
</div>
<div style="opacity:0.3;">
<p><span style="font-weight:bold; color:yellow;">project management: issues, projects, READMEs</span></p>
<p><span style="font-weight:bold; color:yellow;">miscellaneous: data, best practices</span></p>
</div>
</div>
<p>:::</p>
</section>
<section id="github-organization" class="slide level2">
<h2><span style="color:#74C0FC">GitHub</span> organization</h2>
<div style="font-size:0.6em;">
<ul>
<li>repositories can be <span style="color:yellow">public</span> (controlled write access) or <span style="color:yellow">private</span> (controlled read access)</li>
<li>repository owner can provide write access to other accounts</li>
<li><span style="color:yellow">organizations</span> can link many accounts
<ul>
<li>accounts within organizations can be organized into <span style="color:yellow">teams</span> for additional organization and access control</li>
</ul></li>
</ul>
</div>
<div style="background:white; width:80%; display:block; margin-left:auto; margin-right:auto">
<div class="quarto-figure quarto-figure-center">
<figure>
<p><img data-src="images/organization_github.png" class="quarto-figure quarto-figure-center"></p>
</figure>
</div>
</div>
</section>
<section id="workflows-conflicts" class="slide level2">
<h2>workflows: conflicts <i style="color:red;" class="fa-solid fa-code-merge"></i></h2>
<p><span style="color:yellow;">workflows within groups</span></p>
<img data-src="images/git_team.png" class="quarto-figure quarto-figure-center r-stretch" style="background:white;"></section>
<section id="workflows-branches" class="slide level2">
<h2>workflows: branches <i style="color:blue;" class="fa-solid fa-code-branch"></i></h2>
</section>
<section id="workflows-forks" class="slide level2">
<h2>workflows: forks <i style="color:grey;" class="fa-solid fa-code-fork"></i></h2>
<img data-src="images/git_team.png" class="quarto-figure quarto-figure-center r-stretch" style="background:white;"></section>
<section id="workflows-forks-1" class="slide level2">
<h2>workflows: forks <i style="color:grey;" class="fa-solid fa-code-fork"></i></h2>
<div style="background:white;">
<div class="quarto-layout-panel" data-layout-ncol="3">
<div class="quarto-layout-row">
<div class="quarto-layout-cell" style="flex-basis: 33.3%;justify-content: center;">
<p><img data-src="images/fork.png" style="width:100.0%"></p>
</div>
<div class="fragment quarto-layout-cell" style="flex-basis: 33.3%;justify-content: center;">
<p><img data-src="images/cannot_push_fork.png" style="width:100.0%"></p>
</div>
<div class="fragment quarto-layout-cell" style="flex-basis: 33.3%;justify-content: center;">
<p><img data-src="images/git_team_pull.png" style="width:100.0%"></p>
</div>
</div>
</div>
</div>
</section>
<section id="agenda-project_management" class="slide level2" data-menu-title="agenda-project_management">
<h2></h2>
<p>AGENDA</p>
<div class="very_small_text">
<div style="opacity:0.3;">
<p><span style="font-weight:bold; color:yellow;">workflows</span></p>
<ul>
<li><u>Describe</u> various coding workflows</li>
<li><u>Paraphrase</u> how version control workflows facilitate collaboration on code products</li>
</ul>
<p><span style="font-weight:bold; color:yellow;">Git & GitHub</span></p>
<div class="columns">
<div class="column" style="width:40%;">
<ul>
<li><u>Describe</u> the difference between Git and GitHub</li>
<li><u>Navigate</u> GitHub via a web browser</li>
</ul>
</div><div class="column" style="width:50%;">
<ul>
<li><u>Use</u> GitHub to create a new repository</li>
<li><u>Edit</u> a new repository through GitHub’s interface</li>
</ul>
</div>
</div>
<p><span style="font-weight:bold; color:yellow;">RStudio (local <–> cloud)</span></p>
<div class="columns">
<div class="column" style="width:40%;">
<ul>
<li><u>Describe</u> the computer-to-GitHub order of operations</li>
<li><u>Define</u> fundamental Git vocabulary</li>
</ul>
</div><div class="column" style="width:50%;">
<ul>
<li><u>Create</u> a local version-controlled repository that is connected to GitHub</li>
</ul>
</div>
</div>
<p><span style="font-weight:bold; color:yellow;">advanced topics: conflicts, branches, forks</span></p>
<div class="columns">
<div class="column" style="width:40%;">
<ul>
<li><u>Describe</u> the causes of merge conflicts</li>
<li><u>Explain</u> how to avoid merge conflicts</li>
</ul>
</div><div class="column" style="width:50%;">
<ul>
<li><u>Summarise</u> what to do if a merge conflict occurs</li>
</ul>
</div>
</div>
</div>
<p><span style="font-weight:bold; color:yellow;">project management: issues, projects, READMEs</span></p>
<div style="opacity:0.3;">
<p><span style="font-weight:bold; color:yellow;">miscellaneous: data, best practices</span></p>
</div>
</div>
<p>:::</p>
</section>
<section id="agenda-best_practices" class="slide level2" data-menu-title="agenda-best_practices">
<h2></h2>
<p>AGENDA</p>
<div class="very_small_text">
<div style="opacity:0.3;">
<p><span style="font-weight:bold; color:yellow;">workflows</span></p>
<ul>
<li><u>Describe</u> various coding workflows</li>
<li><u>Paraphrase</u> how version control workflows facilitate collaboration on code products</li>
</ul>
<p><span style="font-weight:bold; color:yellow;">Git & GitHub</span></p>
<div class="columns">
<div class="column" style="width:40%;">
<ul>
<li><u>Describe</u> the difference between Git and GitHub</li>
<li><u>Navigate</u> GitHub via a web browser</li>
</ul>
</div><div class="column" style="width:50%;">
<ul>
<li><u>Use</u> GitHub to create a new repository</li>
<li><u>Edit</u> a new repository through GitHub’s interface</li>
</ul>
</div>
</div>
<p><span style="font-weight:bold; color:yellow;">RStudio (local <–> cloud)</span></p>
<div class="columns">
<div class="column" style="width:40%;">
<ul>
<li><u>Describe</u> the computer-to-GitHub order of operations</li>
<li><u>Define</u> fundamental Git vocabulary</li>
</ul>
</div><div class="column" style="width:50%;">
<ul>
<li><u>Create</u> a local version-controlled repository that is connected to GitHub</li>
</ul>
</div>
</div>
<p><span style="font-weight:bold; color:yellow;">advanced topics: conflicts, branches, forks</span></p>
<div class="columns">
<div class="column" style="width:40%;">
<ul>
<li><u>Describe</u> the causes of merge conflicts</li>
<li><u>Explain</u> how to avoid merge conflicts</li>
</ul>
</div><div class="column" style="width:50%;">
<ul>
<li><u>Summarise</u> what to do if a merge conflict occurs</li>
</ul>
</div>
</div>
<p><span style="font-weight:bold; color:yellow;">project management: issues, projects, READMEs</span></p>
</div>
<p><span style="font-weight:bold; color:yellow;">miscellaneous: data, best practices</span></p>
</div>
</section>
<section id="bps-the-data" class="slide level2 center">
<h2>BPs: the data</h2>
<img data-src="images/workflow-no-server.png" class="quarto-figure quarto-figure-center r-stretch" style="width:80.0%"></section>
<section id="bps-file-types" class="slide level2">
<h2>BPs: file types</h2>
</section>
<section id="bps-commit-messages2" class="slide level2">
<h2>BPs: commit messages<sup>1</sup></h2>
<div class="r-stack">
<div class="quarto-figure quarto-figure-center">
<figure>
<p><img data-src="images/commit_message_prefixes.png" class="quarto-figure quarto-figure-center" style="width:100.0%"></p>
</figure>
</div>
</div>
<p><span style="font-style:italic; font-size: 0.8em; color:yellow; text-align:center;">feat: change reference from child development lab to child study lab</span></p>
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<div class="footer footer-default">
</div>
</div>
<aside><ol class="aside-footnotes"><li id="fn2"><p><a href="https://www.conventionalcommits.org/en/v1.0.0/">www.conventionalcommits.org</a></p></li></ol></aside></section>
</div>
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