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👷 build(All): Release 3.0 stable version
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‎README.md‎

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# onFHIR FHIR Repository
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[![Maven Central](https://maven-badges.herokuapp.com/maven-central/io.onfhir/onfhir-core/badge.svg)](https://search.maven.org/search?q=io.onfhir)
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[![License: GPL v3](https://img.shields.io/badge/License-GPLv3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0)
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[onFHIR](http://onfhir.io) is a FHIR compliant secure health data repository that you can use as a central data service for your FHIR compliant healthcare applications.
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You can use it as a standalone server, or you can extend it with your further custom FHIR Operations to build your own application layer in addition to having standard FHIR repository capabilities.
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onFhir.io is using FHIR Infrastructure Resource definitions (CapabilityStatement, StructureDefinition, SearchParameter, etc) to tailor
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onFHIR.io is using FHIR Infrastructure Resource definitions (CapabilityStatement, StructureDefinition, SearchParameter, etc.) to tailor
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the FHIR server to your specific FHIR capabilities you required; resource profiles, search parameters, FHIR interactions you wanted to support.
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It is implemented with Scala, based on Akka and MongoDB.
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It is implemented with Scala, based on Akka and MongoDB.
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Stable versions are released in [Maven Central](https://search.maven.org/search?q=io.onfhir) and snapshot versions in [Sonatype Snapshot Repository](https://oss.sonatype.org/content/repositories/snapshots/io/onfhir/).
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## Basic Configuration
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You can copy and update **onfhir-core/src/main/resources/application.conf** file, which is the entrypoint configuration to configure onFHIR repository based on your needs.
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For configuration of the FHIR API to be provided, you need to provide the followings;
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* A file providing your **Conformance statement** (FHIR Capability Statement - See http://hl7.org/fhir/capabilitystatement.html) that describes the capabilities of the FHIR server you want to provide
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* A folder including all your **Profile definitions** (FHIR StructureDefinition - See http://hl7.org/fhir/structuredefinition.html) including resource, data type and extension definitions that will be used in the FHIR server you want to provide
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* A folder including all your **Compartment definitions** (FHIR CompartmentDefinition - See http://hl7.org/fhir/2016Sep/compartmentdefinition.html) for all compartments that you want to support for search
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* A folder including all your **Compartment definitions** (FHIR CompartmentDefinition - See http://hl7.org/fhir/compartmentdefinition.html) for all compartments that you want to support for search
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* A folder including all your **Search parameter definitions** (FHIR SearchParameter - See http://hl7.org/fhir/searchparameter.html) for all extra search parameters (apart from what is available from the base FHIR standard) that you define and support for your resources
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* A folder including all your **Value sets** (FHIR ValueSet - See http://hl7.org/fhir/valueset.html) that you define and refer in your resource profiles
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* A folder including all your **Operation definitions** (FHIR OperationDefinition - http://hl7.org/fhir/operationdefinition.html) that you define and refer from capability statement in operations part (For your OperationDefinitions write the full class path of your implementation of operation in OperationDefinition.name)

‎pom.xml‎

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<artifactId>fhir-repository</artifactId>
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<packaging>pom</packaging>
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<version>3.0</version>
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<name>OnFHIR Secure FHIR Repository</name>
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<description>onFHIR is an HL7 FHIR compliant secure, high-performance and scalable health data repository that can be used as the central data service for HL7 FHIR compliant healthcare applications.</description>
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<url>https://onfhir.io</url>
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<licenses>
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<license>
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<name>GNU General Public License v3.0</name>
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<url>https://www.gnu.org/licenses/gpl-3.0.en.html</url>
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</license>
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</licenses>
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<developers>
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<developer>
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<id>tnamli</id>
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<name>Tuncay Namlı</name>
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<email>[email protected]</email>
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<organization>SRDC Corp.</organization>
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<organizationUrl>https://www.srdc.com.tr</organizationUrl>
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</developer>
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<developer>
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<id>msfyuksel</id>
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<name>Mustafa Yüksel</name>
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<email>[email protected]</email>
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<organization>SRDC Corp.</organization>
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<organizationUrl>https://www.srdc.com.tr</organizationUrl>
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</developer>
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<developer>
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<id>sinaci</id>
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<name>Ali Anıl Sınacı</name>
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<email>[email protected]</email>
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<organization>SRDC Corp.</organization>
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<organizationUrl>https://www.srdc.com.tr</organizationUrl>
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</developer>
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<developer>
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<id>postaci</id>
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<name>Şenan Postacı</name>
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<email>[email protected]</email>
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<organization>SRDC Corp.</organization>
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<organizationUrl>https://www.srdc.com.tr</organizationUrl>
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</developer>
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<developer>
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<id>ozankose1992</id>
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<name>Ozan Köse</name>
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<email>[email protected]</email>
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</developer>
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</developers>
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<scm>
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<connection>scm:git:git://github.com/srdc/onfhir.git</connection>
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<developerConnection>scm:git:ssh://github.com:srdc/onfhir.git</developerConnection>
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<url>https://github.com/srdc/onfhir/tree/master</url>
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</scm>
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<modules>
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<module>onfhir-common</module>
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<module>onfhir-core</module>
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<module>onfhir-path</module>
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<module>onfhir-validation</module>
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</modules>
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<name>Onfhir Secure FHIR Repository</name>
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<repositories>
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<repository>
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<!--repository>
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<id>maven-releases</id>
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<url>http://nexus.srdc.com.tr/repository/maven-releases/</url>
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</repository>
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<repository>
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<id>maven-snapshots</id>
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<url>http://nexus.srdc.com.tr/repository/maven-snapshots/</url>
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</repository>
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</repository-->
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<repository>
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<id>oss-snapshots</id>
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<snapshots>
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<nimbus-jose.version>7.9</nimbus-jose.version>
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<nimbus-oidc.version>5.22</nimbus-oidc.version>
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<apache-commons-io.version>2.6</apache-commons-io.version>
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<!-- release plugin versions -->
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<version.plugin.source>3.2.1</version.plugin.source>
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<version.plugin.javadoc>3.2.0</version.plugin.javadoc>
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<version.plugin.gpg>1.6</version.plugin.gpg>
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<version.plugin.nexus-staging>1.6.8</version.plugin.nexus-staging>
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</properties>
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<build>
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<artifactId>maven-compiler-plugin</artifactId>
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<version>3.8.1</version>
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</plugin>
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-source-plugin</artifactId>
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<version>${version.plugin.source}</version>
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</plugin>
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-javadoc-plugin</artifactId>
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<version>${version.plugin.javadoc}</version>
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</plugin>
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-gpg-plugin</artifactId>
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<version>${version.plugin.gpg}</version>
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</plugin>
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<plugin>
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<groupId>org.sonatype.plugins</groupId>
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<artifactId>nexus-staging-maven-plugin</artifactId>
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<version>${version.plugin.nexus-staging}</version>
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</plugin>
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</plugins>
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</pluginManagement>
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</build>
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<profiles>
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<profile>
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<id>release</id>
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<activation>
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<property>
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<name>gpg.passphrase</name>
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</property>
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</activation>
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<build>
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<plugins>
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-source-plugin</artifactId>
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<executions>
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<execution>
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<id>attach-source</id>
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<phase>compile</phase>
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<goals>
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<goal>jar-no-fork</goal>
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</goals>
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</execution>
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</executions>
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</plugin>
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<plugin>
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<groupId>net.alchim31.maven</groupId>
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<artifactId>scala-maven-plugin</artifactId>
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<executions>
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<execution>
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<id>attach-javadocs</id>
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<goals>
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<goal>doc-jar</goal>
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</goals>
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</execution>
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</executions>
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</plugin>
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-gpg-plugin</artifactId>
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<executions>
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<execution>
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<id>sign-artifacts</id>
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<phase>verify</phase>
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<goals>
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<goal>sign</goal>
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</goals>
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<configuration>
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<gpgArguments>
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<arg>--pinentry-mode</arg>
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<arg>loopback</arg>
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</gpgArguments>
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</configuration>
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</execution>
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</executions>
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</plugin>
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<plugin>
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<groupId>org.sonatype.plugins</groupId>
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<artifactId>nexus-staging-maven-plugin</artifactId>
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<extensions>true</extensions>
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<configuration>
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<serverId>ossrh</serverId>
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<nexusUrl>https://oss.sonatype.org/</nexusUrl>
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<autoReleaseAfterClose>false</autoReleaseAfterClose>
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</configuration>
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</plugin>
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</plugins>
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</build>
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</profile>
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</profiles>
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<dependencyManagement>
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<dependencies>
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<!-- Scala Language -->
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</dependencies>
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<distributionManagement>
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<snapshotRepository>
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<id>ossrh</id>
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<name>Sonatype Nexus Snapshots</name>
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<url>https://oss.sonatype.org/content/repositories/snapshots</url>
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</snapshotRepository>
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<repository>
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<id>ossrh</id>
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<name>Nexus Release Repository</name>
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<url>https://oss.sonatype.org/service/local/staging/deploy/maven2</url>
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</repository>
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</distributionManagement>
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<!--distributionManagement>
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<id>maven-snapshots</id>
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<url>https://nexus.srdc.com.tr/repository/maven-snapshots/</url>
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<id>maven-releases</id>
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<url>https://nexus.srdc.com.tr/repository/maven-releases/</url>
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</distributionManagement>
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</distributionManagement-->
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<!--repositories>
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<repository>
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<id>local-repo</id>
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<name>Local JAR Repository</name>
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<url>file://${project.basedir}/lib</url>
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</repository>
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</repositories-->
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</project>

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