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removed vcf files not used in analysis

Mar 31, 2023

c06e99d · Mar 31, 2023

Name		Name	Last commit message	Last commit date
parent directory ..
archive		archive	cleaned up repo after publication. Includes moving old code that wasn…	Mar 27, 2023
.gitignore		.gitignore	reran analysis using NA values for instances not meeting 5x coverage …	Jan 5, 2023
Afilt32m70_01_pp90.vcf		Afilt32m70_01_pp90.vcf	rearranged headers	Feb 4, 2020
Afilt32m70_01_pp90_m75.recode.vcf		Afilt32m70_01_pp90_m75.recode.vcf	rearranged headers	Feb 4, 2020
HCSS_Afilt32m70_01_pp90.vcf		HCSS_Afilt32m70_01_pp90.vcf	rearranged headers	Feb 4, 2020
HCSS_Afilt32m70_01_pp90_m75.recode.vcf		HCSS_Afilt32m70_01_pp90_m75.recode.vcf	rearranged headers	Feb 4, 2020
Olurida_v081_100000.fa		Olurida_v081_100000.fa	pls	Jun 23, 2022
mbd_size.csv		mbd_size.csv	Added weight/length matrix	Jul 31, 2019
population-origin-coordinates.csv		population-origin-coordinates.csv	prepping for presentation	Feb 6, 2020
sample-key.csv		sample-key.csv	added sample number to distance matrices dataframes	May 9, 2019
sample-sites-map.pdf		sample-sites-map.pdf	knitted DMG notebook	May 21, 2020
zr1394_all_s456_10x.bedgraph		zr1394_all_s456_10x.bedgraph	commit includes all methylation landscape analyses, revised annotatio…	Jul 29, 2020
zr1394_all_s456_10x.tab		zr1394_all_s456_10x.tab	commit includes all methylation landscape analyses, revised annotatio…	Jul 29, 2020
zr1394_all_s456_5x.bedgraph		zr1394_all_s456_5x.bedgraph	commit includes all methylation landscape analyses, revised annotatio…	Jul 29, 2020
zr1394_all_s456_5x.tab		zr1394_all_s456_5x.tab	commit includes all methylation landscape analyses, revised annotatio…	Jul 29, 2020