Prepare human

[mr-eyes]

CHM13V2 T2T Assembly

wget https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/914/755/GCF_009914755.1_T2T-CHM13v2.0/GCF_009914755.1_T2T-CHM13v2.0_genomic.fna.gz
snipe sketch --ref GCF_009914755.1_T2T-CHM13v2.0_genomic.fna.gz -k 51 --scale 10000 -n chm13v2_k51_s10k -o chm13v2_k51_s10k.zip

Sketching genome with ksize=51, scale=10000, cores=4
Autodetected chromosomes:
autosome-1      autosome-3      autosome-2      autosome-4      autosome-5      autosome-6
autosome-8      autosome-7      autosome-9      autosome-10     autosome-11     autosome-12
autosome-13     autosome-14     autosome-15     autosome-16     autosome-19     autosome-17
autosome-18     autosome-20     autosome-21     autosome-22     sex-y   sex-x
Autosomal chromosomes: 22, Sex chromosomes: 2, Mitochondrial: 0
Sketching completed in 23.91 seconds.

md5sum: 55b685514681b8a6bbbaba869c93698d

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rna from genomic

wget https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/914/755/GCF_009914755.1_T2T-CHM13v2.0/GCF_009914755.1_T2T-CHM13v2.0_rna_from_genomic.fna.gz
snipe sketch --amplicon GCF_009914755.1_T2T-CHM13v2.0_rna_from_genomic.fna.gz -k 51 --scale 10000 -n rnafromgenomic_chm13v2_k51_s10k -o rnafromgenomic_chm13v2_k51_s10k.zip

md5sum: 86c034c40cf13d6c2da477033346cfd1

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exome

pending ...

[mr-eyes]

GRCh38.p14

wget https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.40_GRCh38.p14/GCF_000001405.40_GRCh38.p14_genomic.fna.gz
snipe sketch --ref GCF_000001405.40_GRCh38.p14_genomic.fna.gz -k 51 --scale 10000 -n grch38p14_k51_s10k -o grch38p14_k51_s10k.zip

Sketching genome with ksize=51, scale=10000, cores=4
Autodetected chromosomes:
autosome-1	autosome-2	autosome-3	autosome-4	autosome-5	autosome-6	
autosome-7	autosome-8	autosome-9	autosome-10	autosome-11	autosome-13	
autosome-12	autosome-14	autosome-16	autosome-15	autosome-17	autosome-18	
autosome-21	autosome-19	autosome-20	autosome-22	sex-y	sex-x	
mitochondrial-M	
Autosomal chromosomes: 22, Sex chromosomes: 2, Mitochondrial: 1

md5sum: 6ce634d2f2ea057c84b551e96bc13a54

rna

wget https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.40_GRCh38.p14/GCF_000001405.40_GRCh38.p14_rna_from_genomic.fna.gz

snipe sketch --amplicon GCF_000001405.40_GRCh38.p14_rna_from_genomic.fna.gz -k 51 --scale 10000 -n rnafromgenomic_grch38p14_k51_s10k -o rnafromgenomic_grch38p14_k51_s10k.zip

md5sum: 8d42a0ea6a5ba4698cbc522c8723327d