diff --git a/bio/snpeff/annotate/environment.linux-64.pin.txt b/bio/snpeff/annotate/environment.linux-64.pin.txt
index 84888d86abf..013253b05a8 100644
--- a/bio/snpeff/annotate/environment.linux-64.pin.txt
+++ b/bio/snpeff/annotate/environment.linux-64.pin.txt
@@ -4,92 +4,92 @@
 # created-by: conda 24.9.2
 @EXPLICIT
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 https://conda.anaconda.org/conda-forge/linux-64/gsl-2.7-he838d99_0.tar.bz2#fec079ba39c9cca093bf4c00001825de
 https://conda.anaconda.org/conda-forge/linux-64/xorg-libxtst-1.2.5-hb9d3cd8_3.conda#7bbe9a0cc0df0ac5f5a8ad6d6a11af2f
-https://conda.anaconda.org/bioconda/linux-64/bcftools-1.22-h3a4d415_0.tar.bz2#d8e5fb8724fbf98b997824d534100232
+https://conda.anaconda.org/bioconda/linux-64/bcftools-1.22-h3a4d415_1.tar.bz2#ffd6659738d1b06f8d3fa5a3b0604703
 https://conda.anaconda.org/conda-forge/linux-64/cairo-1.18.4-h3394656_0.conda#09262e66b19567aff4f592fb53b28760
-https://conda.anaconda.org/conda-forge/linux-64/harfbuzz-11.2.1-h3beb420_0.conda#0e6e192d4b3d95708ad192d957cf3163
-https://conda.anaconda.org/conda-forge/linux-64/openjdk-23.0.2-h53dfc1b_2.conda#47eea31e0c3f960459237823e5e21a32
-https://conda.anaconda.org/bioconda/noarch/snpeff-5.2-hdfd78af_1.tar.bz2#302ea5c9337b9aea6cc7582df04f180e
+https://conda.anaconda.org/conda-forge/linux-64/harfbuzz-12.1.0-h15599e2_0.conda#7704b1edaa8316b8792424f254c1f586
+https://conda.anaconda.org/conda-forge/linux-64/openjdk-24.0.2-h5755bd7_0.conda#2cb7cefb4a66a25110b0fa8798cb4887
+https://conda.anaconda.org/bioconda/noarch/snpeff-5.3.0a-hdfd78af_1.conda#833573ae1d223dc7161a8cdb888ae97e
diff --git a/bio/snpeff/annotate/environment.yaml b/bio/snpeff/annotate/environment.yaml
index 63f69342003..3afa1e0a258 100644
--- a/bio/snpeff/annotate/environment.yaml
+++ b/bio/snpeff/annotate/environment.yaml
@@ -3,6 +3,6 @@ channels:
   - bioconda
   - nodefaults
 dependencies:
-  - snpeff =5.2
+  - snpeff =5.3.0a
   - bcftools =1.22
-  - snakemake-wrapper-utils =0.7.2
+  - snakemake-wrapper-utils =0.8.0