parallel: flush accumulated data when input data is exhausted

The "parallel" decoder buffers the currently seen data pattern, and
defers annotation emission until the end position is known. Which is
why the last data pattern would not show up in the decoder's output.
See bug #292 and its duplicates for examples and concerns.

Catch the EOFError exception, and flush previously accumulated data.

It is yet to get determined whether a warning annotation is due. Most
probably not for "parallel" which merely visualizes data line states.
But other decoders which have the concept of frames shall NOT follow
this "parallel" decoder's naive approach, and claim that a frame had
completed although its end condition was never seen. Add a developer
TODO comment to raise awareness.

Author: gsigh

decoders/parallel/pd.py

@@ -257,7 +257,10 @@ def decode(self):
         # This results in robust operation for low-oversampled input.
         in_reset = False
         while True:
-            pins = self.wait(conds)
+            try:
+                pins = self.wait(conds)
+            except EOFError as e:
+                break
             clock_edge = cond_idx_clock is not None and self.matched[cond_idx_clock]
             data_edge = cond_idx_data_0 is not None and [idx for idx in range(cond_idx_data_0, cond_idx_data_N) if self.matched[idx]]
             reset_edge = cond_idx_reset is not None and self.matched[cond_idx_reset]
@@ -275,3 +278,8 @@ def decode(self):
                 data_bits = data_bits[:num_item_bits]
                 item = bitpack(data_bits)
                 self.handle_bits(self.samplenum, item, num_item_bits)
+
+        self.handle_bits(self.samplenum, None, num_item_bits)
+        # TODO Determine whether a WARN annotation needs to get emitted.
+        # The decoder has not seen the end of the last accumulated item.
+        # Instead it just ran out of input data.