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Stereo-or-mono-video-annotation-workflows

Workflows including example R scripts for stereo or mono video surveys of fish. With an applied example using the EventMeasure software from www.seagis.com.au

Table of contents

Introduction

Standard Operating Procedures

EventMeasure example

Example data and R scripts

Bibliography

#Introduction

This repository is a work in progress.

Currently it only provides Example data and R scripts.

These R scripts are included in a published paper1, please cite if you use it. Please refer to this GitHub repository for updated versions of the workflow and scripts.

#Standard Operating Procedures

To be updated.

#EventMeasure example

To be updated.

#Example data and R scripts

Also provided is an R workflow example, including scripts, example data and outputs.

#Bibliography

  1. Langlois, T. J., S. J. Newman, M. Cappo, E. S. Harvey, B. M. Rome, C. L. Skepper, and C. B. Wakefield. 2015. Length selectivity of commercial fish traps assessed from in situ comparisons with stereo-video: Is there evidence of sampling bias? Fisheries research 161:145–155.