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This repository was archived by the owner on Oct 16, 2025. It is now read-only.
IMHO we need an shortcut/function to access the colnames of the colData slot.
For the Biobase::ExpressionSet or MSnbase::MSnSet this is fvarLabel (featureData slot).
Any suggestions for a good name?
Are our colData really featureData? If that's the case I would create an alias featureData for colData and would use fvarLabels for colnames(colData(tds)).
IMHO the features of an TopDownSet are the fragments so neither of the typical Biobase::phenoData nor Biobase::featureData fits.