README.md

S5

Scripts related to the S5 project in the Van Bael lab.

• As of 2022-12-15, in press with Frontiers in Soil Science.

• Titled, "Decay of oil residues in the soil is enhanced by the presence of Spartina alterniflora, with no additional effects from microbiome manipulation"

• DOI: 10.3389/fsoil.2022.949439

• Raw Data is available via GRIIDC under the data set UDI: R5x2860000002

• Semiprocessed data for running these scripts can be found at https://github.com/sformel/S5/tree/master/Relevant%20Data

Map of Scripts to Figures - Main Article

• Figure 1: Relative abundance of PAHs Script

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• Figure 2: Plant Biomass Script

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• Figure 3: Live Stem Count Script

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• Figure 4: Prokaryote Composition in Soil Script

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• Figure 5: Fungal Composition in Soil Script

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• Figure 6: Fungal Composition in Roots Script

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• Figure 7: Fungal Composition in Leaves Script

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Map of Scripts to Figures - Supplementary

• Supplementary Figure 1: Site Map Script

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• Supplementary Figure 2: Meoscosm Design

  • Made in Adobe Illustrator, no relevenant code.

• Supplementary Figure 3: Nodes per Stem Script

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• Supplementary Figure 4: Shannon Diversity of Prokaryote Soil Communities Script

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• Supplementary Figure 5: Composition of Phyla in Prokaryote Soil Communities Script

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• Supplementary Figure 6: Shannon Diversity of Fungal Communities Script

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• Supplementary Figure 7: Composition of Phyla in Fungal Soil Communities Script

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• Supplementary Figure 8: Composition of Phyla in Fungal Root Communities Script

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• Supplementary Figure 8: Composition of Phyla in Fungal Leaf Communities Script

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