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Links between the rules peak_tf and compute_ins_chip non-existent #18

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Connorr0 opened this issue Jun 27, 2024 · 1 comment · May be fixed by #22
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Links between the rules peak_tf and compute_ins_chip non-existent #18

Connorr0 opened this issue Jun 27, 2024 · 1 comment · May be fixed by #22
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@jordanc17

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@Connorr0
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In the current version there is no link between the rules peak_tf and compute_ins_chip. This appears to be because peak_tf is now updating the AnnData and compute_ins_chip never receives the output of peak_tf as an input.

This issue can be solved by adding the following to the input for compute_ins_chip:
peak_tf = output_dir + "peak_tf/"
@jordanc17 jordanc17 self-assigned this Nov 6, 2024
@jordanc17 jordanc17 linked a pull request Dec 2, 2024 that will close this issue
link compute_ins_chip to peak_tf #22
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@jordanc17 jordanc17 mentioned this issue Dec 2, 2024
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Will be closed by #22 when merged.

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link compute_ins_chip to peak_tf settylab/atac_metacell_utilities
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@Connorr0 @jordanc17