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tqdm missing from environment.yaml #19

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Connorr0 opened this issue Jun 27, 2024 · 1 comment · May be fixed by #21
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tqdm missing from environment.yaml #19

Connorr0 opened this issue Jun 27, 2024 · 1 comment · May be fixed by #21
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@jordanc17

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@Connorr0
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Upon running the rule peak_tf I received the following error. I checked the environment.yaml file and tqdm was not present in the file.

rule peak_tf:
    input: runV1/peaks.bed, workflow/scripts/peak_tf.py, /fh/fast/setty_m/user/cfinkbei/retina_data/D59/SeaCells/retina_atac_sc_utils_input.h5, runV1/fimo_result
    output: runV1/peak_tf
    jobid: 0
    resources: tmpdir=/loc/scratch/46239289

Traceback (most recent call last):
  File "workflow/scripts/peak_tf.py", line 44, in <module>
    from tqdm.auto import tqdm
ModuleNotFoundError: No module named 'tqdm'
@jordanc17 jordanc17 self-assigned this Nov 6, 2024
@jordanc17 jordanc17 linked a pull request Nov 20, 2024 that will close this issue
Remove defaults channel #21
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@jordanc17
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tqdm is added in the new version of the environment (currently found on the branch env-update).

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Remove defaults channel settylab/atac_metacell_utilities
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@Connorr0 @jordanc17