[pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/biomejs/pre-commit: v2.5.3 → v2.5.14](biomejs/pre-commit@v2.5.3...v2.5.14)
- [github.com/tox-dev/pyproject-fmt: v2.25.3 → v2.29.4](tox-dev/pyproject-fmt@v2.25.3...v2.29.4)
- [github.com/astral-sh/ruff-pre-commit: v0.15.21 → v0.16.9](astral-sh/ruff-pre-commit@v0.15.21...v0.16.9)
- [github.com/pre-commit/mirrors-mypy: v2.1.0 → v2.3.1](pre-commit/mirrors-mypy@v2.1.0...v2.3.1)
- [github.com/zizmorcore/zizmor-pre-commit: v1.24.1 → v1.30.1](zizmorcore/zizmor-pre-commit@v1.24.1...v1.30.1)

Author: pre-commit-ci[bot]

.pre-commit-config.yaml

@@ -7,16 +7,16 @@ default_stages:
 minimum_pre_commit_version: 2.16.0
 repos:
   - repo: https://github.com/biomejs/pre-commit
-    rev: v2.5.3
+    rev: v2.5.14
     hooks:
       - id: biome-format
         exclude: ^\.cruft\.json$ # inconsistent indentation with cruft - file never to be modified manually.
   - repo: https://github.com/tox-dev/pyproject-fmt
-    rev: v2.25.3
+    rev: v2.29.4
     hooks:
       - id: pyproject-fmt
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.15.21
+    rev: v0.16.9
     hooks:
       - id: ruff-check
         types_or: [python, pyi, jupyter]
@@ -38,15 +38,15 @@ repos:
         args: [--assume-in-merge]
 
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v2.1.0
+    rev: v2.3.1
     hooks:
       - id: mypy
         pass_filenames: false
         args: [src/pydeseq2, --ignore-missing-imports]
         additional_dependencies: [pandas-stubs, scipy-stubs]
 
   - repo: https://github.com/zizmorcore/zizmor-pre-commit
-    rev: v1.24.1
+    rev: v1.30.1
     hooks:
       - id: zizmor
         args: [--no-progress, --fix]