diff --git a/source/heavy/computing.rst b/source/heavy/computing.rst index aa8e30a..fefade0 100644 --- a/source/heavy/computing.rst +++ b/source/heavy/computing.rst @@ -65,7 +65,8 @@ Using Compute Canada for the first time # User specific aliases and functions - module load java/1.8.0_192 singularity/3.5 + module load java/11.0.2 + module load singularity #export PATH=$PATH:/home/USER/scripts # if you have scripts export PATH=$PATH:$HOME/nextflow diff --git a/source/tools/tractoflow.rst b/source/tools/tractoflow.rst index 8d1ca54..715b1c3 100644 --- a/source/tools/tractoflow.rst +++ b/source/tools/tractoflow.rst @@ -79,8 +79,8 @@ Using Tractoflow on Compute Canada # - Interface seeding # - nbr_seeds 15. my_singularity_img='../tractoflow_*.img' # or .sif - nextflow -c ../beluga.conf run ../tractoflow-*/main.nf --root ../input_data_tractoflow \ - -with-singularity $my_singularity_img -resume -with-report report.html \ + nextflow -c ../beluga.conf run ../tractoflow-*/main.nf --input ../input_data_tractoflow \ + -with-singularity ../tractoflow_*.img -resume -with-report report.html \ --dti_shells "0 1500" --fodf_shells "0 1500" --step 0.5 --nbr_seeds 15 \ --wm_seeding false --mean_frf false --set_frf true