Incompatibility with Numpy >= 2

[pablormier]

Omnipath fails using numpy >= 2. I get the following error when importing:

ckages/numpy/__init__.py", line 410, in __getattr__
    raise AttributeError("module {!r} has no attribute "
AttributeError: module 'numpy' has no attribute 'NAN'. Did you mean: 'nan'?

Comes from:

  from omnipath._misc import dtypes
  File "/miniforge3/envs/corneto/lib/python3.12/site-packages/omnipath/_misc/dtypes.py", line 11, in <module>
    NA = frozenset(("na", "NA", "NaN", "none", "None", None, pd.NA, pd.NaT, np.NAN, np.nan))

[jhaberbe]

Same, I just removed np.NAN.

[deeenes]

This has been fixed already in June (2dfecfd), we should do a version bump and push to PyPI (as also requested in #56). I'll do that soon.

[JureZmrzlikar]

This has been fixed already in June (2dfecfd), we should do a version bump and push to PyPI (as also requested in #56). I'll do that soon.

Ping @deeenes . :-) I would be very happy if you could release this to Pypi... Or at least estimate until when this will be done.

[PauBadiaM]

@deeenes same for me! 🙏

[CowanCS1]

I also just hit this. Easy enough to fix, but for reproducibility downstream it would be nice to have that version bump.