main.yml

name: build

on:
  push:
    branches: [ dev ]

jobs:
  build-linux:

    runs-on: ubuntu-latest

    steps:
    - uses: mamba-org/setup-micromamba@v1
      with:
        micromamba-version: '1.5.6-0' # any version from https://github.com/mamba-org/micromamba-releases
        environment-file: etc/environment.yml
        init-shell: >-
          bash
        cache-environment: true
        post-cleanup: 'all'
    - name: Install additional dependencies
      run: |
        pip install git+https://github.com/saezlab/corneto.git@dev .
    - name: Lint with flake8
      run: |
        # stop the build if there are Python syntax errors or undefined names
        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
    - name: Test and add coverage
      run: |
        pytest --cov --disable-warnings networkcommons