update docs

Author: cboettig

DESCRIPTION

@@ -87,7 +87,7 @@ Collate:
     'tbl_df.R'
     'utils.R'
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 6.1.1
+RoxygenNote: 7.0.2
 X-schema.org-applicationCategory: Data Publication
 X-schema.org-keywords: metadata, nexml, phylogenetics, linked-data
 X-schema.org-isPartOf: https://ropensci.org

R/nexml_write.R

@@ -32,6 +32,7 @@
 #'  nexml <- add_basic_meta(title="my title", creator = "Carl Boettiger", nexml = nexml)
 #'  nexml <- add_meta(meta("prism:modificationDate", format(Sys.Date())), nexml = nexml)
 #'
+#'  ex <- tempfile(fileext=".xml")
 #'  write.nexml(nexml, file=ex)
 #'
 #'  ## As above, but in one call (except for add_meta() call).  

R/taxize_nexml.R

@@ -21,7 +21,7 @@ taxize_nexml <- function(nexml,
                          warnings = TRUE,
                          ...){
 
-  ## Soft dependency on taxize
+  ## Soft dependency on taxadb
   if (!requireNamespace("taxadb", quietly = TRUE)) {
     stop("taxadb package required to convert look up taxonomic ids",
          call. = FALSE)