_lowrank.py

"""Implement various linear algebra algorithms for low rank matrices.
"""

__all__ = ['svd_lowrank', 'pca_lowrank']

from torch import Tensor
import torch
from . import _linalg_utils as _utils
from .overrides import has_torch_function, handle_torch_function

from typing import Optional, Tuple

def get_approximate_basis(A: Tensor,
                          q: int,
                          niter: Optional[int] = 2,
                          M: Optional[Tensor] = None
                          ) -> Tensor:
    """Return tensor :math:`Q` with :math:`q` orthonormal columns such
    that :math:`Q Q^H A` approximates :math:`A`. If :math:`M` is
    specified, then :math:`Q` is such that :math:`Q Q^H (A - M)`
    approximates :math:`A - M`.

    .. note:: The implementation is based on the Algorithm 4.4 from
              Halko et al, 2009.

    .. note:: For an adequate approximation of a k-rank matrix
              :math:`A`, where k is not known in advance but could be
              estimated, the number of :math:`Q` columns, q, can be
              choosen according to the following criteria: in general,
              :math:`k <= q <= min(2*k, m, n)`. For large low-rank
              matrices, take :math:`q = k + 5..10`.  If k is
              relatively small compared to :math:`min(m, n)`, choosing
              :math:`q = k + 0..2` may be sufficient.

    .. note:: To obtain repeatable results, reset the seed for the
              pseudorandom number generator

    Args::
        A (Tensor): the input tensor of size :math:`(*, m, n)`

        q (int): the dimension of subspace spanned by :math:`Q`
                 columns.

        niter (int, optional): the number of subspace iterations to
                               conduct; ``niter`` must be a
                               nonnegative integer. In most cases, the
                               default value 2 is more than enough.

        M (Tensor, optional): the input tensor's mean of size
                              :math:`(*, 1, n)`.

    References::
        - Nathan Halko, Per-Gunnar Martinsson, and Joel Tropp, Finding
          structure with randomness: probabilistic algorithms for
          constructing approximate matrix decompositions,
          arXiv:0909.4061 [math.NA; math.PR], 2009 (available at
          `arXiv <http://arxiv.org/abs/0909.4061>`_).
    """

    niter = 2 if niter is None else niter
    m, n = A.shape[-2:]
    dtype = _utils.get_floating_dtype(A)
    matmul = _utils.matmul

    R = torch.randn(n, q, dtype=dtype, device=A.device)

    A_H = _utils.transjugate(A)
    if M is None:
        (Q, _) = matmul(A, R).qr()
        for i in range(niter):
            (Q, _) = matmul(A_H, Q).qr()
            (Q, _) = matmul(A, Q).qr()
    else:
        M_H = _utils.transjugate(M)
        (Q, _) = (matmul(A, R) - matmul(M, R)).qr()
        for i in range(niter):
            (Q, _) = (matmul(A_H, Q) - matmul(M_H, Q)).qr()
            (Q, _) = (matmul(A, Q) - matmul(M, Q)).qr()

    return Q


def svd_lowrank(A: Tensor, q: Optional[int] = 6, niter: Optional[int] = 2,
                M: Optional[Tensor] = None) -> Tuple[Tensor, Tensor, Tensor]:
    r"""Return the singular value decomposition ``(U, S, V)`` of a matrix,
    batches of matrices, or a sparse matrix :math:`A` such that
    :math:`A \approx U diag(S) V^T`. In case :math:`M` is given, then
    SVD is computed for the matrix :math:`A - M`.

    .. note:: The implementation is based on the Algorithm 5.1 from
              Halko et al, 2009.

    .. note:: To obtain repeatable results, reset the seed for the
              pseudorandom number generator

    .. note:: The input is assumed to be a low-rank matrix.

    .. note:: In general, use the full-rank SVD implementation
              ``torch.svd`` for dense matrices due to its 10-fold
              higher performance characteristics. The low-rank SVD
              will be useful for huge sparse matrices that
              ``torch.svd`` cannot handle.

    Args::
        A (Tensor): the input tensor of size :math:`(*, m, n)`

        q (int, optional): a slightly overestimated rank of A.

        niter (int, optional): the number of subspace iterations to
                               conduct; niter must be a nonnegative
                               integer, and defaults to 2

        M (Tensor, optional): the input tensor's mean of size
                              :math:`(*, 1, n)`.

    References::
        - Nathan Halko, Per-Gunnar Martinsson, and Joel Tropp, Finding
          structure with randomness: probabilistic algorithms for
          constructing approximate matrix decompositions,
          arXiv:0909.4061 [math.NA; math.PR], 2009 (available at
          `arXiv <https://arxiv.org/abs/0909.4061>`_).

    """
    if not torch.jit.is_scripting():
        tensor_ops = (A, M)
        if (not set(map(type, tensor_ops)).issubset((torch.Tensor, type(None))) and has_torch_function(tensor_ops)):
            return handle_torch_function(svd_lowrank, tensor_ops, A, q=q, niter=niter, M=M)
    return _svd_lowrank(A, q=q, niter=niter, M=M)


def _svd_lowrank(A: Tensor, q: Optional[int] = 6, niter: Optional[int] = 2,
                 M: Optional[Tensor] = None) -> Tuple[Tensor, Tensor, Tensor]:
    q = 6 if q is None else q
    m, n = A.shape[-2:]
    matmul = _utils.matmul
    if M is None:
        M_t = None
    else:
        M_t = _utils.transpose(M)
    A_t = _utils.transpose(A)

    # Algorithm 5.1 in Halko et al 2009, slightly modified to reduce
    # the number conjugate and transpose operations
    if m < n or n > q:
        # computing the SVD approximation of a transpose in
        # order to keep B shape minimal (the m < n case) or the V
        # shape small (the n > q case)
        Q = get_approximate_basis(A_t, q, niter=niter, M=M_t)
        Q_c = _utils.conjugate(Q)
        if M is None:
            B_t = matmul(A, Q_c)
        else:
            B_t = matmul(A, Q_c) - matmul(M, Q_c)
        assert B_t.shape[-2] == m, (B_t.shape, m)
        assert B_t.shape[-1] == q, (B_t.shape, q)
        assert B_t.shape[-1] <= B_t.shape[-2], B_t.shape
        U, S, V = torch.svd(B_t)
        V = Q.matmul(V)
    else:
        Q = get_approximate_basis(A, q, niter=niter, M=M)
        Q_c = _utils.conjugate(Q)
        if M is None:
            B = matmul(A_t, Q_c)
        else:
            B = matmul(A_t, Q_c) - matmul(M_t, Q_c)
        B_t = _utils.transpose(B)
        assert B_t.shape[-2] == q, (B_t.shape, q)
        assert B_t.shape[-1] == n, (B_t.shape, n)
        assert B_t.shape[-1] <= B_t.shape[-2], B_t.shape
        U, S, V = torch.svd(B_t)
        U = Q.matmul(U)

    return U, S, V


def pca_lowrank(A: Tensor, q: Optional[int] = None, center: bool = True,
                niter: int = 2) -> Tuple[Tensor, Tensor, Tensor]:
    r"""Performs linear Principal Component Analysis (PCA) on a low-rank
    matrix, batches of such matrices, or sparse matrix.

    This function returns a namedtuple ``(U, S, V)`` which is the
    nearly optimal approximation of a singular value decomposition of
    a centered matrix :math:`A` such that :math:`A = U diag(S) V^T`.

    .. note:: The relation of ``(U, S, V)`` to PCA is as follows:

                - :math:`A` is a data matrix with ``m`` samples and
                  ``n`` features

                - the :math:`V` columns represent the principal directions

                - :math:`S ** 2 / (m - 1)` contains the eigenvalues of
                  :math:`A^T A / (m - 1)` which is the covariance of
                  ``A`` when ``center=True`` is provided.

                - ``matmul(A, V[:, :k])`` projects data to the first k
                  principal components

    .. note:: Different from the standard SVD, the size of returned
              matrices depend on the specified rank and q
              values as follows:

                - :math:`U` is m x q matrix

                - :math:`S` is q-vector

                - :math:`V` is n x q matrix

    .. note:: To obtain repeatable results, reset the seed for the
              pseudorandom number generator

    Args:

        A (Tensor): the input tensor of size :math:`(*, m, n)`

        q (int, optional): a slightly overestimated rank of
                           :math:`A`. By default, ``q = min(6, m,
                           n)``.

        center (bool, optional): if True, center the input tensor,
                                 otherwise, assume that the input is
                                 centered.

        niter (int, optional): the number of subspace iterations to
                               conduct; niter must be a nonnegative
                               integer, and defaults to 2.

    References::

        - Nathan Halko, Per-Gunnar Martinsson, and Joel Tropp, Finding
          structure with randomness: probabilistic algorithms for
          constructing approximate matrix decompositions,
          arXiv:0909.4061 [math.NA; math.PR], 2009 (available at
          `arXiv <http://arxiv.org/abs/0909.4061>`_).

    """

    if not torch.jit.is_scripting():
        if type(A) is not torch.Tensor and has_torch_function((A,)):
            return handle_torch_function(pca_lowrank, (A,), A, q=q, center=center, niter=niter)

    (m, n) = A.shape[-2:]

    if q is None:
        q = min(6, m, n)
    elif not (q >= 0 and q <= min(m, n)):
        raise ValueError('q(={}) must be non-negative integer'
                         ' and not greater than min(m, n)={}'
                         .format(q, min(m, n)))
    if not (niter >= 0):
        raise ValueError('niter(={}) must be non-negative integer'
                         .format(niter))

    dtype = _utils.get_floating_dtype(A)

    if not center:
        return _svd_lowrank(A, q, niter=niter, M=None)

    if _utils.is_sparse(A):
        if len(A.shape) != 2:
            raise ValueError('pca_lowrank input is expected to be 2-dimensional tensor')
        c = torch.sparse.sum(A, dim=(-2,)) / m
        # reshape c
        column_indices = c.indices()[0]
        indices = torch.zeros(2, len(column_indices),
                              dtype=column_indices.dtype,
                              device=column_indices.device)
        indices[0] = column_indices
        C_t = torch.sparse_coo_tensor(
            indices, c.values(), (n, 1), dtype=dtype, device=A.device)

        ones_m1_t = torch.ones(A.shape[:-2] + (1, m), dtype=dtype, device=A.device)
        M = _utils.transpose(torch.sparse.mm(C_t, ones_m1_t))
        return _svd_lowrank(A, q, niter=niter, M=M)
    else:
        C = A.mean(dim=(-2,), keepdim=True)
        return _svd_lowrank(A - C, q, niter=niter, M=None)