alphamask/environment.yml at main · roccomoretti/alphamask · GitHub

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name: alphamask
channels:
  - https://levinthal:paradox@conda.rosettacommons.org
  - conda-forge
  - defaults
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=2_gnu
  - bzip2=1.0.8=h4bc722e_7
  - ca-certificates=2024.8.30=hbcca054_0
  - ld_impl_linux-64=2.43=h712a8e2_2
  - libffi=3.4.2=h7f98852_5
  - libgcc=14.2.0=h77fa898_1
  - libgcc-ng=14.2.0=h69a702a_1
  - libgomp=14.2.0=h77fa898_1
  - liblzma=5.6.3=hb9d3cd8_1
  - liblzma-devel=5.6.3=hb9d3cd8_1
  - libnsl=2.0.1=hd590300_0
  - libsqlite=3.47.0=hadc24fc_1
  - libuuid=2.38.1=h0b41bf4_0
  - libzlib=1.3.1=hb9d3cd8_2
  - ncurses=6.5=he02047a_1
  - openssl=3.4.0=hb9d3cd8_0
  - pip=24.3.1=pyh8b19718_0
  - python=3.10.0=h543edf9_3_cpython
  - readline=8.2=h8228510_1
  - setuptools=75.6.0=pyhff2d567_1
  - sqlite=3.47.0=h9eae976_1
  - tk=8.6.13=noxft_h4845f30_101
  - wheel=0.45.1=pyhd8ed1ab_1
  - xz=5.6.3=hbcc6ac9_1
  - xz-gpl-tools=5.6.3=hbcc6ac9_1
  - xz-tools=5.6.3=hb9d3cd8_1
  - pip:
    - git+https://github.com/sokrypton/ColabDesign.git@70a821c877a1a1a7f09682b3b6272b72e0719975#egg=colabdesign
    - git+https://github.com/engelberger/frustrapy.git@37bc11ca5464891e34fda90e613568ec8431a517#egg=frustrapy
    - absl-py==1.4.0
    - asttokens==3.0.0
    - attrs==24.2.0
    - biopython==1.84
    - cachetools==5.5.0
    - contourpy==1.3.1
    - cuda-python==12.6.2.post1
    - cudf-cu12==24.8.3
    - cupy-cuda12x==13.3.0
    - cycler==0.12.1
    - decorator==5.1.1
    - dm-haiku==0.0.13
    - dm-tree==0.1.8
    - etils==1.11.0
    - exceptiongroup==1.2.2
    - executing==2.1.0
    - fastrlock==0.8.2
    - fonttools==4.55.2
    - fsspec==2024.10.0
    - igraph==0.11.8
    - immutabledict==4.2.1
    - ipython==8.30.0
    - jax==0.4.26
    - jax-cuda12-pjrt==0.4.26
    - jax-cuda12-plugin==0.4.26
    - jaxlib==0.4.26
    - jedi==0.19.2
    - jmp==0.0.4
    - joblib==1.4.2
    - jsonschema==4.23.0
    - jsonschema-specifications==2024.10.1
    - kaleido==0.2.1
    - kiwisolver==1.4.7
    - leidenalg==0.10.2
    - llvmlite==0.43.0
    - markdown-it-py==3.0.0
    - matplotlib==3.7.1
    - matplotlib-inline==0.1.7
    - mdurl==0.1.2
    - ml-collections==1.0.0
    - ml-dtypes==0.5.0
    - numba==0.60.0
    - numpy==1.26.4
    - nvidia-cublas-cu12==12.6.4.1
    - nvidia-cuda-cupti-cu12==12.6.80
    - nvidia-cuda-nvcc-cu12==12.6.85
    - nvidia-cuda-nvrtc-cu12==12.6.85
    - nvidia-cuda-runtime-cu12==12.6.77
    - nvidia-cudnn-cu12==8.9.7.29
    - nvidia-cufft-cu12==11.3.0.4
    - nvidia-cusolver-cu12==11.7.1.2
    - nvidia-cusparse-cu12==12.5.4.2
    - nvidia-nccl-cu12==2.23.4
    - nvidia-nvjitlink-cu12==12.6.85
    - nvtx==0.2.10
    - opt-einsum==3.4.0
    - packaging==24.2
    - pandas==2.2.2
    - parso==0.8.4
    - pathlib==1.0.1
    - pexpect==4.9.0
    - pillow==11.0.0
    - plotly==5.24.1
    - prompt-toolkit==3.0.48
    - ptyprocess==0.7.0
    - pure-eval==0.2.3
    - py3dmol==2.4.2
    - pyarrow==16.1.0
    - pygments==2.18.0
    - pynvjitlink-cu12==0.4.0
    - pyparsing==3.2.0
    - python-dateutil==2.9.0.post0
    - pytz==2024.2
    - pyyaml==6.0.2
    - referencing==0.35.1
    - rich==13.9.4
    - rmm-cu12==24.8.2
    - rpds-py==0.22.3
    - scipy==1.14.1
    - six==1.17.0
    - stack-data==0.6.3
    - tabulate==0.9.0
    - tenacity==9.0.0
    - texttable==1.7.0
    - toolz==1.0.0
    - traitlets==5.14.3
    - typing-extensions==4.12.2
    - tzdata==2024.2
    - wcwidth==0.2.13
    - h5py==3.10.0
    - tqdm
    - scikit-learn
    - seaborn
    - requests

prefix: /home/iwe30/anaconda3/envs/alphamask