Hi,
when I run MitoSeek with parameter -sb 1, the script should, according to the manual, "Remove all sites with strand bias score in the top 1 %". With this value, no heteroplasmic sites are reported. When I use -sb 99, two heteroplasmic sites are reported. With -sb 0 the same sites are reported, I guess the zero parameter means that the strand bias filter will not be applied at all.
This gets me a little confused. Could there be a typo in the manual? My interpretation would be that using -sb 99 will include 99 % of the sites, excluding the ones with strand bias score in the top 1 %.
Cheers,
Jaakko
Hi,
when I run MitoSeek with parameter -sb 1, the script should, according to the manual, "Remove all sites with strand bias score in the top 1 %". With this value, no heteroplasmic sites are reported. When I use -sb 99, two heteroplasmic sites are reported. With -sb 0 the same sites are reported, I guess the zero parameter means that the strand bias filter will not be applied at all.
This gets me a little confused. Could there be a typo in the manual? My interpretation would be that using -sb 99 will include 99 % of the sites, excluding the ones with strand bias score in the top 1 %.
Cheers,
Jaakko