From 47b469849ac6b05d97213dc85eb9b6e15018a1db Mon Sep 17 00:00:00 2001 From: Michael Landis Date: Wed, 7 May 2025 12:42:18 -0500 Subject: [PATCH] add biogeography tutorial module --- home/tutorials.md | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/home/tutorials.md b/home/tutorials.md index 2b60870b..9a4ef7f2 100644 --- a/home/tutorials.md +++ b/home/tutorials.md @@ -150,3 +150,28 @@ This module is intended for users looking to infer trait-dependent diversificati - If interested in jointly estimating topology and state-dependent diversification rates, adapt [Relaxed clocks & time-trees]({{ base.url }}/tutorials/clocks) to use `dnCDBDP` or `dnGLHBDSP` instead of `dnBDP` (consider completing the **Molecular phylogenetic inference** and **Dating a phylogeny** modules). {% endaside %} + +{% aside Biogeography %} + +This module is for researchers interested in modeling how species disperse, go extinct +and speciate over geological time. It includes examples for how to use biogeographic +models to reconstruct ancestral species ranges, test relationships between regional +features and biogeographic rates, and use paleogeographic information to time-calibrate +phylogenetic divergence times. Biogeographic models explored are Dispersal-Extinction-Cladogenesis (DEC), +Geographic State-dependent Speciation Extinction (GeoSSE), and Feature-Informed GeoSSE (FIG) models. + +- Pre-requisites: **RevBayes fundamentals**, **Molecular phylogenetic analysis**, and **Background on state-dependent diversification-rate estimation**. + +Those interested in Dispersal-Extinction-Cladogenesis models should read: +- [Introduction to DEC models]({{ base.url }}/tutorials/biogeo/biogeo_intro) +- [Simple DEC]({{ base.url }}/tutorials/biogeo/biogeo_simple) +- [Epoch DEC]({{ base.url }}/tutorials/biogeo/biogeo_epoch) +- [Biogeographic Dating with DEC]({{ base.url }}/tutorials/biogeo/biogeo_dating) + +Those interested in GeoSSE/FIG models should read: +- [Simple GeoSSE]({{ base.url }}/tutorials/geosse) +- [MultiFIG]({{ base.url }}/tutorials/multifig) +- [TimeFIG]({{ base.url }}/tutorials/timefig) +- [Biogeographic Dating with TimeFIG]({{ base.url }}/tutorials/timefig_dating) + +{% endaside %}